Clone Information

BLAST Search Result

Clone Name	bart25g09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL18_ARATH (P42791) 60S ribosomal protein L18	281	9e-76
2	RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)	260	2e-69
3	RL18_RAT (P12001) 60S ribosomal protein L18	213	4e-55
4	RL18_ICTPU (Q90YV0) 60S ribosomal protein L18	213	4e-55
5	RL18_MOUSE (P35980) 60S ribosomal protein L18	212	5e-55
6	RL18_HUMAN (Q07020) 60S ribosomal protein L18	212	5e-55
7	RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)	211	1e-54
8	RL18_ORENI (P69091) 60S ribosomal protein L18	210	3e-54
9	RL18_OREMO (P69090) 60S ribosomal protein L18	210	3e-54
10	RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)	204	2e-52
11	RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)	198	8e-51
12	RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B	190	2e-48
13	RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A	190	2e-48
14	RL18_TRYBB (P50885) 60S ribosomal protein L18	174	1e-43
15	RL18_SALSA (P24558) 60S ribosomal protein L18	131	2e-30
16	RL18_PIG (Q95342) 60S ribosomal protein L18 (Fragment)	117	2e-26
17	RL18E_PYRAB (Q9V197) 50S ribosomal protein L18e	49	1e-05
18	RL18E_PYRKO (Q5JJF5) 50S ribosomal protein L18e	46	6e-05
19	RL18E_PYRHO (O59302) 50S ribosomal protein L18e	46	6e-05
20	RL18E_PYRFU (Q8U0E5) 50S ribosomal protein L18e	46	6e-05
21	RL18E_METTH (O26145) 50S ribosomal protein L18e	45	1e-04
22	RL18E_METJA (P54022) 50S ribosomal protein L18e	42	0.001
23	RL18E_METKA (Q8TVB7) 50S ribosomal protein L18e	40	0.006
24	RL18E_METMP (Q6LXM7) 50S ribosomal protein L18e	37	0.051
25	RL18E_ARCFU (O29138) 50S ribosomal protein L18e	37	0.051
26	RL18E_METMA (Q8PW46) 50S ribosomal protein L18e	33	0.44
27	RL18E_METAC (Q8TT44) 50S ribosomal protein L18e	33	0.44
28	RL18E_PYRAE (Q8ZYQ2) 50S ribosomal protein L18e	33	0.57
29	PYR1_DICDI (P20054) Protein PYR1-3 [Includes: Glutamine-dependen...	32	1.7
30	VG54_ICHV1 (Q00158) Hypothetical gene 54 protein	30	4.8
31	FBSH_HUMAN (Q9HAH7) Probable fibrosin-1 long transcript protein	30	4.8
32	ZN217_HUMAN (O75362) Zinc finger protein 217	30	6.3
33	TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit T...	30	6.3
34	KLCB2_ECOLI (P52605) Protein klcB	30	6.3
35	CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2	30	6.3
36	ARS_STRPU (P50473) Arylsulfatase precursor (EC 3.1.6.1) (AS) (Ar...	29	8.2
37	MURD_RHILO (Q98KB1) UDP-N-acetylmuramoylalanine--D-glutamate lig...	29	8.2
38	FADI_ERWCT (Q6D2L6) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty...	29	8.2
39	BCSB2_ACEXY (O82860) Cyclic di-GMP-binding protein precursor (Ce...	29	8.2

>RL18_ARATH (P42791) 60S ribosomal protein L18|
          Length = 187

 Score =  281 bits (719), Expect = 9e-76
 Identities = 139/167 (83%), Positives = 152/167 (91%)
 Frame = +3

