ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart22b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYV_CLOAB (Q97GG8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 32 1.5
2ALO_YEAST (P54783) D-arabinono-1,4-lactone oxidase (EC 1.1.3.37)... 30 5.9
3SYV_CLOTE (Q891R5) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 29 10.0

>SYV_CLOAB (Q97GG8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 881

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 15/43 (34%), Positives = 30/43 (69%)
 Frame = +3

Query: 177 KELDQLRKEQDDVASEINKIHKKIISSPEMVDKSVDAMMAGLR 305
           KE+++L KE+D + +EI ++ KK +S+   VDK+ ++++   R
Sbjct: 819 KEIERLSKEKDKLKAEIQRVDKK-LSNKGFVDKAPESVVEAER 860



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>ALO_YEAST (P54783) D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) (ALO)|
           (L-galactono-gamma-lactone oxidase)
          Length = 526

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 107 RGRHTRLGSDGRAQSTWGLTLGAFFY 30
           RG  T    +G A+S WG  LG FFY
Sbjct: 237 RGNKTTDAQNGPAKSWWGTKLGRFFY 262



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>SYV_CLOTE (Q891R5) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 880

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 13/39 (33%), Positives = 27/39 (69%)
 Frame = +3

Query: 177 KELDQLRKEQDDVASEINKIHKKIISSPEMVDKSVDAMM 293
           KE+++L KE++ +  EI ++ KK +S+   V K+ +A++
Sbjct: 818 KEMERLNKEREKLEKEIERVDKK-LSNENFVKKAPEAVV 855


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,757,568
Number of Sequences: 219361
Number of extensions: 965674
Number of successful extensions: 2647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2647
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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