ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart25d12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 63.9 bits (32), Expect = 5e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 470 ctgaatgggcggagctaattgtcaaggagatgtcagctgcttcagatttgatcgacgcca 529 |||||||||| |||||| |||||||||||||||| ||||| ||||||| | || |||| Sbjct: 25779848 ctgaatgggctgagctagttgtcaaggagatgtcctctgctctagatttggttgatgcca 25779789 Query: 530 agaatcgagcct 541 |||| ||||||| Sbjct: 25779788 agaaccgagcct 25779777 Score = 44.1 bits (22), Expect = 0.50 Identities = 49/58 (84%) Strand = Plus / Minus Query: 318 ttttgaagcatcgggaaatgtgttggatgctgcaatcagaggcttcaaggatcatttg 375 ||||||||| || || ||||||||||| |||||||| || || |||||| ||| |||| Sbjct: 25780123 ttttgaagcgtccggtaatgtgttggacgctgcaattaggggattcaagcatcgtttg 25780066 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 tccagctcatcttccccggcgccg 295 ||||||||||| |||||||||||| Sbjct: 2145038 tccagctcatcctccccggcgccg 2145061
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 63.9 bits (32), Expect = 5e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 470 ctgaatgggcggagctaattgtcaaggagatgtcagctgcttcagatttgatcgacgcca 529 |||||||||| |||||| |||||||||||||||| ||||| ||||||| | || |||| Sbjct: 62052 ctgaatgggctgagctagttgtcaaggagatgtcctctgctctagatttggttgatgcca 61993 Query: 530 agaatcgagcct 541 |||| ||||||| Sbjct: 61992 agaaccgagcct 61981 Score = 44.1 bits (22), Expect = 0.50 Identities = 49/58 (84%) Strand = Plus / Minus Query: 318 ttttgaagcatcgggaaatgtgttggatgctgcaatcagaggcttcaaggatcatttg 375 ||||||||| || || ||||||||||| |||||||| || || |||||| ||| |||| Sbjct: 62327 ttttgaagcgtccggtaatgtgttggacgctgcaattaggggattcaagcatcgtttg 62270
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 212 ctgccgccgccgacgtggcgga 233 |||||||||||||||||||||| Sbjct: 2282224 ctgccgccgccgacgtggcgga 2282203
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 345 tgctgcaatcagaggcttcaaggatcatt 373 |||||||||| ||||||||||||| |||| Sbjct: 76291 tgctgcaatctgaggcttcaaggaccatt 76263
>gb|AE017141.1| Yersinia pestis biovar Medievalis str. 91001 section 15 of 16 of the complete genome Length = 293371 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 479 cggagctaattgtcaaggagatgtc 503 ||||||||||||||| ||||||||| Sbjct: 273718 cggagctaattgtcatggagatgtc 273694
>gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, complete sequence Length = 168158 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 gcggccggaagcgcggggcgg 136 ||||||||||||||||||||| Sbjct: 132446 gcggccggaagcgcggggcgg 132426
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 479 cggagctaattgtcaaggagatgtc 503 ||||||||||||||| ||||||||| Sbjct: 144400 cggagctaattgtcatggagatgtc 144376
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 345 tgctgcaatcagaggcttcaaggatcatt 373 |||||||||| ||||||||||||| |||| Sbjct: 2038868 tgctgcaatctgaggcttcaaggaccatt 2038840
>ref|XM_973995.1| PREDICTED: Mus musculus hypothetical protein LOC665013 (LOC665013), mRNA Length = 852 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 gcggccggaagcgcggggcgg 136 ||||||||||||||||||||| Sbjct: 658 gcggccggaagcgcggggcgg 638
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 479 cggagctaattgtcaaggagatgtc 503 ||||||||||||||| ||||||||| Sbjct: 4176200 cggagctaattgtcatggagatgtc 4176176
>emb|AJ414157.1| Yersinia pestis strain CO92 complete genome; segment 17/20 Length = 216050 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 479 cggagctaattgtcaaggagatgtc 503 ||||||||||||||| ||||||||| Sbjct: 174636 cggagctaattgtcatggagatgtc 174612
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 345 tgctgcaatcagaggcttcaaggatcatt 373 |||||||||| ||||||||||||| |||| Sbjct: 2038880 tgctgcaatctgaggcttcaaggaccatt 2038852
>dbj|AK065303.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N24, full insert sequence Length = 1979 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 345 tgctgcaatcagaggcttcaaggatcatt 373 |||||||||| ||||||||||||| |||| Sbjct: 910 tgctgcaatctgaggcttcaaggaccatt 882