Query: 69  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 248
           MGIDL+AGG++K+TKRTAPKSDDVYLKL VKLYRFLVRRT S+FN VILKRLFMSK N+ 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 249 PLSMRRLVRFMDGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECL 428
           PLS+ RLV FM GK DKIAV+VGTITDD RV+EIPAMKV ALRFTE ARARI  AGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 429 TFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 569
           TFDQLALRAPLGQNT+LLRGPKN+REAV+HFG APGVPHSH+KPYVR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVR 167

to top

>RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)|
          Length = 183

 Score =  260 bits (664), Expect = 2e-69
 Identities = 127/164 (77%), Positives = 145/164 (88%)
 Frame = +3

Query: 78  DLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLS 257
           DL AGG+NK+TKRT+PKS+D+YLKLLVKLYRFLVRRT S FNAVILKRLFMSK NRPPLS
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 258 MRRLVRFMDGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFD 437
           + RL+++M GK  KI V+VG +TDD RVY++P +KV AL+FTETARARI  AGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 438 QLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 569
           QLALR PL  +T+LLRGPKNAREAV+HFG APGVPHSHTKPYVR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVR 163

to top

>RL18_RAT (P12001) 60S ribosomal protein L18|
          Length = 187

 Score =  213 bits (541), Expect = 4e-55
 Identities = 103/168 (61%), Positives = 131/168 (77%), Gaps = 2/168 (1%)
 Frame = +3

Query: 72  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 251
           G+D +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 252 LSMRRLVRFMD--GKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 425
           LS+ R++R M   G+ +K AV+VGTITDD R+ E+P +KV ALR +  AR+RI+ AGG+ 
Sbjct: 60  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 119

Query: 426 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 569
           LTFDQLAL +P G+ T+LL GP+  RE  RHFGKAPG PHSHTKPYVR
Sbjct: 120 LTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVR 167

to top

>RL18_ICTPU (Q90YV0) 60S ribosomal protein L18|
          Length = 187

 Score =  213 bits (541), Expect = 4e-55
 Identities = 104/168 (61%), Positives = 130/168 (77%), Gaps = 2/168 (1%)
 Frame = +3

Query: 72  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 251
           G+D +   ++++  RT PKS D+YL+LLVKLYRFL RR+ + FN V+LKRLFMSKTNRPP
Sbjct: 1   GVD-IRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPP 59

Query: 252 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 425
           L++ RL+R M   G+ +KIAV+VGTITDD R+  IP +KV ALR T  AR RI+ AGG+ 
Sbjct: 60  LALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQV 119

Query: 426 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 569
           +TFDQLA+  P GQ T+LL GP+ ARE  RHFGKAPG PHSHTKPY+R
Sbjct: 120 MTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIR 167

to top

>RL18_MOUSE (P35980) 60S ribosomal protein L18|
          Length = 187

 Score =  212 bits (540), Expect = 5e-55
 Identities = 102/168 (60%), Positives = 131/168 (77%), Gaps = 2/168 (1%)
 Frame = +3

Query: 72  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 251
           G+D +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 252 LSMRRLVRFMD--GKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 425
           LS+ R++R M   G+ +K AV+VGT+TDD R+ E+P +KV ALR +  AR+RI+ AGG+ 
Sbjct: 60  LSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 119

Query: 426 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 569
           LTFDQLAL +P G+ T+LL GP+  RE  RHFGKAPG PHSHTKPYVR
Sbjct: 120 LTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVR 167

to top

>RL18_HUMAN (Q07020) 60S ribosomal protein L18|
          Length = 187

 Score =  212 bits (540), Expect = 5e-55
 Identities = 105/168 (62%), Positives = 130/168 (77%), Gaps = 2/168 (1%)
 Frame = +3

Query: 72  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 251
           G+D +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 252 LSMRRLVRFMD--GKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 425
           LS+ R++R M   G+ +K AV+VGTITDD RV E+P +KV ALR T  AR+RI+ AGG+ 
Sbjct: 60  LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 119

Query: 426 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 569
           LTFDQLAL +P G  T+LL GP+  RE  RHFGKAPG PHSHTKPYVR
Sbjct: 120 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVR 167

to top

>RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)|
          Length = 187

 Score =  211 bits (537), Expect = 1e-54
 Identities = 104/167 (62%), Positives = 130/167 (77%), Gaps = 2/167 (1%)
 Frame = +3

