ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart23f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPO... 31 0.73
2DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular car... 31 0.95
3DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-ex... 28 8.0

>AFR_ARATH (Q8LAW2) Protein AFR (Protein ATTENUATED FAR-RED RESPONSE)|
          Length = 372

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 16/65 (24%), Positives = 24/65 (36%)
 Frame = +1

Query: 64  LIPGMPDDVAVDCLARVPHGSYRSMRRVCRGWRSXXXXXXXXXXXXXXXXXXDLVFLMHF 243
           LI G+P+D+A  CL R+P+  +   R V   W                      +F+  F
Sbjct: 28  LISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFAF 87

Query: 244 GNPVA 258
               A
Sbjct: 88  NKSTA 92



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>DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular carcinoma novel|
           gene 3 protein)
          Length = 836

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 125 DPCGTRARQSTATSSGIPGMRSTWSASHP 39
           D CG     +  T S +P   S WSASHP
Sbjct: 304 DICGGSELDAVKTDSSLPSPSSLWSASHP 332



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>DACT1_MOUSE (Q8R4A3) Dapper homolog 1 (MDpr1) (Frodo) (Thymus-expressed novel|
           gene 3 protein)
          Length = 778

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 125 DPCGTRARQSTATSSGIPGMRSTWSASHP 39
           D C      +T T + +P   S WSASHP
Sbjct: 260 DICIGSELNATKTDNSLPSPSSLWSASHP 288


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,019,613
Number of Sequences: 219361
Number of extensions: 266771
Number of successful extensions: 1008
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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