ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart24g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 111 3e-21
3gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 111 3e-21
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
5dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
6emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4,... 46 0.13
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
8dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
9ref|NM_188604.1| Oryza sativa (japonica cultivar-group), Ozsa820... 44 0.50
10gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 geno... 44 0.50
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
12dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
13gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 geno... 44 0.50
14dbj|AK073842.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.50
15gb|AY785901.1| Triticum aestivum cultivar Chinese Spring TaCBF14... 42 2.0
16gb|CP000243.1| Escherichia coli UTI89, complete genome 42 2.0
17gb|DQ151545.1| Hordeum vulgare subsp. vulgare cultivar Morex CBF... 42 2.0
18gb|DQ095159.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo H... 42 2.0
19gb|AY951948.1| Triticum monococcum CRT/DRE binding factor 14 (CB... 42 2.0
20dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
22ref|XM_580001.1| PREDICTED: Rattus norvegicus LOC499665 (LOC4996... 42 2.0
23gb|AF530054.1| Azospirillum brasilense Yu62 clpP-tig gene cluster 42 2.0
24gb|AY572831.1| Triticum aestivum C repeat-binding factor 2 mRNA,... 42 2.0
25dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
26dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
27dbj|AK100562.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
28ref|XM_463927.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.8
29ref|XM_463319.1| Oryza sativa (japonica cultivar-group), predic... 40 7.8
30gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, compl... 40 7.8
31gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 7.8
32gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
33gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 7.8
34gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
35gb|AC110574.9| Mus musculus chromosome 3, clone RP23-324B15, com... 40 7.8
36emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.8
37emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 40 7.8
38gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 7.8
39gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.8
40gb|AY082962.1| Hordeum vulgare clone HVSMEb0009D03f CONSTANS-lik... 40 7.8
41gb|AY082961.1| Hordeum vulgare clone HVSMEc0008O24f CONSTANS-lik... 40 7.8
42gb|AY082960.1| Hordeum vulgare CONSTANS-like protein CO6 (CO6) g... 40 7.8
43emb|AL112915.1|CNS01AGR Botrytis cinerea strain T4 cDNA library 40 7.8
44dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
45dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
46dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
47dbj|AP004137.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
48dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.8
49dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 7.8
50dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
51emb|CT573086.9| Mouse DNA sequence from clone RP23-163K5 on chro... 40 7.8
52gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 7.8
53dbj|AP003155.1| Mus musculus genomic DNA, chromosome 16q clone:R... 40 7.8
54gb|AC154234.1| Mus musculus BAC clone RP24-345H5 from 16, comple... 40 7.8
55emb|AL805960.10| Mouse DNA sequence from clone RP23-20P17 on chr... 40 7.8
56dbj|AP006092.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 7.8
57dbj|AP004511.1| Lotus japonicus genomic DNA, chromosome 6, clone... 40 7.8 
>dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118I15, full
           insert sequence
          Length = 1518

 Score =  115 bits (58), Expect = 2e-22
 Identities = 142/170 (83%)
 Strand = Plus / Plus

                                                                       
Query: 119 gccggcgctggactggccggcctcgccgtcgctctgggactccacaggaagggcgttcgg 178
           |||||||| || || ||||| ||||| || || || ||||| |||||||| ||  |  ||
Sbjct: 113 gccggcgccggcctcgccgggctcgcagtggccctcggactgcacaggaaaggactgagg 172

                                                                       
Query: 179 agcgtggtgctggagtcgtcgccggaccgtcgcacgtccggcttcgccttcttcacatgg 238
           ||||||||||||||||||||||||   |  || |||||||| || || ||| ||||||||
Sbjct: 173 agcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacatgg 232

                                                             
Query: 239 accaacgccttccgcgcgcttgacgccctcggggtaggggacaagatgag 288
           || |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 233 acgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagatgag 282



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 454 caccatccgctactcctccaagatcgtctccatcga 489
           |||||||||||||||||||||||||||||| |||||
Sbjct: 448 caccatccgctactcctccaagatcgtctcgatcga 483



