ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart22b05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB189166.1| Oryza sativa (japonica cultivar-group) OsGDH2 mRNA for glutamate dehydrogenase 2, complete cds Length = 1835 Score = 266 bits (134), Expect = 3e-68 Identities = 206/230 (89%) Strand = Plus / Plus Query: 32 gccatgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcggc 91 |||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| Sbjct: 245 gccatgaacgcgctcgccgccaccagccgtaacttccggcaggccgccaggctgctcggc 304 Query: 92 ctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgc 151 ||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||||| Sbjct: 305 ctcgactccaagctcgagaagagcctcctgatcccgttccgcgagatcaaggtggaatgc 364 Query: 152 accatccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcagcatgac 211 ||||||||||| ||||| || || |||| |||||| | || |||||||||||||| ||| Sbjct: 365 accatccccaaagacgatggaaccttggcgtccttcattgggttccgcgtgcagcacgac 424 Query: 212 aatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggttga 261 |||||||||| ||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 425 aatgcccgcgggccaatgaaaggtggcattcgctatcaccctgaggttga 474
>dbj|AK063467.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-H11, full insert sequence Length = 1884 Score = 266 bits (134), Expect = 3e-68 Identities = 206/230 (89%) Strand = Plus / Plus Query: 32 gccatgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcggc 91 |||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| Sbjct: 336 gccatgaacgcgctcgccgccaccagccgtaacttccggcaggccgccaggctgctcggc 395 Query: 92 ctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgc 151 ||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||||| Sbjct: 396 ctcgactccaagctcgagaagagcctcctgatcccgttccgcgagatcaaggtggaatgc 455 Query: 152 accatccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcagcatgac 211 ||||||||||| ||||| || || |||| |||||| | || |||||||||||||| ||| Sbjct: 456 accatccccaaagacgatggaaccttggcgtccttcattgggttccgcgtgcagcacgac 515 Query: 212 aatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggttga 261 |||||||||| ||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 516 aatgcccgcgggccaatgaaaggtggcattcgctatcaccctgaggttga 565
>ref|XM_473381.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1239 Score = 260 bits (131), Expect = 2e-66 Identities = 203/227 (89%) Strand = Plus / Plus Query: 35 atgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcggcctc 94 ||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| Sbjct: 1 atgaacgcgctcgccgccaccagccgtaacttccggcaggccgccaggctgctcggcctc 60 Query: 95 gactccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgcacc 154 |||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||||| Sbjct: 61 gactccaagctcgagaagagcctcctgatcccgttccgcgagatcaaggtggaatgcacc 120 Query: 155 atccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcagcatgacaat 214 |||||||| ||||| || || |||| |||||| | || |||||||||||||| |||||| Sbjct: 121 atccccaaagacgatggaaccttggcgtccttcattgggttccgcgtgcagcacgacaat 180 Query: 215 gcccgcgagcccatgaaaggtggcatccgctaccaccccgaggttga 261 ||||||| ||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 181 gcccgcgggccaatgaaaggtggcattcgctatcaccctgaggttga 227
>dbj|AK065301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N22, full insert sequence Length = 2947 Score = 260 bits (131), Expect = 2e-66 Identities = 203/227 (89%) Strand = Plus / Plus Query: 32 gccatgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcggc 91 |||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| Sbjct: 550 gccatgaacgcgctcgccgccaccagccgtaacttccggcaggccgccaggctgctcggc 609 Query: 92 ctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgc 151 ||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||||| Sbjct: 610 ctcgactccaagctcgagaagagcctcctgatcccgttccgcgagatcaaggtggaatgc 669 Query: 152 accatccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcagcatgac 211 ||||||||||| ||||| || || |||| |||||| | || |||||||||||||| ||| Sbjct: 670 accatccccaaagacgatggaaccttggcgtccttcattgggttccgcgtgcagcacgac 729 Query: 212 aatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggt 258 |||||||||| ||| |||||||||||||| ||||| ||||| ||||| Sbjct: 730 aatgcccgcgggccaatgaaaggtggcattcgctatcaccctgaggt 776