Query: 72  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 251
           GID +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 59

Query: 252 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 425
           LSM RL+R M   G+ +K AV+VG ITDD R+++IP +KV AL+ T   R+RI+ +GG+ 
Sbjct: 60  LSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQI 119

Query: 426 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYV 566
           +TFDQLAL AP GQNT+LL GP+ ARE  RHFGKAPG PHS TKPYV
Sbjct: 120 MTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYV 166

to top

>RL18_ORENI (P69091) 60S ribosomal protein L18|
          Length = 187

 Score =  210 bits (534), Expect = 3e-54
 Identities = 100/168 (59%), Positives = 132/168 (78%), Gaps = 2/168 (1%)
 Frame = +3

Query: 72  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 251
           G+D +   ++++  R  PKS D+YL+LLVKLYRFL RR+ + FN V+L+RLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPP 59

Query: 252 LSMRRLVRFMD--GKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 425
           +++ RL+R M   G+ +KIAV+VGT+TDD R+ +IP +K+ ALR T+ AR RI+ AGG+ 
Sbjct: 60  IAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQV 119

Query: 426 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 569
           +TFDQLAL +P GQ T+LL GP+ ARE  RHFGKAPG PHSHTKPYVR
Sbjct: 120 MTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVR 167

to top

>RL18_OREMO (P69090) 60S ribosomal protein L18|
          Length = 187

 Score =  210 bits (534), Expect = 3e-54
 Identities = 100/168 (59%), Positives = 132/168 (78%), Gaps = 2/168 (1%)
 Frame = +3

Query: 72  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 251
           G+D +   ++++  R  PKS D+YL+LLVKLYRFL RR+ + FN V+L+RLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPP 59

Query: 252 LSMRRLVRFMD--GKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 425
           +++ RL+R M   G+ +KIAV+VGT+TDD R+ +IP +K+ ALR T+ AR RI+ AGG+ 
Sbjct: 60  IAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQV 119

Query: 426 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 569
           +TFDQLAL +P GQ T+LL GP+ ARE  RHFGKAPG PHSHTKPYVR
Sbjct: 120 MTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVR 167

to top

>RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)|
          Length = 187

 Score =  204 bits (518), Expect = 2e-52
 Identities = 102/167 (61%), Positives = 127/167 (76%), Gaps = 2/167 (1%)
 Frame = +3

Query: 72  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 251
           GID +   ++++ +R  PKS D+YL+LLVKLYRFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 59

Query: 252 LSMRRLVRFMD--GKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGEC 425
           LSM RL+R M    + +K AV+VG IT D R+++IP + V AL+ T  AR+RI+ AGG+ 
Sbjct: 60  LSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQI 119

Query: 426 LTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYV 566
           +TFDQLAL AP GQNT+LL GP+ ARE  RHFGKAP  PHS TKPYV
Sbjct: 120 MTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYV 166

to top

>RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)|
          Length = 186

 Score =  198 bits (504), Expect = 8e-51
 Identities = 99/157 (63%), Positives = 121/157 (77%), Gaps = 2/157 (1%)
 Frame = +3

Query: 69  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 248
           MGID  +    +   RTAPKSD+VYLKLLVKLY FL RRT + FN V+LK LF+SK NRP
Sbjct: 1   MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRP 60

Query: 249 PLSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGE 422
           P+S+ R+ R +  +G A+K  V+VGT+TDD R++E P   VAALRFT  ARA+IV AGGE
Sbjct: 61  PVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGE 120

Query: 423 CLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAP 533
           C+T DQLA+RAP GQNTL+LRGP+N+REAVRHFG  P
Sbjct: 121 CITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMGP 157

to top

>RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B|
          Length = 187

 Score =  190 bits (483), Expect = 2e-48
 Identities = 101/171 (59%), Positives = 125/171 (73%), Gaps = 4/171 (2%)
 Frame = +3