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 515 gccaagatcctccatctcgccgacggctcgactctccgggcaaaggtgctgaccggctgc 574
           |||||||||||||||||  | ||||| ||||||||| | ||||||||||||| ||| |||
Sbjct: 497 gccaagatcctccatctgtctgacggatcgactctcagagcaaaggtgctgatcgggtgc 556

             
Query: 575 ga 576
           ||
Sbjct: 557 ga 558
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                           
Query: 177     ggagcgtggtgctggagtcgtcgccggaccgtcgcacgtccggcttcgccttcttcacat 236
               ||||||||||||||||||||||||||   |  || |||||||| || || ||| ||||||
Sbjct: 2943674 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943733

                                                                   
Query: 237     ggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagatgag 288
               |||| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 2943734 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagatgag 2943785



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                   
Query: 454     caccatccgctactcctccaagatcgtctccatcga 489
               |||||||||||||||||||||||||||||| |||||
Sbjct: 2944719 caccatccgctactcctccaagatcgtctcgatcga 2944754



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 233     acatggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagat 285
               |||||||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 2946754 acatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaagat 2946806



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                          
Query: 454     caccatccgctactcctccaagatcgt 480
               |||||||||||||||||||||||||||
Sbjct: 2933223 caccatccgctactcctccaagatcgt 2933249



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 254     gcgcttgacgccctcggggtaggggacaagat 285
               |||||||||||||| |||||||| ||||||||
Sbjct: 2931586 gcgcttgacgcccttggggtaggcgacaagat 2931617



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 515     gccaagatcctccatctcgccgacggctcgactctccgggcaaaggt 561
               |||||||||||||||||  | ||||| ||||||||| | ||||||||
Sbjct: 2944768 gccaagatcctccatctgtctgacggatcgactctcagagcaaaggt 2944814



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 454     caccatccgctactcctccaagatcgt 480
               ||||||||| |||||||||||||||||
Sbjct: 2940919 caccatccgttactcctccaagatcgt 2940945



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 417      tgctgctccaggcgctggagga 438
                ||||||||||||||||||||||
Sbjct: 32478425 tgctgctccaggcgctggagga 32478404



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 184     ggtgctggagtcgtcgccgga 204
               |||||||||||||||||||||
Sbjct: 2940419 ggtgctggagtcgtcgccgga 2940439



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 184     ggtgctggagtcgtcgccgga 204
               |||||||||||||||||||||
Sbjct: 2916789 ggtgctggagtcgtcgccgga 2916809



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 254     gcgcttgacgccctcggggtaggggacaagat 285
               |||||||||||||| ||||| || ||||||||
Sbjct: 2916859 gcgcttgacgcccttggggtgggtgacaagat 2916890
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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0016I15, complete sequence
          Length = 166282

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                         
Query: 177   ggagcgtggtgctggagtcgtcgccggaccgtcgcacgtccggcttcgccttcttcacat 236
             ||||||||||||||||||||||||||   |  || |||||||| || || ||| ||||||
Sbjct: 81161 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 81220

                                                                 
Query: 237   ggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagatgag 288
             |||| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 81221 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagatgag 81272



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                 
Query: 454   caccatccgctactcctccaagatcgtctccatcga 489
             |||||||||||||||||||||||||||||| |||||
Sbjct: 82206 caccatccgctactcctccaagatcgtctcgatcga 82241



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 233   acatggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagat 285
             |||||||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 84241 acatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaagat 84293



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 454   caccatccgctactcctccaagatcgt 480
             |||||||||||||||||||||||||||
Sbjct: 70710 caccatccgctactcctccaagatcgt 70736



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 254   gcgcttgacgccctcggggtaggggacaagat 285
             |||||||||||||| |||||||| ||||||||
Sbjct: 69073 gcgcttgacgcccttggggtaggcgacaagat 69104



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 515   gccaagatcctccatctcgccgacggctcgactctccgggcaaaggt 561
             |||||||||||||||||  | ||||| ||||||||| | ||||||||
Sbjct: 82255 gccaagatcctccatctgtctgacggatcgactctcagagcaaaggt 82301