>ref|XM_467072.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1424 Score = 170 bits (86), Expect = 1e-39 Identities = 194/230 (84%) Strand = Plus / Plus Query: 32 gccatgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcggc 91 |||||||||||||| ||||| ||||||||||||||||| ||||| ||| |||| |||||| Sbjct: 114 gccatgaacgcgctagccgccaccagccgcaacttccggcaggcggcgaggctactcggc 173 Query: 92 ctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgc 151 ||||||||||| ||| |||||||||| || ||||| ||||||||||||||| |||||| Sbjct: 174 ctcgactccaaactccagaagagccttctgatccctctccgcgagatcaaggttgaatgc 233 Query: 152 accatccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcagcatgac 211 ||||||||||| ||||| ||||| |||| | || || || ||| | |||||||||||| Sbjct: 234 accatccccaaagacgatggcaccttggcgacgtttgttgggttcagagtgcagcatgac 293 Query: 212 aatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggttga 261 ||| |||| | || |||||||| |||||| | || ||||| |||||||| Sbjct: 294 aattcccgtggcccgatgaaaggcggcatcaggtatcaccctgaggttga 343
>dbj|AB035927.1| Oryza sativa (japonica cultivar-group) GDH3 mRNA for glutamate dehydrogenase 3, complete cds Length = 1452 Score = 170 bits (86), Expect = 1e-39 Identities = 194/230 (84%) Strand = Plus / Plus Query: 32 gccatgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcggc 91 |||||||||||||| ||||| ||||||||||||||||| ||||| ||| |||| |||||| Sbjct: 140 gccatgaacgcgctagccgccaccagccgcaacttccggcaggcggcgaggctactcggc 199 Query: 92 ctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgc 151 ||||||||||| ||| |||||||||| || ||||| ||||||||||||||| |||||| Sbjct: 200 ctcgactccaaactccagaagagccttctgatccctctccgcgagatcaaggttgaatgc 259 Query: 152 accatccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcagcatgac 211 ||||||||||| ||||| ||||| |||| | || || || ||| | |||||||||||| Sbjct: 260 accatccccaaagacgatggcaccttggcgacgtttgttgggttcagagtgcagcatgac 319 Query: 212 aatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggttga 261 ||| |||| | || |||||||| |||||| | || ||||| |||||||| Sbjct: 320 aattcccgtggcccgatgaaaggcggcatcaggtatcaccctgaggttga 369
>dbj|AK103028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C02, full insert sequence Length = 1424 Score = 170 bits (86), Expect = 1e-39 Identities = 194/230 (84%) Strand = Plus / Plus Query: 32 gccatgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcggc 91 |||||||||||||| ||||| ||||||||||||||||| ||||| ||| |||| |||||| Sbjct: 114 gccatgaacgcgctagccgccaccagccgcaacttccggcaggcggcgaggctactcggc 173 Query: 92 ctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgc 151 ||||||||||| ||| |||||||||| || ||||| ||||||||||||||| |||||| Sbjct: 174 ctcgactccaaactccagaagagccttctgatccctctccgcgagatcaaggttgaatgc 233 Query: 152 accatccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcagcatgac 211 ||||||||||| ||||| ||||| |||| | || || || ||| | |||||||||||| Sbjct: 234 accatccccaaagacgatggcaccttggcgacgtttgttgggttcagagtgcagcatgac 293 Query: 212 aatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggttga 261 ||| |||| | || |||||||| |||||| | || ||||| |||||||| Sbjct: 294 aattcccgtggcccgatgaaaggcggcatcaggtatcaccctgaggttga 343
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 159 bits (80), Expect = 5e-36 Identities = 104/112 (92%) Strand = Plus / Plus Query: 32 gccatgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcggc 91 |||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| Sbjct: 27207337 gccatgaacgcgctcgccgccaccagccgtaacttccggcaggccgccaggctgctcggc 27207396 Query: 92 ctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaagg 143 ||||||||||||||| ||||||||||||| ||||| |||||||||||||||| Sbjct: 27207397 ctcgactccaagctcgagaagagcctcctgatcccgttccgcgagatcaagg 27207448 Score = 107 bits (54), Expect = 2e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 145 ggaatgcaccatccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgca 204 |||||||||||||||||| ||||| || || |||| |||||| | || ||||||||||| Sbjct: 27207557 ggaatgcaccatccccaaagacgatggaaccttggcgtccttcattgggttccgcgtgca 27207616 Query: 205 gcatgacaatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggt 258 ||| ||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| Sbjct: 27207617 gcacgacaatgcccgcgggccaatgaaaggtggcattcgctatcaccctgaggt 27207670
>emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03, complete sequence Length = 136656 Score = 159 bits (80), Expect = 5e-36 Identities = 104/112 (92%) Strand = Plus / Plus Query: 32 gccatgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcggc 91 |||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| Sbjct: 38427 gccatgaacgcgctcgccgccaccagccgtaacttccggcaggccgccaggctgctcggc 38486 Query: 92 ctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaagg 143 ||||||||||||||| ||||||||||||| ||||| |||||||||||||||| Sbjct: 38487 ctcgactccaagctcgagaagagcctcctgatcccgttccgcgagatcaagg 38538 Score = 107 bits (54), Expect = 2e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 145 ggaatgcaccatccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgca 204 |||||||||||||||||| ||||| || || |||| |||||| | || ||||||||||| Sbjct: 38647 ggaatgcaccatccccaaagacgatggaaccttggcgtccttcattgggttccgcgtgca 38706 Query: 205 gcatgacaatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggt 258 ||| ||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| Sbjct: 38707 gcacgacaatgcccgcgggccaatgaaaggtggcattcgctatcaccctgaggt 38760
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 127 bits (64), Expect = 2e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 32 gccatgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcggc 91 |||||||||||||| ||||| ||||||||||||||||| ||||| ||| |||| |||||| Sbjct: 26258838 gccatgaacgcgctagccgccaccagccgcaacttccggcaggcggcgaggctactcggc 26258897 Query: 92 ctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaagg 143 ||||||||||| ||| |||||||||| || ||||| ||||||||||||||| Sbjct: 26258898 ctcgactccaaactccagaagagccttctgatccctctccgcgagatcaagg 26258949 Score = 50.1 bits (25), Expect = 0.004 Identities = 91/113 (80%) Strand = Plus / Plus Query: 146 gaatgcaccatccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcag 205 ||||||||||||||||| ||||| ||||| |||| | || || || ||| | |||||| Sbjct: 26259102 gaatgcaccatccccaaagacgatggcaccttggcgacgtttgttgggttcagagtgcag 26259161 Query: 206 catgacaatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggt 258 ||||||||| |||| | || |||||||| |||||| | || ||||| ||||| Sbjct: 26259162 catgacaattcccgtggcccgatgaaaggcggcatcaggtatcaccctgaggt 26259214
>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0012J10 Length = 132375 Score = 127 bits (64), Expect = 2e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 32 gccatgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcggc 91 |||||||||||||| ||||| ||||||||||||||||| ||||| ||| |||| |||||| Sbjct: 81679 gccatgaacgcgctagccgccaccagccgcaacttccggcaggcggcgaggctactcggc 81738 Query: 92 ctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaagg 143 ||||||||||| ||| |||||||||| || ||||| ||||||||||||||| Sbjct: 81739 ctcgactccaaactccagaagagccttctgatccctctccgcgagatcaagg 81790 Score = 50.1 bits (25), Expect = 0.004 Identities = 91/113 (80%) Strand = Plus / Plus Query: 146 gaatgcaccatccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcag 205 ||||||||||||||||| ||||| ||||| |||| | || || || ||| | |||||| Sbjct: 81943 gaatgcaccatccccaaagacgatggcaccttggcgacgtttgttgggttcagagtgcag 82002 Query: 206 catgacaatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggt 258 ||||||||| |||| | || |||||||| |||||| | || ||||| ||||| Sbjct: 82003 catgacaattcccgtggcccgatgaaaggcggcatcaggtatcaccctgaggt 82055
>gb|AY350710.1| Brassica oleracea clone BAC Bo37N21, partial sequence Length = 78346 Score = 89.7 bits (45), Expect = 4e-15 Identities = 183/229 (79%) Strand = Plus / Plus Query: 31 agccatgaacgcgctcgccgcgaccagccgcaacttccgccaggccgcgcggctgctcgg 90 |||||||||||| || |||||||| | | | ||||||||||| || | ||| | ||||| Sbjct: 8271 agccatgaacgctctagccgcgacgaacaggaacttccgccacgcgtctcggatcctcgg 8330 Query: 91 cctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatg 150 | | || || ||| || ||| ||| ||| | ||||||||| | || ||||||| || || Sbjct: 8331 cttggattcgaagatcgagaggagtctcatgatccccttcagagaaatcaaggtcgagtg 8390 Query: 151 caccatccccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcagcatga 210 |||||||||||| ||||||||||| || | ||||||| | || ||| | || ||||| || Sbjct: 8391 caccatccccaaagacgacggcaccctcgtctccttcatcggattcagggttcagcacga 8450 Query: 211 caatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggtt 259 |||||| || | |||||||||||| |||||| | ||||| ||||||||| Sbjct: 8451 caatgctcgtgggcccatgaaaggaggcatcagataccatcccgaggtt 8499