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 gccagcatgacggcgaaggtg 111 ||||||||||||||||||||| Sbjct: 2636182 gccagcatgacggcgaaggtg 2636162
>gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, complete sequence Length = 233632 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 gcggccggaagcgcggggcgg 136 ||||||||||||||||||||| Sbjct: 20528 gcggccggaagcgcggggcgg 20508
>ref|XM_473084.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1968 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 gctcgccgtctgccgccgccgacg 226 |||||||||||||||||| ||||| Sbjct: 71 gctcgccgtctgccgccggcgacg 94
>gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0036H01, complete sequence Length = 182504 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 100 acggcgaaggtggcgggcggccgg 123 ||||||||||||||| |||||||| Sbjct: 34601 acggcgaaggtggcgcgcggccgg 34624
>gb|AY659256.1| Synthetic construct Peudomonas aeruginosa clone FLH041907.01F PA3913 gene, partial cds Length = 996 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 cgccgccgacgtggcggagctcgg 239 ||||||||||||||||| |||||| Sbjct: 279 cgccgccgacgtggcggtgctcgg 302
>gb|AC121604.3| Mus musculus BAC clone RP23-312E2 from chromosome 8, complete sequence Length = 209383 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ggaggccttcttggaggagg 154 |||||||||||||||||||| Sbjct: 46015 ggaggccttcttggaggagg 45996
>ref|XM_001001250.1| PREDICTED: Mus musculus calpain, small subunit 2 (Capns2), mRNA Length = 1006 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ggaggccttcttggaggagg 154 |||||||||||||||||||| Sbjct: 139 ggaggccttcttggaggagg 158
>ref|XM_912741.2| PREDICTED: Mus musculus calpain, small subunit 2 (Capns2), mRNA Length = 1006 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ggaggccttcttggaggagg 154 |||||||||||||||||||| Sbjct: 139 ggaggccttcttggaggagg 158
>ref|XM_894405.2| PREDICTED: Mus musculus calpain, small subunit 2 (Capns2), mRNA Length = 1006 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ggaggccttcttggaggagg 154 |||||||||||||||||||| Sbjct: 139 ggaggccttcttggaggagg 158
>ref|XM_848764.1| PREDICTED: Canis familiaris similar to CG6913-PA (LOC611122), mRNA Length = 603 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ggcgggcggccggaagcgcg 130 |||||||||||||||||||| Sbjct: 138 ggcgggcggccggaagcgcg 157
>ref|XM_812137.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510759.70) partial mRNA Length = 2814 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 gctgaacacgaagagggggcgatg 203 |||||||||||||||| ||||||| Sbjct: 397 gctgaacacgaagaggaggcgatg 420
>gb|AC127433.1| Mus musculus BAC clone RP23-151I7 from 1, complete sequence Length = 228489 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 agcatcgggaaatgtgttgg 343 |||||||||||||||||||| Sbjct: 79456 agcatcgggaaatgtgttgg 79475
>ref|XM_544399.2| PREDICTED: Canis familiaris similar to calpain small subunit 2 (LOC487273), mRNA Length = 756 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ggaggccttcttggaggagg 154 |||||||||||||||||||| Sbjct: 58 ggaggccttcttggaggagg 77
>emb|AL772284.5| Human DNA sequence from clone RP13-347D8 on chromosome X Contains a pseudogene similar to part of KIAA0633 protein (COBL), the RNF127 gene for ring finger protein 127 (FLJ40322, FLJ34458, FLJ22612), gene KIAA1210 and three CpG islands, complete sequence Length = 186148 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 gaggccttcttggaggaggacccc 159 ||||||||| |||||||||||||| Sbjct: 93229 gaggccttcatggaggaggacccc 93206
>emb|AL365356.13| Human DNA sequence from clone RP11-336A10 on chromosome 10 Contains the ASB13 gene for ankyrin repeat and SOCS box-containing 13, the 5' end of gene FLJ20360 (KIAA2006 FLJ34073 FLJ12904 FLJ23361 FLJ21109), three novel genes, a ribosomal protein L23a (RPL23A) pseudogene, the 5' end of a novel gene and two CpG islands, complete sequence Length = 167676 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tccagctcatcttccccggc 291 |||||||||||||||||||| Sbjct: 22649 tccagctcatcttccccggc 22630
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gccgacgtggcggagctcgg 239 |||||||||||||||||||| Sbjct: 576681 gccgacgtggcggagctcgg 576700