Query: 69  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 248
           MGID +     ++++R+ P S++VYLKLLVKLYRFL RRT S+FN  ILKRLF SKTNRP
Sbjct: 1   MGID-IERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRP 59

Query: 249 PLSMRRLVRFMDGKA----DKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAG 416
           P+S+ ++      K+     K  VIVGT+TDD+R+  +P + VAALRFT++ARARI+ AG
Sbjct: 60  PISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAG 119

Query: 417 GECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 569
           GE LT DQLALRAP G NT+LLRG K+AREA RHFG     PH H  PYVR
Sbjct: 120 GEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFG---PHKHKAPYVR 167

to top

>RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A|
          Length = 187

 Score =  190 bits (483), Expect = 2e-48
 Identities = 99/171 (57%), Positives = 126/171 (73%), Gaps = 4/171 (2%)
 Frame = +3

Query: 69  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 248
           MGID +     K+++R+ P S++VYLKLLVKLYRFL RRT S+FN  ILKRLF SKTNRP
Sbjct: 1   MGID-IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRP 59

Query: 249 PLSMRRLVRFMDGKA----DKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAG 416
           P+S+ ++      K+    +K  V+VGT+TDD+R+  +P + +AALRFT++ARARI+ AG
Sbjct: 60  PISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAG 119

Query: 417 GECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVR 569
           GE LT DQLALRAP G NT+L+RG K+AREA RHFG     PH H  PYVR
Sbjct: 120 GEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVR 167

to top

>RL18_TRYBB (P50885) 60S ribosomal protein L18|
          Length = 193

 Score =  174 bits (442), Expect = 1e-43
 Identities = 93/174 (53%), Positives = 119/174 (68%), Gaps = 8/174 (4%)
 Frame = +3

Query: 69  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRP 248
           MG+DL    + KR  R    S + Y+KLL+KLY+FL +RT S FN +I KRL  S+ NR 
Sbjct: 1   MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRA 60

Query: 249 PLSM--------RRLVRFMDGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARI 404
           P+S+        RR V    GK   IAVIVG + DD R+  IPA+++ ALRF+++AR RI
Sbjct: 61  PISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERI 120

Query: 405 VNAGGECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYV 566
             AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+V+HFG A GVP SH KP+V
Sbjct: 121 TGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHV 173

to top

>RL18_SALSA (P24558) 60S ribosomal protein L18|
          Length = 179

 Score =  131 bits (329), Expect = 2e-30
 Identities = 75/169 (44%), Positives = 113/169 (66%), Gaps = 3/169 (1%)
 Frame = +3

Query: 69  MGIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRR-TKSQFNAVILKRLFMSKTNR 245
           MGI ++   +++  +   P S+D+   LLVK+YR    + + + FN V+L+RLFMS+T+R
Sbjct: 1   MGI-VIQHNKDRLVRPKQPLSEDI--TLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHR 57

Query: 246 PPLSMRRLVRFMD--GKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGG 419
           PP+S+ R++R M   G+ ++ AV+VGT+TDD R++EIP +KV+AL+ T   R RI+    
Sbjct: 58  PPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-V 116

Query: 420 ECLTFDQLALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYV 566
           + + F  LAL AP  Q ++LL  P+NAR+  RHF  AP +P  HTKPYV
Sbjct: 117 QIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYV 163

to top

>RL18_PIG (Q95342) 60S ribosomal protein L18 (Fragment)|
          Length = 103

 Score =  117 bits (293), Expect = 2e-26
 Identities = 60/104 (57%), Positives = 77/104 (74%), Gaps = 2/104 (1%)
 Frame = +3

Query: 72  GIDLVAGGRNKRTKRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPP 251
           G+D +   ++++ +R  PKS D+YL+LLVKL RFL RRT S FN V+LKRLFMS+TNRPP
Sbjct: 1   GVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPP 59

