| Clone Name | bart25f12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479772.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1767 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 436 acggacgagcagcgtcacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggct 495 ||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||||| Sbjct: 284 acggaggagcagcggcacgccatcgcgctcgccgtggcgacggcggcgaccgcggaggcg 343 Query: 496 gccgtggccacggc 509 || ||||| ||||| Sbjct: 344 gcggtggcgacggc 357 Score = 63.9 bits (32), Expect = 5e-07 Identities = 124/155 (80%), Gaps = 6/155 (3%) Strand = Plus / Plus Query: 208 tggctcaccgccgtcaagcgggcctttcgctcgccgtccaaggaggacagccccaagaag 267 |||||||||||||||||||| ||||| ||||| || || ||||| ||| |||||| ||| Sbjct: 74 tggctcaccgccgtcaagcgcgccttccgctccccctctaaggacgactcccccaacaag 133 Query: 268 tctgcacgcctgcgcgaggaccccgacgccgacgaggataagaccaagagggagaggagg 327 | || ||||| ||||| |||| ||||||| || ||| |||||||||| | | Sbjct: 134 gccgcccgcctccgcga------cgacaccgacgacgacaagggcaagagggagcgccgc 187 Query: 328 agatggctcttcaggagatcctcgtccccgtctcc 362 |||||||||||||||| |||||||| |||||||| Sbjct: 188 agatggctcttcaggaagtcctcgtcgccgtctcc 222
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 436 acggacgagcagcgtcacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggct 495 ||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||||| Sbjct: 790776 acggaggagcagcggcacgccatcgcgctcgccgtggcgacggcggcgaccgcggaggcg 790717 Query: 496 gccgtggccacggc 509 || ||||| ||||| Sbjct: 790716 gcggtggcgacggc 790703 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 208 tggctcaccgccgtcaagcgggcctttcgctcgccgtccaaggaggacagccccaagaag 267 |||||||||||||||||||| ||||| ||||| || || ||||| ||| |||||| ||| Sbjct: 791063 tggctcaccgccgtcaagcgcgccttccgctccccctctaaggacgactcccccaacaag 791004 Query: 268 tctgcacgcctgcgcgaggaccccgacgccgac 300 | || ||||| ||||| ||| |||||| |||| Sbjct: 791003 gccgcccgcctccgcgacgacaccgacgacgac 790971 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 328 agatggctcttcaggagatcctcgtccccgtctcc 362 |||||||||||||||| |||||||| |||||||| Sbjct: 790872 agatggctcttcaggaagtcctcgtcgccgtctcc 790838
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0427G12 Length = 185545 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 436 acggacgagcagcgtcacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggct 495 ||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||||| Sbjct: 89996 acggaggagcagcggcacgccatcgcgctcgccgtggcgacggcggcgaccgcggaggcg 89937 Query: 496 gccgtggccacggc 509 || ||||| ||||| Sbjct: 89936 gcggtggcgacggc 89923 Score = 58.0 bits (29), Expect = 3e-05 Identities = 77/93 (82%) Strand = Plus / Minus Query: 208 tggctcaccgccgtcaagcgggcctttcgctcgccgtccaaggaggacagccccaagaag 267 |||||||||||||||||||| ||||| ||||| || || ||||| ||| |||||| ||| Sbjct: 90283 tggctcaccgccgtcaagcgcgccttccgctccccctctaaggacgactcccccaacaag 90224 Query: 268 tctgcacgcctgcgcgaggaccccgacgccgac 300 | || ||||| ||||| ||| |||||| |||| Sbjct: 90223 gccgcccgcctccgcgacgacaccgacgacgac 90191 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 328 agatggctcttcaggagatcctcgtccccgtctcc 362 |||||||||||||||| |||||||| |||||||| Sbjct: 90092 agatggctcttcaggaagtcctcgtcgccgtctcc 90058
