>DCK1_FOWPV (P21974) Probable deoxycytidine kinase FPV059 (EC 2.7.1.74) (dCK)|
          Length = 219

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 346 FLFVADVAELARMADPRYAVLCVHHD-YTPKEATKMDGAV 462
           ++F      L  M DP +A+ C  HD YT K   + DG +
Sbjct: 100 YVFAEAATALGYMDDPEWALYCKQHDWYTDKLEIQFDGII 139

>SHP_RAT (P97947) Nuclear receptor 0B2 (Orphan nuclear receptor SHP) (Small|
           heterodimer partner)
          Length = 260

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 272 SVLSVGPRSRQYSPASRSSC 213
           ++LS GPR+R  +PASRS C
Sbjct: 23  TLLSPGPRTRPMAPASRSHC 42

>KHSE_LISMO (Q8Y4A6) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 296
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152

>KHSE_LISMF (Q71WN3) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 296
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152

>KHSE_LISIN (Q927U8) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 288

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 195 GHPDRPAGAPRGRAVLAGARADGEHGVLLHPLPD 296
           GHPD  A A  G  V+ GA+ DGE   + H  PD
Sbjct: 120 GHPDNVAPAVLGNWVV-GAKLDGEDFYVRHLFPD 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,394,533
Number of Sequences: 219361
Number of extensions: 868852
Number of successful extensions: 3196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3186
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)