Query: 252 LSMRRLVRFM--DGKADKIAVIVGTITDDQRVYEIPAMKVAALR 377
           LS+ R+ R M   G+  K AV+VGTITDD R  E+P +KV ALR
Sbjct: 60  LSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 103

to top

>RL18E_PYRAB (Q9V197) 50S ribosomal protein L18e|
          Length = 120

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 36/124 (29%), Positives = 63/124 (50%)
 Frame = +3

Query: 111 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLSMRRLVRFMDGK 290
           KRT P   D  L+ L++  R      K +    I  RL   +  R  +++ R+ R+   K
Sbjct: 2   KRTGPT--DPNLRRLIRYLRKKSNEEKVKIWKDIAWRLERPRRQRAEVNVSRINRY--AK 57

Query: 291 ADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLGQN 470
              + V+ G++    ++ +   + VAA +F+ETAR +I  AGGE +T ++L  R P G  
Sbjct: 58  DGDMIVVPGSVLGAGKIEK--KVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGSG 115

Query: 471 TLLL 482
            +++
Sbjct: 116 VIIM 119

to top

>RL18E_PYRKO (Q5JJF5) 50S ribosomal protein L18e|
          Length = 121

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 32/124 (25%), Positives = 62/124 (50%)
 Frame = +3

Query: 111 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLSMRRLVRFMDGK 290
           KRT P   D+ L+ L++  R        +    I  RL   +  R  +++ ++ R+   K
Sbjct: 3   KRTGPT--DINLRRLIRTLRKKSNEEGVKIWKDIAWRLERPRRQRAEVNISKINRYT--K 58

Query: 291 ADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLGQN 470
              + ++ G++    R+     + VAA +F+E AR +I+ AGGE ++ ++L  R P G  
Sbjct: 59  EGDVVIVPGSVLGAGRLEH--KVVVAAWKFSEAARRKIIEAGGEAISIEELMERNPKGSG 116

Query: 471 TLLL 482
            +++
Sbjct: 117 VIIM 120

to top

>RL18E_PYRHO (O59302) 50S ribosomal protein L18e|
          Length = 120

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
 Frame = +3

Query: 111 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAV---ILKRLFMSKTNRPPLSMRRLVRFM 281
           KRT P   +     L +L RFL +++  +   +   +  RL   +  R  +++ ++ R+ 
Sbjct: 2   KRTGPTDPN-----LRRLIRFLKKKSNEEGVKIWKDLAWRLERPRRQRAEVNVSKINRY- 55

Query: 282 DGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPL 461
             K   + V+ G++    ++ +   + VAA +F+ETAR +I  AGGE +T ++L  R P 
Sbjct: 56  -AKDGDMIVVPGSVLGAGKLEK--KVIVAAWKFSETARKKITEAGGEAITIEELIERNPK 112

Query: 462 GQNTLLL 482
           G   +++
Sbjct: 113 GSGVIIM 119

to top

>RL18E_PYRFU (Q8U0E5) 50S ribosomal protein L18e|
          Length = 120

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
 Frame = +3

Query: 111 KRTAPKSDDVYLKLLVKLYRFLVRRTKSQFNAVILK----RLFMSKTNRPPLSMRRLVRF 278
           KRT P   +     L +L R+L R+  +++   I K    RL   +  R  +++ ++ R+
Sbjct: 2   KRTGPTDPN-----LRRLIRYL-RKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRY 55

Query: 279 MDGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAP 458
            +    ++ V+ G++    ++ +   + VAA +F+ETAR +I+ AGGE +T ++L  R P
Sbjct: 56  AND--GEMIVVPGSVLGAGKLEK--KVIVAAWKFSETARRKIIEAGGEAITIEELIERNP 111

