ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart25f01 |
|---|---|
| Clone Library Name | barley_pub |
>POZP3_HUMAN (Q6PJE2) POM121 and ZP3 fusion protein (POM-ZP3)| Length = 329 Score = 37.0 bits (84), Expect = 0.040 Identities = 18/38 (47%), Positives = 19/38 (50%) Frame = +1 Query: 58 RPGLRPPCRRAVSGRRPLPPLRAQDSARPSSPTPSVRP 171 RPG RPP R A P PP PS PTP +RP Sbjct: 25 RPGRRPPARPAPRSTPPSPPTHRVHHFYPSLPTPLLRP 62
>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1229 Score = 37.0 bits (84), Expect = 0.040 Identities = 18/38 (47%), Positives = 19/38 (50%) Frame = +1 Query: 58 RPGLRPPCRRAVSGRRPLPPLRAQDSARPSSPTPSVRP 171 RPG RPP R A P PP PS PTP +RP Sbjct: 148 RPGRRPPARPAPRSTPPSPPTHRVHHFYPSLPTPLLRP 185
>MTMR1_HUMAN (Q13613) Myotubularin-related protein 1 (EC 3.1.3.-)| Length = 665 Score = 32.3 bits (72), Expect = 0.99 Identities = 16/41 (39%), Positives = 17/41 (41%) Frame = -2 Query: 211 MERPAXXXXQRCRTGGRTESGRTDGRSPVRAAEAGADARRQ 89 M+RPA C GG G GR P RAA RQ Sbjct: 1 MDRPAAAAAAGCEGGGGPNPGPAGGRRPPRAAGGATAGSRQ 41
>FTSK_CLOPE (Q8XJS8) DNA translocase ftsK| Length = 796 Score = 32.0 bits (71), Expect = 1.3 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Frame = +1 Query: 322 GMKNDNALQPPNASTSVMNVIRRKVEPETAKYFL---EISNLFDNKEIDLEDRSTICANA 492 G ++ A + + + N I K A Y ++ NL +N E+D +D+ + ANA Sbjct: 290 GFNSEKAKEEESIDKEISNNIASKGSSVGASYVAPNADLLNLNNNNELDKDDKKALLANA 349 Query: 493 --LEETKGKELELVTDGVISHTLQI 561 LEET L++ GV + LQ+ Sbjct: 350 AKLEET------LMSFGVEAKILQV 368
>VE2_HPV5B (P26545) Regulatory protein E2| Length = 514 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/21 (66%), Positives = 15/21 (71%) Frame = -1 Query: 125 ARSGGRGRRPETARRHGGRSP 63 +RS RGR P T RR GGRSP Sbjct: 308 SRSRSRGRSPSTCRRGGGRSP 328
>VE2_HPV05 (P06921) Regulatory protein E2| Length = 514 Score = 31.6 bits (70), Expect = 1.7 Identities = 14/21 (66%), Positives = 15/21 (71%) Frame = -1 Query: 125 ARSGGRGRRPETARRHGGRSP 63 +RS RGR P T RR GGRSP Sbjct: 308 SRSRSRGRSPTTCRRGGGRSP 328
>EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)| Length = 5065 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Frame = +3 Query: 237 EERPSGREHGQGAWKGP----PIGQFEGDESRGHEE 332 EE P R Q AW+GP P G+ +GD R E Sbjct: 4690 EEAPGARPQLQDAWRGPREPGPAGRGDGDSGRSQRE 4725 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Frame = +3 Query: 237 EERPSGREHGQGAWKGP----PIGQFEGDESRGHEE 332 EE P R Q AW+GP P G+ +GD R E Sbjct: 4156 EEAPGARPQLQDAWRGPREPGPAGRGDGDSGRSQRE 4191 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Frame = +3 Query: 237 EERPSGREHGQGAWKGP----PIGQFEGDESRGHEE 332 EE P R Q AW+GP P G+ +GD R E Sbjct: 3622 EEAPGARPQLQDAWRGPREPGPAGRGDGDSGRSQRE 3657 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%) Frame = +3 Query: 237 EERPSGREHGQGAWKGP----PIGQFEGDESRGHEE 332 EE P R Q AW+GP P G+ +GD R E Sbjct: 3088 EEAPGARPQLQDAWRGPREPGPAGRGDGDSGRSQRE 3123
>NSD1_MOUSE (O88491) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) Length = 2588 Score = 30.8 bits (68), Expect = 2.9 Identities = 19/36 (52%), Positives = 21/36 (58%) Frame = +1 Query: 58 RPGLRPPCRRAVSGRRPLPPLRAQDSARPSSPTPSV 165 RP RPP + G RP PP RA RPSS +PSV Sbjct: 2212 RPQDRPPAKE---GPRPQPPDRASPMTRPSS-SPSV 2243
>SYFB_THEVO (Q97B53) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 537 Score = 30.4 bits (67), Expect = 3.8 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +1 Query: 328 KNDNALQPPNASTSVMNVIRRKVEPETAKYFLEISNLFDN 447 KN L P ++N I K+EPET K+F++I+ + N Sbjct: 194 KNGGILSVP----PIVNGIMTKIEPETRKFFVDITGMDSN 229