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 454   caccatccgctactcctccaagatcgt 480
             ||||||||| |||||||||||||||||
Sbjct: 78406 caccatccgttactcctccaagatcgt 78432



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   ggtgctggagtcgtcgccgga 204
             |||||||||||||||||||||
Sbjct: 77906 ggtgctggagtcgtcgccgga 77926



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   ggtgctggagtcgtcgccgga 204
             |||||||||||||||||||||
Sbjct: 54276 ggtgctggagtcgtcgccgga 54296



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 254   gcgcttgacgccctcggggtaggggacaagat 285
             |||||||||||||| ||||| || ||||||||
Sbjct: 54346 gcgcttgacgcccttggggtgggtgacaagat 54377
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                           
Query: 177     ggagcgtggtgctggagtcgtcgccggaccgtcgcacgtccggcttcgccttcttcacat 236
               ||||||||||||||||||||||||||   |  || |||||||| || || ||| ||||||
Sbjct: 2943785 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943844

                                                                   
Query: 237     ggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagatgag 288
               |||| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 2943845 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagatgag 2943896



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                   
Query: 454     caccatccgctactcctccaagatcgtctccatcga 489
               |||||||||||||||||||||||||||||| |||||
Sbjct: 2944830 caccatccgctactcctccaagatcgtctcgatcga 2944865



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 233     acatggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagat 285
               |||||||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 2946865 acatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaagat 2946917



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                          
Query: 454     caccatccgctactcctccaagatcgt 480
               |||||||||||||||||||||||||||
Sbjct: 2933334 caccatccgctactcctccaagatcgt 2933360



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 254     gcgcttgacgccctcggggtaggggacaagat 285
               |||||||||||||| |||||||| ||||||||
Sbjct: 2931697 gcgcttgacgcccttggggtaggcgacaagat 2931728



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 515     gccaagatcctccatctcgccgacggctcgactctccgggcaaaggt 561
               |||||||||||||||||  | ||||| ||||||||| | ||||||||
Sbjct: 2944879 gccaagatcctccatctgtctgacggatcgactctcagagcaaaggt 2944925



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 454     caccatccgctactcctccaagatcgt 480
               ||||||||| |||||||||||||||||
Sbjct: 2941030 caccatccgttactcctccaagatcgt 2941056



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 417      tgctgctccaggcgctggagga 438
                ||||||||||||||||||||||
Sbjct: 32568935 tgctgctccaggcgctggagga 32568914



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 184     ggtgctggagtcgtcgccgga 204
               |||||||||||||||||||||
Sbjct: 2940530 ggtgctggagtcgtcgccgga 2940550



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 184     ggtgctggagtcgtcgccgga 204
               |||||||||||||||||||||
Sbjct: 2916900 ggtgctggagtcgtcgccgga 2916920



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 254     gcgcttgacgccctcggggtaggggacaagat 285
               |||||||||||||| ||||| || ||||||||
Sbjct: 2916970 gcgcttgacgcccttggggtgggtgacaagat 2917001
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>dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A09, full
           insert sequence
          Length = 1661

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 233 acatggaccaacgccttccgcgcgcttgacgccctcggggtaggggacaagat 285
           |||||||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 250 acatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaagat 302
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>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
             complete sequence
          Length = 96079

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                         
Query: 426   aggcgctggaggatgagctgccgccggacaccatccgctactcctccaagatcgtctcca 485
             ||||| ||| ||| ||||||||||||| ||||||||| | ||| |||| | ||| |||||
Sbjct: 36838 aggcgatggcggaggagctgccgccgggcaccatccggttctcgtccaggctcgcctcca 36897

                
Query: 486   tcg 488
             |||
Sbjct: 36898 tcg 36900
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                            
Query: 426      aggcgctggaggatgagctgccgccggacaccatccgctactcctccaagatcgtctcca 485
                ||||| ||| ||| ||||||||||||| ||||||||| | ||| |||| | ||| |||||
Sbjct: 20933615 aggcgatggcggaggagctgccgccgggcaccatccggttctcgtccaggctcgcctcca 20933674