Query: 459 LGQNTLLL 482
            G    ++
Sbjct: 112 TGSGVRIM 119

to top

>RL18E_METTH (O26145) 50S ribosomal protein L18e|
          Length = 121

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
 Frame = +3

Query: 153 LVKLYRFLVRRTKSQFNAV---ILKRLFMSKTNRPPLSMRRLVRFMDGKADKIAVIVGTI 323
           L+KL R L +++  +  A+   + +RL     NR  +++ ++ R  D   D+  ++ G +
Sbjct: 12  LIKLIRNLRKKSSQEGAAIWKDVARRLERPTRNRAAVNISKINRHSD--EDETVLVPGKV 69

Query: 324 TDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLL 482
                +     ++V AL F++TAR +I  AGGECLT  ++    P  +N  ++
Sbjct: 70  LGSGNLDH--RVQVVALSFSQTARDKIERAGGECLTLGKIVEENPAIKNIKII 120

to top

>RL18E_METJA (P54022) 50S ribosomal protein L18e|
          Length = 121

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
 Frame = +3

Query: 153 LVKLYRFLVR---RTKSQFNAVILKRLFMSKTNRPPLSMRRLVRFMDGKADKIAVIVGTI 323
           LVKL   L +   + +++    I +RL   +  R  +++ ++ R+   K   + ++ G +
Sbjct: 12  LVKLIEILKQESYKNQAKIWKDIARRLAKPRRRRAEVNLSKINRYT--KEGDVVLVPGKV 69

Query: 324 TDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLL 482
               ++     + VAA  F+ETA+  I  AGGE +T ++L  R P G N  ++
Sbjct: 70  LGAGKLEH--KVVVAAFAFSETAKKLIKEAGGEAITIEELIKRNPKGSNVKIM 120

to top

>RL18E_METKA (Q8TVB7) 50S ribosomal protein L18e|
          Length = 127

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
 Frame = +3

Query: 153 LVKLYRFLVRRTKSQFNAVILK----RLFMSKTNRPPLSMRRLVRFMDGKA-------DK 299
           L KL R L ++   ++NA + +    RL   +  R  +++ +L    DG A       ++
Sbjct: 13  LRKLIRDL-KKAACEYNAPVWRDVAERLSRPRRQRAEVNVGKL----DGLARRGVIQEEE 67

Query: 300 IAVIVGTITDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLG 464
             ++ G +  D  + +   ++VAA RF+ TAR +I  AGGECLT  +L    P G
Sbjct: 68  TVLVPGKVLGDGVITQ--PLRVAAWRFSRTARMKIEAAGGECLTIRELLEENPEG 120

to top

>RL18E_METMP (Q6LXM7) 50S ribosomal protein L18e|
          Length = 120

 Score = 36.6 bits (83), Expect = 0.051
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 363 VAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLL 482
           VAA  F+ETA++ I   GG+CLT ++L    P G    ++
Sbjct: 80  VAAFSFSETAKSAIEAVGGKCLTIEELIAENPKGSKVTIM 119

to top

>RL18E_ARCFU (O29138) 50S ribosomal protein L18e|
          Length = 117

 Score = 36.6 bits (83), Expect = 0.051
 Identities = 22/91 (24%), Positives = 47/91 (51%)
 Frame = +3

Query: 210 ILKRLFMSKTNRPPLSMRRLVRFMDGKADKIAVIVGTITDDQRVYEIPAMKVAALRFTET 389
           + +RL   +  +  +++ ++ ++   K ++  V+ G +     + +   +KVAAL F+E 
Sbjct: 30  VAERLAKPRRLQAEVNVSKIEKY--AKPNEYVVVPGKVLGSGSITK--PVKVAALSFSEK 85