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 gctcgccgtctgccgccgccgacg 226 |||||||||||||||||| ||||| Sbjct: 39459 gctcgccgtctgccgccggcgacg 39482
>emb|AJ310530.1|PPU310530 Pseudomonas putida non-ribosomal peptide synthetase (ppsD gene) Length = 7493 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 tggcgtctggttcagcaccg 393 |||||||||||||||||||| Sbjct: 2406 tggcgtctggttcagcaccg 2387
>gb|DP000042.1| Lemur catta target 106 genomic scaffold Length = 452647 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ggaggccttcttggaggagg 154 |||||||||||||||||||| Sbjct: 444234 ggaggccttcttggaggagg 444215
>dbj|AK009171.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310005G05 product:CALPAIN SMALL SUBUNIT 2 homolog [Homo sapiens], full insert sequence Length = 1002 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ggaggccttcttggaggagg 154 |||||||||||||||||||| Sbjct: 137 ggaggccttcttggaggagg 156
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 gctcgccgtctgccgccgccgacg 226 |||||||||||||||||| ||||| Sbjct: 25157792 gctcgccgtctgccgccggcgacg 25157815
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 acggcgaaggtggcgggcggccgg 123 ||||||||||||||| |||||||| Sbjct: 12133471 acggcgaaggtggcgcgcggccgg 12133448
>gb|AE004808.1| Pseudomonas aeruginosa PAO1, section 369 of 529 of the complete genome Length = 10280 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 cgccgccgacgtggcggagctcgg 239 ||||||||||||||||| |||||| Sbjct: 9915 cgccgccgacgtggcggtgctcgg 9892
>dbj|AP000399.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0535G04 Length = 154180 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 tccagctcatcttccccggcgccg 295 ||||||||||| |||||||||||| Sbjct: 4495 tccagctcatcctccccggcgccg 4518
>emb|Z15088.1|RCORF1920 R.capsulatus genes for ORF19 and ORF20 Length = 4920 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ccccggcgccgatccgcagc 304 |||||||||||||||||||| Sbjct: 4882 ccccggcgccgatccgcagc 4863
>dbj|AK065683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037K06, full insert sequence Length = 2936 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 tccagctcatcttccccggcgccg 295 ||||||||||| |||||||||||| Sbjct: 185 tccagctcatcctccccggcgccg 162
>gb|AF070992.1|AF070992 Homo sapiens HPV-16 E2 binding protein (E2BP-1) mRNA, complete cds Length = 2313 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gctcgccgtctgccgccgcc 222 |||||||||||||||||||| Sbjct: 148 gctcgccgtctgccgccgcc 129
>gb|AC164569.3| Gallus gallus BAC clone CH261-138K23 from chromosome unknown, complete sequence Length = 248284 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gccggaagcgcggggcggag 138 |||||||||||||||||||| Sbjct: 1294 gccggaagcgcggggcggag 1275
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 acggcgaaggtggcgggcggccgg 123 ||||||||||||||| |||||||| Sbjct: 12212778 acggcgaaggtggcgcgcggccgg 12212755
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 gctcgccgtctgccgccgccgacg 226 |||||||||||||||||| ||||| Sbjct: 105219 gctcgccgtctgccgccggcgacg 105242
>gb|AC140217.3| Mus musculus BAC clone RP23-279O5 from 8, complete sequence Length = 224205 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ggaggccttcttggaggagg 154 |||||||||||||||||||| Sbjct: 140955 ggaggccttcttggaggagg 140936
>gb|AC156158.1| Homo sapiens chromosome 10 clone WI2-1708O12, complete sequence Length = 43308 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 tccagctcatcttccccggc 291 |||||||||||||||||||| Sbjct: 36678 tccagctcatcttccccggc 36659 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,494,954 Number of Sequences: 3902068 Number of extensions: 3494954 Number of successful extensions: 69197 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68423 Number of HSP's gapped (non-prelim): 774 length of query: 576 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 553 effective length of database: 17,143,297,704 effective search space: 9480243630312 effective search space used: 9480243630312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