>dbj|AK100461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091O18, full insert sequence Length = 1767 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 436 acggacgagcagcgtcacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggct 495 ||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||||| Sbjct: 284 acggaggagcagcggcacgccatcgcgctcgccgtggcgacggcggcgaccgcggaggcg 343 Query: 496 gccgtggccacggc 509 || ||||| ||||| Sbjct: 344 gcggtggcgacggc 357 Score = 63.9 bits (32), Expect = 5e-07 Identities = 124/155 (80%), Gaps = 6/155 (3%) Strand = Plus / Plus Query: 208 tggctcaccgccgtcaagcgggcctttcgctcgccgtccaaggaggacagccccaagaag 267 |||||||||||||||||||| ||||| ||||| || || ||||| ||| |||||| ||| Sbjct: 74 tggctcaccgccgtcaagcgcgccttccgctccccctctaaggacgactcccccaacaag 133 Query: 268 tctgcacgcctgcgcgaggaccccgacgccgacgaggataagaccaagagggagaggagg 327 | || ||||| ||||| |||| ||||||| || ||| |||||||||| | | Sbjct: 134 gccgcccgcctccgcga------cgacaccgacgacgacaagggcaagagggagcgccgc 187 Query: 328 agatggctcttcaggagatcctcgtccccgtctcc 362 |||||||||||||||| |||||||| |||||||| Sbjct: 188 agatggctcttcaggaagtcctcgtcgccgtctcc 222
>ref|NM_189657.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1398 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 451 cacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggctgccgtggc 503 |||||||||||| |||||| |||||||||||| |||| || || |||||||| Sbjct: 259 cacgccatcgcggtcgccgcggcgaccgcggctgcggcggacgcggccgtggc 311
>ref|NM_190363.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2844 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 462 gctcgccgtggcgaccgcggcgacggccg 490 ||||||||||||| ||||||||||||||| Sbjct: 42 gctcgccgtggcggccgcggcgacggccg 70
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 462 gctcgccgtggcgaccgcggcgacggccg 490 ||||||||||||| ||||||||||||||| Sbjct: 35078806 gctcgccgtggcggccgcggcgacggccg 35078778 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 451 cacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggctgccgtggc 503 |||||||||||| |||||| |||||||||||| |||| || || |||||||| Sbjct: 4825961 cacgccatcgcggtcgccgcggcgaccgcggctgcggcggacgcggccgtggc 4826013 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 312 caagagggagaggaggagatggc 334 ||||||||||||||||||||||| Sbjct: 22690182 caagagggagaggaggagatggc 22690204
>dbj|AP003348.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485B12 Length = 156047 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 462 gctcgccgtggcgaccgcggcgacggccg 490 ||||||||||||| ||||||||||||||| Sbjct: 85956 gctcgccgtggcggccgcggcgacggccg 85928
>dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0703B11 Length = 144074 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 462 gctcgccgtggcgaccgcggcgacggccg 490 ||||||||||||| ||||||||||||||| Sbjct: 123034 gctcgccgtggcggccgcggcgacggccg 123006
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 451 cacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggctgccgtggc 503 |||||||||||| |||||| |||||||||||| |||| || || |||||||| Sbjct: 70610 cacgccatcgcggtcgccgcggcgaccgcggctgcggcggacgcggccgtggc 70662
>dbj|AK119868.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-B12, full insert sequence Length = 1834 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 451 cacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggctgccgtggc 503 |||||||||||| |||||| |||||||||||| |||| || || |||||||| Sbjct: 372 cacgccatcgcggtcgccgcggcgaccgcggctgcggcggacgcggccgtggc 424
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Plus Query: 451 cacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggctgccgtggccacggc 509 |||||||| ||| |||| |||||||||||||| | ||||| || ||||||||| |||| Sbjct: 3292496 cacgccatggcggtcgcggtggcgaccgcggccgccgccgacgccgccgtggccgcggc 3292554 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 agagggagaggaggagatggc 334 ||||||||||||||||||||| Sbjct: 30251165 agagggagaggaggagatggc 30251145
>ref|XM_745645.1| Aspergillus fumigatus Af293 inorganic diphosphatase (Afu6g08490) partial mRNA Length = 1011 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 153 cagcaaccgcgagccggtggtgc 175 ||||||||||||||||||||||| Sbjct: 345 cagcaaccgcgagccggtggtgc 367