Query: 390 ARARIVNAGGECLTFDQLALRAPLGQNTLLL 482
           A ++I  AGG C+  ++L    P G    L+
Sbjct: 86  AASKIREAGGVCMKIEELLKENPKGSGVRLM 116

to top

>RL18E_METMA (Q8PW46) 50S ribosomal protein L18e|
          Length = 126

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 363 VAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLLR 485
           VAA+ F+E+A  +I  AGG+CL+ +++    P G    + R
Sbjct: 86  VAAVTFSESAVEKITEAGGKCLSVEEIMEANPKGSGIRIFR 126

to top

>RL18E_METAC (Q8TT44) 50S ribosomal protein L18e|
          Length = 126

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 363 VAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLLR 485
           +AAL F+++A  +I  AGG+CL+ +++    P G    + R
Sbjct: 86  IAALTFSDSAFEKITEAGGKCLSLEEIMEANPKGSGIRIFR 126

to top

>RL18E_PYRAE (Q8ZYQ2) 50S ribosomal protein L18e|
          Length = 122

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 24/113 (21%), Positives = 53/113 (46%)
 Frame = +3

Query: 144 LKLLVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLSMRRLVRFMDGKADKIAVIVGTI 323
           L++L +  R   R   +    V+ + +   +  R  +++ +L R    K   + V+ G +
Sbjct: 13  LRMLARFLRKAARANSASIWRVVAEFVEKPRRQRVIVNVGKLNRV--AKEGDVVVVPGKL 70

Query: 324 TDDQRVYEIPAMKVAALRFTETARARIVNAGGECLTFDQLALRAPLGQNTLLL 482
               ++ +   + VAA++ +  A  +++ AGGE LT  +L  + P G    ++
Sbjct: 71  LAGGQLNK--KIIVAAVKISPKAARKVIEAGGEVLTIPELVRKYPRGSGVRIV 121

to top

>PYR1_DICDI (P20054) Protein PYR1-3 [Includes: Glutamine-dependent|
            carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate
            carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC
            3.5.2.3)]
          Length = 2185

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 497  VLGTPQEKRVLSKRSTEGELVKGKALATSVDNPGPR 390
            + G   E R+L KRS   +L+KGK LAT    P  R
Sbjct: 1899 LFGIAHEMRILVKRSGGSDLLKGKVLATLFYEPSTR 1934

to top

>VG54_ICHV1 (Q00158) Hypothetical gene 54 protein|
          Length = 607

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 153 LVKLYRFLVRRTKSQFNAVILKRLFMSKTNRPPLSMRRLVRF---MDGKADKIAVI 311
           L+ + RF +   ++ F   I +R+FM   +  P +   + +F   MD  ADK A++
Sbjct: 321 LLGIIRFFIACLRAGFRGTIFRRIFMRYLDDDPSTRETVTKFMGAMDTAADKYALL 376

to top

>FBSH_HUMAN (Q9HAH7) Probable fibrosin-1 long transcript protein|
          Length = 372

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 143 PQAARQALPLPGAEDQEPVQRRDPEAALHEQDK 241
           P+AAR     PG++ + PV+RR+P     E+D+
Sbjct: 153 PEAART----PGSDKERPVERREPSITKEEKDR 181

to top

>ZN217_HUMAN (O75362) Zinc finger protein 217|
          Length = 1048

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 13/138 (9%)
 Frame = -2

Query: 521 KVPNSFPGVLGTPQEKRVLSKRSTEGELVKGKALATSVD----NPGPRRLG--------E 378
           ++P+ F  VLG+     VLS    + +     A   S D    NP P  L         E
Sbjct: 578 EMPSVFQNVLGSA----VLSPAHKDTQDFHKNAADDSADKVNKNPTPAYLDLLKKRSAVE 633

Query: 377 PERGHLHCRYLVDPLVIGDGAHDHSDLVRLPIHEPDEAAHRERRPVCLAHEEPLQDHGVE 198
            +  +L CR   D     DG+  H+  V     + + AA    RP    HE+PL      
Sbjct: 634 TQANNLICRTKADVTPPPDGSTTHNLEVSPKEKQTETAADCRYRPSVDCHEKPL-----N 688

Query: 197 LALGPPHQ-EAVELDEQL 147
           L++G  H   A+ L + L
Sbjct: 689 LSVGALHNCPAISLSKSL 706

to top

>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,|
           mitochondrial precursor
          Length = 466