                   
Query: 486      tcg 488
                |||
Sbjct: 20933675 tcg 20933677
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>dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B02, full
           insert sequence
          Length = 1590

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 454 caccatccgctactcctccaagatcgt 480
           ||||||||| |||||||||||||||||
Sbjct: 609 caccatccgttactcctccaagatcgt 635
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>ref|NM_188604.1| Oryza sativa (japonica cultivar-group), Ozsa8207 predicted mRNA
          Length = 2448

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 487 cgacgaccaggacggcgacggcgacg 512
           |||||||||||||||||||| |||||
Sbjct: 750 cgacgaccaggacggcgacgtcgacg 775
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>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete
              sequence
          Length = 145507

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 417    tgctgctccaggcgctggagga 438
              ||||||||||||||||||||||
Sbjct: 130553 tgctgctccaggcgctggagga 130532
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 487     cgacgaccaggacggcgacggcgacg 512
               |||||||||||||||||||| |||||
Sbjct: 7182214 cgacgaccaggacggcgacgtcgacg 7182189



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 497      gacggcgacggcgacggtgc 516
                ||||||||||||||||||||
Sbjct: 21825470 gacggcgacggcgacggtgc 21825451
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>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485D09
          Length = 150594

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 487   cgacgaccaggacggcgacggcgacg 512
             |||||||||||||||||||| |||||
Sbjct: 76862 cgacgaccaggacggcgacgtcgacg 76837
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>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete
             sequence
          Length = 119134

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 417   tgctgctccaggcgctggagga 438
             ||||||||||||||||||||||
Sbjct: 11874 tgctgctccaggcgctggagga 11853
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>dbj|AK073842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067C09, full
           insert sequence
          Length = 1820

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 417 tgctgctccaggcgctggagga 438
           ||||||||||||||||||||||
Sbjct: 354 tgctgctccaggcgctggagga 375
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>gb|AY785901.1| Triticum aestivum cultivar Chinese Spring TaCBF14 (CBF14) mRNA,
           complete cds
          Length = 1049

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 493 ccaggacggcgacggcgacgg 513
           |||||||||||||||||||||
Sbjct: 474 ccaggacggcgacggcgacgg 454
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 411     gtaacgtgctgctccaggcgctgga 435
               |||||||||||||||||||| ||||
Sbjct: 3309640 gtaacgtgctgctccaggcggtgga 3309616
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>gb|DQ151545.1| Hordeum vulgare subsp. vulgare cultivar Morex CBF14 (CBF14) gene,
           complete cds
          Length = 1053

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 493 ccaggacggcgacggcgacgg 513
           |||||||||||||||||||||
Sbjct: 455 ccaggacggcgacggcgacgg 435
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>gb|DQ095159.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF14 (CBF14)
           gene, complete cds
          Length = 1053

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 493 ccaggacggcgacggcgacgg 513
           |||||||||||||||||||||
Sbjct: 455 ccaggacggcgacggcgacgg 435
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>gb|AY951948.1| Triticum monococcum CRT/DRE binding factor 14 (CBF14) gene, complete
            cds
          Length = 5244

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 493  ccaggacggcgacggcgacgg 513
            |||||||||||||||||||||
Sbjct: 1000 ccaggacggcgacggcgacgg 980
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 496     ggacggcgacggcgacggtgc 516
               |||||||||||||||||||||
Sbjct: 1575946 ggacggcgacggcgacggtgc 1575966
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 497     gacggcgacggcgacggtgcc 517
               |||||||||||||||||||||
Sbjct: 6187633 gacggcgacggcgacggtgcc 6187613



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 490     cgaccaggacggcgacggcg 509
               ||||||||||||||||||||
Sbjct: 1187561 cgaccaggacggcgacggcg 1187542
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>ref|XM_580001.1| PREDICTED: Rattus norvegicus LOC499665 (LOC499665), mRNA
          Length = 526

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 153 tgggactccacaggaagggcg 173
           |||||||||||||||||||||
Sbjct: 479 tgggactccacaggaagggcg 459
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>gb|AF530054.1| Azospirillum brasilense Yu62 clpP-tig gene cluster
          Length = 6369