>VGLG_HHV2H (P13290) Glycoprotein G| Length = 699 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = +1 Query: 52 PFRPGLRPPCRRAVSGRRPLPPLRAQDSARPSSPTPSVRP 171 P RP L P ++ P PP +A PS PTP P Sbjct: 599 PIRPTLPPGILGPLAPNTPRPPAQAPAKDMPSGPTPQHIP 638
>14333_ENTHI (P42650) 14-3-3 protein 3 (14-3-3-3) (Fragment)| Length = 236 Score = 29.6 bits (65), Expect = 6.4 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = +1 Query: 352 PNASTSVMNVIRRKVEPETAKYFLEISNLFDNKEIDLEDRSTICANALEETKGKEL 519 PNASTS V +K+E + +Y+ E + D K ++ D+S E +L Sbjct: 107 PNASTSESKVFYKKMEGDYYRYYAEFT--VDEKRQEVADKSLAAYTEATEISNADL 160
>SYW_WOLSU (Q7MAE0) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 328 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Frame = -3 Query: 573 TLYKNLQGVADDTISDKFELLPFGFFQSISADR-----RAVLQIYLLVIKEIRYLEEVFS 409 T+Y+ G + + I +FE +G F+ A+ + + + Y + KE YLEEV S Sbjct: 245 TIYQIFTGYSQEVIEAEFEGKGYGIFKVAVAEAVIEGLKPIQERYAKLTKEQGYLEEVLS 304
>RRP3_PROMA (Q7VA74) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)| Length = 126 Score = 29.3 bits (64), Expect = 8.4 Identities = 15/60 (25%), Positives = 29/60 (48%) Frame = +1 Query: 349 PPNASTSVMNVIRRKVEPETAKYFLEISNLFDNKEIDLEDRSTICANALEETKGKELELV 528 P N + +V ++ P TA +F + ++ + +LED++ I N E K E++ Sbjct: 39 PDNVALAVDQIVGGGTSPLTAYFFWPREDAWETLKTELEDKAWITDNERVEVLNKATEVI 98
>NKCL_MANSE (Q25479) Bumetanide-sensitive sodium-(potassium)-chloride| cotransporter (Na-K-CL symporter) Length = 1060 Score = 29.3 bits (64), Expect = 8.4 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%) Frame = +1 Query: 322 GMKNDNALQPPNASTSVMNVIRRKVEPETAKYFLEISNLFDNKEIDLEDRSTICANALEE 501 G K+D P N S NV+ E A + +S D + E A +L Sbjct: 725 GYKSDWTTCPANDLVSYFNVLHTAFENRLAVAIVRVSGGLDYSAVVSEGAEEGAAGSLTA 784 Query: 502 TKGK-ELELVTDGVISH 549 T EL + DG+I H Sbjct: 785 TSSSGELRVRRDGLIMH 801
>YJB0_YEAST (P47077) Hypothetical protein YJL010C| Length = 666 Score = 29.3 bits (64), Expect = 8.4 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +1 Query: 394 VEPETAKYFLEISNLFDNKEIDL-EDRSTICANALEETKGKELELVTDGVISHTLQILV 567 ++ E +YF + + + E++ + +EE KGKEL+LVT + S ++ ++ Sbjct: 56 LDREELEYFKQAESTLQLDAFEAPEEKFQFVTSIIEEAKGKELKLVTSQITSKLMERVI 114
>14331_ENTHI (P42648) 14-3-3 protein 1 (14-3-3-1)| Length = 239 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +1 Query: 352 PNASTSVMNVIRRKVEPETAKYFLEISNLFDNKEIDLEDRSTICANALEETKGKEL 519 P ASTS V +K+E + +YF E + D K ++ D+S E EL Sbjct: 110 PKASTSESKVFFKKMEGDYYRYFAEFT--VDEKRKEVADKSLAAYTEATEISNAEL 163
>PPNK_WOLSU (Q7MR67) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 290 Score = 29.3 bits (64), Expect = 8.4 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +1 Query: 343 LQPPNASTSVMNVIRRKVEPETAKYFLEISNLFDNKEIDL 462 L P +S S + VI R P ++FL++ +LF+ + I++ Sbjct: 3 LMQPLSSLSKVGVILRPSSPSLKEFFLQVRSLFEREGIEV 42 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.132 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,320,687 Number of Sequences: 219361 Number of extensions: 1487354 Number of successful extensions: 4095 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3769 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4078 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
