>SH2P1_MOUSE (Q62018) SH2 domain-binding protein 1 (Tetratricopeptide|
            repeat-containing, SH2-binding phosphoprotein of 150 kDa)
            (TPR-containing, SH2-binding phosphoprotein of 150 kDa)
            (p150TSP)
          Length = 1173

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 235  RSPSKEDSPKKSARLREDPDADEDKTKRERRR 330
            +S S+  SP++S R   D D+D D+  R+RRR
Sbjct: 1063 KSGSEAGSPRRSGRQESDEDSDSDQPSRKRRR 1094

>SH2P1_HUMAN (Q6PD62) SH2 domain-binding protein 1|
          Length = 1173

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 190  KKGGSSWLTAVKRAFRSPSKEDSPKKSARLREDPDADEDKTKRERR 327
            KK  SS   + +   +S S+  SP++  R R D D+D D+  R+RR
Sbjct: 1050 KKCASSESDSDENQNKSGSEAGSPRRPRRQRSDQDSDSDQPSRKRR 1095

>NAT_STRGR (Q54225) N-acetyltransferase (EC 2.3.1.-)|
          Length = 194

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 186 PHGGHHRLAVAVVPRPRASTHLPPSHGYATSYSILAC*RAAWQEAAEILL--LPRLAGAG 13
           P  G HRL VA  P P     L    GYATS  +    +AA+  +AE+ +   P  AG G
Sbjct: 55  PKDGPHRLMVAAEPAPSGPERL---LGYATSSPLRP--KAAYATSAEVSVYCAPDAAGRG 109

Query: 12  SG 7
            G
Sbjct: 110 VG 111

>RPOC1_PROMP (Q7V007) DNA-directed RNA polymerase gamma chain (EC 2.7.7.6) (RNAP|
           gamma subunit) (Transcriptase gamma chain) (RNA
           polymerase gamma subunit)
          Length = 634

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 163 EPVVPAMGNKKGGSSWLTAVKRAFRSPSKEDSPKKSARLREDPDADEDK 309
           EP+V    +   GS +LTA++  F+ P+  D+ K  A L +   A EDK
Sbjct: 508 EPIVTPSQDMVLGSYYLTALQPNFKKPNFGDNQKTYASLEDVIFAFEDK 556

>CHSTD_HUMAN (Q8NET6) Carbohydrate sulfotransferase 13 (EC 2.8.2.5) (Chondroitin|
           4-O-sulfotransferase 3) (Chondroitin 4-sulfotransferase
           3) (C4ST3) (C4ST-3)
          Length = 341

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 21/51 (41%), Positives = 26/51 (50%)
 Frame = +1

Query: 175 PAMGNKKGGSSWLTAVKRAFRSPSKEDSPKKSARLREDPDADEDKTKRERR 327
           PA GN+  GSSWL   K   RSP      +K   L +DP +   K  R+RR
Sbjct: 32  PAFGNRALGSSWLGGEK---RSPL-----QKLYDLDQDPRSTLAKVHRQRR 74

>PCDA2_PANTR (Q5DRF0) Protocadherin alpha 2 precursor (PCDH-alpha2)|
          Length = 948

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
 Frame = +1

Query: 133 CPRPWNNSNREPVVPAMGNKKGGSSWLTAVKRAFRSPSKEDSPKK-----SARLREDPDA 297
           C  P     R P  P +       SW  + +R  R  S ED PK      S  L + PD+
Sbjct: 723 CSVPATEGARAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEDPPKTDLMAFSPSLSQGPDS 782

Query: 298 DEDKTKRE 321
            E+K   E
Sbjct: 783 AEEKQLSE 790


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,836,786
Number of Sequences: 219361
Number of extensions: 696908
Number of successful extensions: 2734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2724
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)