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 418  gctgctccaggcgctggagga 438
            |||||||||||||||||||||
Sbjct: 3242 gctgctccaggcgctggagga 3222
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>gb|AY572831.1| Triticum aestivum C repeat-binding factor 2 mRNA, complete cds
          Length = 645

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 493 ccaggacggcgacggcgacgg 513
           |||||||||||||||||||||
Sbjct: 376 ccaggacggcgacggcgacgg 356
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>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1006_A02
          Length = 175153

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 497    gacggcgacggcgacggtgcc 517
              |||||||||||||||||||||
Sbjct: 153115 gacggcgacggcgacggtgcc 153095
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>dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0018I03
          Length = 145818

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 496    ggacggcgacggcgacggtgc 516
              |||||||||||||||||||||
Sbjct: 104190 ggacggcgacggcgacggtgc 104210
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>dbj|AK100562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104G23, full
           insert sequence
          Length = 3279

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 497 gacggcgacggcgacggtgcc 517
           |||||||||||||||||||||
Sbjct: 51  gacggcgacggcgacggtgcc 71
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>ref|XM_463927.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 444

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 490 cgaccaggacggcgacggcg 509
           ||||||||||||||||||||
Sbjct: 291 cgaccaggacggcgacggcg 310
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>ref|XM_463319.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1122

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 497 gacggcgacggcgacggtgc 516
           ||||||||||||||||||||
Sbjct: 932 gacggcgacggcgacggtgc 951
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>gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, complete sequence
          Length = 198404

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   atctgcagctgctggggttg 316
             ||||||||||||||||||||
Sbjct: 39075 atctgcagctgctggggttg 39094
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 497     gacggcgacggcgacggtgc 516
               ||||||||||||||||||||
Sbjct: 1380261 gacggcgacggcgacggtgc 1380280
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>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
              complete sequence
          Length = 119500

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 494    caggacggcgacggcgacgg 513
              ||||||||||||||||||||
Sbjct: 111275 caggacggcgacggcgacgg 111256
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 497     gacggcgacggcgacggtgc 516
               ||||||||||||||||||||
Sbjct: 2605049 gacggcgacggcgacggtgc 2605068
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>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10,
            complete sequence
          Length = 127304

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 494  caggacggcgacggcgacgg 513
            ||||||||||||||||||||
Sbjct: 4044 caggacggcgacggcgacgg 4025
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>gb|AC110574.9| Mus musculus chromosome 3, clone RP23-324B15, complete sequence
          Length = 196451

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    atctgcagctgctggggttg 316
              ||||||||||||||||||||
Sbjct: 179553 atctgcagctgctggggttg 179572
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     gacggcgacggcgacggtgc 516
               ||||||||||||||||||||
Sbjct: 1777103 gacggcgacggcgacggtgc 1777084
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 490   cgaccaggacggcgacggcgacggtgcc 517
             ||||| ||||||||||||||||| ||||
Sbjct: 31961 cgacctggacggcgacggcgacgctgcc 31934
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 417     tgctgctccaggcgctggaggatg 440
               |||||||||||||||||| |||||
Sbjct: 1047439 tgctgctccaggcgctggcggatg 1047416
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 494    caggacggcgacggcgacggtgcc 517
              ||||| ||||||||||||||||||
Sbjct: 504668 caggatggcgacggcgacggtgcc 504691
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>gb|AY082962.1| Hordeum vulgare clone HVSMEb0009D03f CONSTANS-like protein CO6 (CO6)
            mRNA, complete cds
          Length = 1324

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 490  cgaccaggacggcgacggcgacgg 513
            ||||||||||| ||||||||||||
Sbjct: 1045 cgaccaggacgccgacggcgacgg 1068
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>gb|AY082961.1| Hordeum vulgare clone HVSMEc0008O24f CONSTANS-like protein CO6 (CO6)
            mRNA, complete cds
          Length = 1455