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Minus Query: 451 cacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggctgccgtggccacggc 509 |||||||| ||| |||| |||||||||||||| | ||||| || ||||||||| |||| Sbjct: 136718 cacgccatggcggtcgcggtggcgaccgcggccgccgccgacgccgccgtggccgcggc 136660
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Plus Query: 451 cacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggctgccgtggccacggc 509 |||||||| ||| |||| |||||||||||||| | ||||| || ||||||||| |||| Sbjct: 3292607 cacgccatggcggtcgcggtggcgaccgcggccgccgccgacgccgccgtggccgcggc 3292665 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 agagggagaggaggagatggc 334 ||||||||||||||||||||| Sbjct: 30342587 agagggagaggaggagatggc 30342567
>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083G16, complete sequence Length = 145590 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Plus Query: 451 cacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggctgccgtggccacggc 509 |||||||| ||| |||| |||||||||||||| | ||||| || ||||||||| |||| Sbjct: 117369 cacgccatggcggtcgcggtggcgaccgcggccgccgccgacgccgccgtggccgcggc 117427
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 453 cgccatcgcgctcgccgtggcga 475 ||||||||||||||||||||||| Sbjct: 3984807 cgccatcgcgctcgccgtggcga 3984829
>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06 Length = 129402 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 312 caagagggagaggaggagatggc 334 ||||||||||||||||||||||| Sbjct: 66894 caagagggagaggaggagatggc 66916
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 312 caagagggagaggaggagatggc 334 ||||||||||||||||||||||| Sbjct: 7571 caagagggagaggaggagatggc 7593
>ref|XM_417875.1| PREDICTED: Gallus gallus similar to Sorting nexin 19 (LOC419734), mRNA Length = 2771 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 248 aggaggacagccccaagaagtc 269 |||||||||||||||||||||| Sbjct: 1025 aggaggacagccccaagaagtc 1046
>ref|XM_476075.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1494 Score = 42.1 bits (21), Expect = 1.8 Identities = 45/53 (84%) Strand = Plus / Plus Query: 451 cacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggctgccgtggc 503 ||||||||||| |||||| ||| ||||||||| |||| || || |||||||| Sbjct: 250 cacgccatcgccgtcgccgcggccaccgcggcggcggctgatgccgccgtggc 302
>ref|XM_976638.1| PREDICTED: Mus musculus gene model 1078, (NCBI) (Gm1078), mRNA Length = 3146 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 aagagggagaggaggagatgg 333 ||||||||||||||||||||| Sbjct: 1510 aagagggagaggaggagatgg 1490
>ref|XM_911944.2| PREDICTED: Mus musculus gene model 1078, (NCBI) (Gm1078), mRNA Length = 3160 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 aagagggagaggaggagatgg 333 ||||||||||||||||||||| Sbjct: 1510 aagagggagaggaggagatgg 1490
>ref|XM_355840.5| PREDICTED: Mus musculus gene model 1078, (NCBI) (Gm1078), mRNA Length = 3146 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 aagagggagaggaggagatgg 333 ||||||||||||||||||||| Sbjct: 1510 aagagggagaggaggagatgg 1490
>gb|AC025456.7| Homo sapiens chromosome 5 clone CTD-2197O4, complete sequence Length = 139086 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 310 accaagagggagaggaggaga 330 ||||||||||||||||||||| Sbjct: 85651 accaagagggagaggaggaga 85631
>dbj|AK138915.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530002D02 product:hypothetical Protein kinase/Serine/threonine protein kinase/Tyrosine protein kinase/Protein kinase domain profile/Proline-rich region profile/Protein kinase-like/Myb DNA-binding domain/Serine/threonine protein kinase, active site containing protein, full insert sequence Length = 3154 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 aagagggagaggaggagatgg 333 ||||||||||||||||||||| Sbjct: 1518 aagagggagaggaggagatgg 1498