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 486 GPKNAREAVRHFGKAPGVPHSHTKP 560
           GPKN  EAV   G  P VP   T+P
Sbjct: 440 GPKNLSEAVSSIGSLPPVPQQPTEP 464

to top

>KLCB2_ECOLI (P52605) Protein klcB|
          Length = 461

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 113 AHGAQVGRCVPQAARQALPLPGAEDQEPV-QRRDPEAALHEQDKPAAALDAP 265
           AH A + R    +A+  L    A+ QEP  QRR+P      + +PA   DAP
Sbjct: 328 AHQAFIARKWAASAKAKLAAARAKAQEPAGQRREPVTPAKPEPEPAKDEDAP 379

to top

>CWC2_MAGGR (Q51TF7) Pre-mRNA-splicing factor CWC2|
          Length = 580

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 23/86 (26%), Positives = 37/86 (43%)
 Frame = +2

Query: 146 QAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPPRQVHGWEGGQDRCDRGHHH 325
           +A R+ALP   AE    ++ RDPEA    + + +  LD           G +  D  H  
Sbjct: 261 EAVRRALP---AEFVAEIEGRDPEARKRRKMESSYGLD-----------GYEAPDEVHFA 306

Query: 326 R*PEGLRDTGNEGGRAQVHRDGEGQD 403
           R  + +   G  G   Q+  +G G++
Sbjct: 307 RGAQAVNPVGRRGFEDQLMLEGGGEE 332

to top

>ARS_STRPU (P50473) Arylsulfatase precursor (EC 3.1.6.1) (AS) (Aryl-sulfate|
           sulphohydrolase) (ARS)
          Length = 567

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 344 RDTGNEGGRAQVHRDGEGQDCQRWWRVPYL 433
           R+   EGG A V R G+GQ  +   R+PY+
Sbjct: 328 REYCGEGGDANVFRGGKGQSWEGGHRIPYI 357

to top

>MURD_RHILO (Q98KB1) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 466

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 387 TARARIVNAGGECLTFDQ----LALRAPLGQNTLLLRGPKNAREAVRHFGKAPGVPHSHT 554
           TARA ++  G + L +D     +A  A  G  T  LRG   A+ +   F  +PGVP +H 
Sbjct: 24  TARA-LIEGGAQVLAWDDNPDSVAKAAATGIATADLRGADWAKFSA--FVLSPGVPLTHP 80

Query: 555 KPY 563
           KP+
Sbjct: 81  KPH 83

to top

>FADI_ERWCT (Q6D2L6) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty acid|
           oxidation complex beta subunit) (Beta-ketothiolase)
           (Acetyl-CoA acyltransferase) (Acyl-CoA ligase) (ACSs)
          Length = 437

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 335 LVIGDGAHDHSDLVRLPIHEPDEAAHRERRPVCLAHEEPLQDHGVELALGPPHQEAVELD 156
           L +GD A   +    +   E DE AHR  +    A E  +    V  A  PP+++A+  D
Sbjct: 182 LRMGDTAEQMAKTYGITREEQDELAHRSHKLAAQAWESGVLRDEVMTAYVPPYEKALSED 241

Query: 155 EQL 147
             +
Sbjct: 242 NNV 244

to top

>BCSB2_ACEXY (O82860) Cyclic di-GMP-binding protein precursor (Cellulose|
           synthase regulatory subunit) (Cellulose synthase protein
           B) (CDGBP)
          Length = 802

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +2

Query: 113 AHGAQVGRCVPQAARQALPLPGAEDQEPVQRRDPEAALHEQDKPAAALDAPP 268
           A GAQ     P A++   P P   D  P+    P+AA      PAAA  APP
Sbjct: 13  ATGAQAA---PVASKAPAPQPAGSDLPPLPAAPPQAA-----PPAAASAAPP 56


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,397,185
Number of Sequences: 219361
Number of extensions: 1635607
Number of successful extensions: 5552
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 5297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5532
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result