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 490  cgaccaggacggcgacggcgacgg 513
            ||||||||||| ||||||||||||
Sbjct: 1092 cgaccaggacgccgacggcgacgg 1115
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>gb|AY082960.1| Hordeum vulgare CONSTANS-like protein CO6 (CO6) gene, partial cds
          Length = 1163

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 490  cgaccaggacggcgacggcgacgg 513
            ||||||||||| ||||||||||||
Sbjct: 1051 cgaccaggacgccgacggcgacgg 1074
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>emb|AL112915.1|CNS01AGR Botrytis cinerea strain T4 cDNA library
          Length = 515

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 486 tcgacgaccaggacggcgacggcgacgg 513
           ||||||||  ||||||||||||||||||
Sbjct: 224 tcgacgactgggacggcgacggcgacgg 251
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 497      gacggcgacggcgacggtgc 516
                ||||||||||||||||||||
Sbjct: 18886383 gacggcgacggcgacggtgc 18886402
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 494      caggacggcgacggcgacgg 513
                ||||||||||||||||||||
Sbjct: 28476351 caggacggcgacggcgacgg 28476332
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>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1114B07
          Length = 148060

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 497   gacggcgacggcgacggtgc 516
             ||||||||||||||||||||
Sbjct: 54763 gacggcgacggcgacggtgc 54744
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>dbj|AP004137.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1297_D02
          Length = 104470

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 497   gacggcgacggcgacggtgc 516
             ||||||||||||||||||||
Sbjct: 53136 gacggcgacggcgacggtgc 53155
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 525     tccatctcgccgacggctcg 544
               ||||||||||||||||||||
Sbjct: 7894366 tccatctcgccgacggctcg 7894385
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    tccaggcgctggaggatgag 442
              ||||||||||||||||||||
Sbjct: 374745 tccaggcgctggaggatgag 374726
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>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0575F10
          Length = 150462

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   cgaccaggacggcgacggcg 509
             ||||||||||||||||||||
Sbjct: 18652 cgaccaggacggcgacggcg 18633
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>emb|CT573086.9| Mouse DNA sequence from clone RP23-163K5 on chromosome 16, complete
              sequence
          Length = 208384

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    gtcgctctgggactccacag 165
              ||||||||||||||||||||
Sbjct: 162423 gtcgctctgggactccacag 162442
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 418    gctgctccaggcgctggaggatgagctg 445
              ||||| ||||||||||| ||||||||||
Sbjct: 184360 gctgcgccaggcgctggcggatgagctg 184333
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>dbj|AP003155.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-567F3, complete
             sequences
          Length = 157385

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   gtcgctctgggactccacag 165
             ||||||||||||||||||||
Sbjct: 89189 gtcgctctgggactccacag 89170
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>gb|AC154234.1| Mus musculus BAC clone RP24-345H5 from 16, complete sequence
          Length = 161505

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    gacatctgcagctgctgggg 313
              ||||||||||||||||||||
Sbjct: 105634 gacatctgcagctgctgggg 105615
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>emb|AL805960.10| Mouse DNA sequence from clone RP23-20P17 on chromosome X, complete
             sequence
          Length = 172780

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 149   gctctgggactccacaggaagggcgttc 176
             |||||||||||||| |||||||| ||||
Sbjct: 25897 gctctgggactccagaggaagggggttc 25924
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>dbj|AP006092.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT21D16, TM0157b,
            complete sequence
          Length = 28160

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 497  gacggcgacggcgacggtgc 516
            ||||||||||||||||||||
Sbjct: 1738 gacggcgacggcgacggtgc 1757
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>dbj|AP004511.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT17H19, TM0041,
             complete sequence
          Length = 108987

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 497   gacggcgacggcgacggtgc 516
             ||||||||||||||||||||
Sbjct: 82069 gacggcgacggcgacggtgc 82050


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,646,961
Number of Sequences: 3902068
Number of extensions: 3646961
Number of successful extensions: 90933
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88904
Number of HSP's gapped (non-prelim): 2025
length of query: 576
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 553
effective length of database: 17,143,297,704
effective search space: 9480243630312
effective search space used: 9480243630312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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