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 agcagcgtcacgccatcgcgc 463 ||||||||||||||||||||| Sbjct: 4315060 agcagcgtcacgccatcgcgc 4315080
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 agagggagaggaggagatggc 334 ||||||||||||||||||||| Sbjct: 42845 agagggagaggaggagatggc 42825
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.8 Identities = 45/53 (84%) Strand = Plus / Plus Query: 451 cacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggctgccgtggc 503 ||||||||||| |||||| ||| ||||||||| |||| || || |||||||| Sbjct: 5308984 cacgccatcgccgtcgccgcggccaccgcggcggcggctgatgccgccgtggc 5309036 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 cggcggcgaggtcggcacct 423 |||||||||||||||||||| Sbjct: 15568025 cggcggcgaggtcggcacct 15568044
>gb|AC157563.12| Mus musculus chromosome 7, clone RP23-414I24, complete sequence Length = 200040 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 aagagggagaggaggagatgg 333 ||||||||||||||||||||| Sbjct: 133798 aagagggagaggaggagatgg 133818
>gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1097_A12, complete sequence Length = 88725 Score = 42.1 bits (21), Expect = 1.8 Identities = 45/53 (84%) Strand = Plus / Plus Query: 451 cacgccatcgcgctcgccgtggcgaccgcggcgacggccgaggctgccgtggc 503 ||||||||||| |||||| ||| ||||||||| |||| || || |||||||| Sbjct: 45685 cacgccatcgccgtcgccgcggccaccgcggcggcggctgatgccgccgtggc 45737
>gb|AC138604.5| Mus musculus BAC clone RP24-236J11 from chromosome 15, complete sequence Length = 196777 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 gaccaagagggagaggaggagatg 332 ||||||||||||||| |||||||| Sbjct: 97570 gaccaagagggagagaaggagatg 97547
>ref|XM_517941.1| PREDICTED: Pan troglodytes similar to Ptx1 (LOC462072), mRNA Length = 1736 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 6 ccccactgcccgcgcctgccagccgcgg 33 |||||||||||||||| |||| |||||| Sbjct: 592 ccccactgcccgcgccggccacccgcgg 565
>ref|NM_015711.1| Homo sapiens glioma tumor suppressor candidate region gene 1 (GLTSCR1), mRNA Length = 5698 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 gccccccactgcccgcgcctgcca 26 ||||| |||||||||||||||||| Sbjct: 4345 gccccgcactgcccgcgcctgcca 4368
>gb|AC120889.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0018K14, complete sequence Length = 152725 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ccgcgcctgccagccgcggc 34 |||||||||||||||||||| Sbjct: 40268 ccgcgcctgccagccgcggc 40287
>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064E13, complete sequence Length = 150158 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ccgcgcctgccagccgcggc 34 |||||||||||||||||||| Sbjct: 129458 ccgcgcctgccagccgcggc 129477
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 cgcgccgccggagcagcagc 400 |||||||||||||||||||| Sbjct: 3550380 cgcgccgccggagcagcagc 3550399
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 cagcgtcacgccatcgcgctcgcc 468 ||||||||||||| |||||||||| Sbjct: 4094233 cagcgtcacgccaccgcgctcgcc 4094256
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 gccgtggcgaccgcggcgac 485 |||||||||||||||||||| Sbjct: 731102 gccgtggcgaccgcggcgac 731121 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 472 gcgaccgcggcgacggccgaggctgccg 499 ||||| |||||| ||||||||||||||| Sbjct: 98989 gcgacagcggcggcggccgaggctgccg 98962
>emb|AL136128.9| Human DNA sequence from clone RP1-84N20 on chromosome 6 Contains a novel gene, the 5' end of the TPD52L1 gene encoding two variants of tumor protein D52-like 1 protein and two CpG islands, complete sequence Length = 151875 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 aaggaggacagccccaagaa 266 |||||||||||||||||||| Sbjct: 77856 aaggaggacagccccaagaa 77875
>gb|AF539828.1| Mycosphaerella sp. 2 SAP154 strain SAP154 laccase gene, partial cds Length = 1063 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 aatcggcggcgaggtcggca 420 |||||||||||||||||||| Sbjct: 1035 aatcggcggcgaggtcggca 1016
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 465 cgccgtggcgaccgcggcgacggc 488 ||||| |||||||||||||||||| Sbjct: 106964 cgccgcggcgaccgcggcgacggc 106987
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 ggcgaccgcggcgacggccg 490 |||||||||||||||||||| Sbjct: 1078488 ggcgaccgcggcgacggccg 1078469
>emb|AL445066.1|TACID4 Thermoplasma acidophilum complete genome; segment 4/5 Length = 297750 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tggctcttcaggagatcctc 350 |||||||||||||||||||| Sbjct: 253629 tggctcttcaggagatcctc 253648
>gb|AC010519.8| Homo sapiens chromosome 19 clone LLNLR-261D9, complete sequence Length = 46741 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 gccccccactgcccgcgcctgcca 26 ||||| |||||||||||||||||| Sbjct: 24998 gccccgcactgcccgcgcctgcca 25021
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 gaccaagagggagaggagga 328 |||||||||||||||||||| Sbjct: 1202124 gaccaagagggagaggagga 1202105
>dbj|AK097153.1| Homo sapiens cDNA FLJ39834 fis, clone SPLEN2014041, highly similar to Homo sapiens glioma tumor suppressor candidate region protein 1 (GLTSCR1) mRNA Length = 3321 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 gccccccactgcccgcgcctgcca 26 ||||| |||||||||||||||||| Sbjct: 1914 gccccgcactgcccgcgcctgcca 1937
>gb|AE011990.1| Xanthomonas axonopodis pv. citri str. 306, section 368 of 469 of the complete genome Length = 12292 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 cagcgtcacgccatcgcgctcgcc 468 ||||||||||||| |||||||||| Sbjct: 10639 cagcgtcacgccaccgcgctcgcc 10662
>gb|AE012454.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 362 of 460 of the complete genome Length = 11605 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cgcgagccggtggtgcccgc 179 |||||||||||||||||||| Sbjct: 6147 cgcgagccggtggtgcccgc 6128
>ref|NM_137155.2| Drosophila melanogaster lethal (2) k08015 CG10228-RA (l(2)k08015), mRNA Length = 6068 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 ggataagaccaagagggaga 322 |||||||||||||||||||| Sbjct: 2915 ggataagaccaagagggaga 2934
>gb|AC008406.7| Homo sapiens chromosome 5 clone CTC-276P9, complete sequence Length = 178030 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 6 ccccactgcccgcgcctgccagccgcgg 33 |||||||||||||||| |||| |||||| Sbjct: 22719 ccccactgcccgcgccggccacccgcgg 22746
>gb|AC008472.8| Homo sapiens chromosome 5 clone CTC-367J11, complete sequence Length = 107733 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 gaccaagagggagaggaggagatg 332 |||||||||||| ||||||||||| Sbjct: 82871 gaccaagagggaaaggaggagatg 82848
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 gcgtcacgccatcgcgctcg 466 |||||||||||||||||||| Sbjct: 396580 gcgtcacgccatcgcgctcg 396599
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 463 ctcgccgtggcgaccgcggcgacggccg 490 ||||||| | |||||||||||||||||| Sbjct: 2587512 ctcgccgcgacgaccgcggcgacggccg 2587539 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 tcggcggcgaggtcggcacc 422 |||||||||||||||||||| Sbjct: 1339037 tcggcggcgaggtcggcacc 1339018
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cgcgagccggtggtgcccgc 179 |||||||||||||||||||| Sbjct: 965803 cgcgagccggtggtgcccgc 965822
>gb|AY686748.1| Rubrivivax gelatinosus strain 1 GprR (gprR) gene, partial cds; Rieske iron-sulfur protein (petA2) gene, complete cds; and FdxA (fdxA) gene, partial cds Length = 2234 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 tcgccgtggcgaccgcggcg 483 |||||||||||||||||||| Sbjct: 1035 tcgccgtggcgaccgcggcg 1016
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 cgccgccggagcagcagcaa 402 |||||||||||||||||||| Sbjct: 28341002 cgccgccggagcagcagcaa 28341021
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ccgcgcctgccagccgcggc 34 |||||||||||||||||||| Sbjct: 20120244 ccgcgcctgccagccgcggc 20120263
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 gcgccgccggagcagcagca 401 |||||||||||||||||||| Sbjct: 3836028 gcgccgccggagcagcagca 3836009
>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone BACR03K23, complete sequence Length = 160346 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ggataagaccaagagggaga 322 |||||||||||||||||||| Sbjct: 141275 ggataagaccaagagggaga 141256
>gb|AF182077.1|AF182077 Homo sapiens glioma tumor suppressor candidate region protein 1 (GLTSCR1) mRNA, complete cds Length = 5698 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 gccccccactgcccgcgcctgcca 26 ||||| |||||||||||||||||| Sbjct: 4345 gccccgcactgcccgcgcctgcca 4368
>dbj|AP006620.1| Nocardia farcinica IFM 10152 plasmid pNF2 DNA, complete sequence Length = 87093 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 ccttccccggcgtctgctaccgcg 384 |||||||||||||| ||||||||| Sbjct: 27495 ccttccccggcgtcagctaccgcg 27518
>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1080A02 Length = 151360 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 gcgccgccggagcagcagca 401 |||||||||||||||||||| Sbjct: 75544 gcgccgccggagcagcagca 75525
>gb|AY107613.1| Zea mays PCO107505 mRNA sequence Length = 1058 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 gcgccgccggagcagcagca 401 |||||||||||||||||||| Sbjct: 646 gcgccgccggagcagcagca 627
>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete sequence Length = 266851 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ggataagaccaagagggaga 322 |||||||||||||||||||| Sbjct: 233618 ggataagaccaagagggaga 233599
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 457 atcgcgctcgccgtggcgaccgcg 480 ||||||||||||| |||||||||| Sbjct: 1575151 atcgcgctcgccgcggcgaccgcg 1575128
>gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0049D13, complete sequence Length = 136942 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 cggcggcgaggtcggcacct 423 |||||||||||||||||||| Sbjct: 99855 cggcggcgaggtcggcacct 99874
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ccgcgcctgccagccgcggc 34 |||||||||||||||||||| Sbjct: 20405350 ccgcgcctgccagccgcggc 20405369
>emb|AL606628.3|OSJN00055 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence Length = 150957 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 cgccgccggagcagcagcaa 402 |||||||||||||||||||| Sbjct: 133310 cgccgccggagcagcagcaa 133329
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 ggcgaccgcggcgacggccg 490 |||||||||||||||||||| Sbjct: 2588174 ggcgaccgcggcgacggccg 2588193 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,014,789 Number of Sequences: 3902068 Number of extensions: 4014789 Number of successful extensions: 93675 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90927 Number of HSP's gapped (non-prelim): 2748 length of query: 513 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 490 effective length of database: 17,143,297,704 effective search space: 8400215874960 effective search space used: 8400215874960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)