>dbj|AB066298.1| Brassica napus gdh2 mRNA for glutamate dehydrogenase, complete cds Length = 1494 Score = 71.9 bits (36), Expect = 1e-09 Identities = 132/164 (80%) Strand = Plus / Plus Query: 98 tccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgcaccatc 157 |||||| || ||||||| ||| | ||||| ||| | || ||||||| ||| ||||| ||| Sbjct: 176 tccaagatcgagaagagtctcatgatcccattcagagaaatcaaggtggagtgcacgatc 235 Query: 158 cccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcagcatgacaatgcc 217 ||||| |||||||| ||||| | ||||| ||| || ||| | || || || |||||||| Sbjct: 236 cccaaagacgacggaacgcttgtctcctacgttggattcagggttcaacacgacaatgct 295 Query: 218 cgcgagcccatgaaaggtggcatccgctaccaccccgaggttga 261 || | ||||||||||| || ||| | ||||||||||||||||| Sbjct: 296 cgtggacccatgaaaggaggaatcagataccaccccgaggttga 339
>dbj|AB236412.1| Brassica napus gdh2 gene for glutamate dehydrogenase 2, complete cds Length = 3628 Score = 67.9 bits (34), Expect = 1e-08 Identities = 130/162 (80%) Strand = Plus / Plus Query: 98 tccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgcaccatc 157 |||||| || ||||||| ||| | ||||| ||| | || ||||||| ||| ||||| ||| Sbjct: 1755 tccaagatcgagaagagtctcatgatcccattcagagaaatcaaggtggagtgcacgatc 1814 Query: 158 cccaaggacgacggcacgctggcctccttcgtgggcttccgcgtgcagcatgacaatgcc 217 ||||| |||||||| ||||| | ||||| ||| || ||| | || || || |||||||| Sbjct: 1815 cccaaagacgacggaacgcttgtctcctacgttggattcagggttcaacacgacaatgct 1874 Query: 218 cgcgagcccatgaaaggtggcatccgctaccaccccgaggtt 259 || | ||||||||||| || ||| | ||||||||||||||| Sbjct: 1875 cgtggacccatgaaaggaggaatcagataccaccccgaggtt 1916
>gb|AY106054.1| Zea mays PCO074386 mRNA sequence Length = 1642 Score = 60.0 bits (30), Expect = 4e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 82 gctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaa 141 |||||| ||||||||||||||||| |||||||| | ||||| || ||| | |||||||| Sbjct: 183 gctgctgggcctcgactccaagctggagaagagcttgctcattccattcagggagatcaa 242 Query: 142 ggaggaatgcaccatccc 159 || |||||||| ||||| Sbjct: 243 ggttgaatgcacaatccc 260
>dbj|D49475.1|MZEGD Corn mRNA for glutamate dehydrogenase, complete cds Length = 1621 Score = 60.0 bits (30), Expect = 4e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 82 gctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaa 141 |||||| ||||||||||||||||| |||||||| | ||||| || ||| | |||||||| Sbjct: 168 gctgctgggcctcgactccaagctggagaagagcttgctcattccattcagggagatcaa 227 Query: 142 ggaggaatgcaccatccc 159 || |||||||| ||||| Sbjct: 228 ggttgaatgcacaatccc 245
>ref|XM_469970.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1615 Score = 56.0 bits (28), Expect = 6e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 82 gctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaa 141 |||||| ||||| ||||||||||| |||||||| | |||||||| ||| | |||||||| Sbjct: 118 gctgctgggcctggactccaagctggagaagagcttgctcatcccgttcagggagatcaa 177 Query: 142 ggaggaatgcac 153 || |||||||| Sbjct: 178 ggttgaatgcac 189
>ref|XM_507557.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0060J21.2 mRNA Length = 1684 Score = 56.0 bits (28), Expect = 6e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 82 gctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaa 141 |||||| ||||| ||||||||||| |||||||| | |||||||| ||| | |||||||| Sbjct: 187 gctgctgggcctggactccaagctggagaagagcttgctcatcccgttcagggagatcaa 246 Query: 142 ggaggaatgcac 153 || |||||||| Sbjct: 247 ggttgaatgcac 258
>ref|XM_507076.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0060J21.2 mRNA Length = 1617 Score = 56.0 bits (28), Expect = 6e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 82 gctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaa 141 |||||| ||||| ||||||||||| |||||||| | |||||||| ||| | |||||||| Sbjct: 120 gctgctgggcctggactccaagctggagaagagcttgctcatcccgttcagggagatcaa 179 Query: 142 ggaggaatgcac 153 || |||||||| Sbjct: 180 ggttgaatgcac 191
>gb|AY332470.1| Oryza sativa (japonica cultivar-group) glutamate dehydrogenase (GDH) mRNA, complete cds Length = 1416 Score = 56.0 bits (28), Expect = 6e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 82 gctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaa 141 |||||| ||||| ||||||||||| |||||||| | |||||||| ||| | |||||||| Sbjct: 118 gctgctgggcctggactccaagctggagaagagcttgctcatcccgttcagggagatcaa 177 Query: 142 ggaggaatgcac 153 || |||||||| Sbjct: 178 ggttgaatgcac 189
>dbj|AB024962.1| Oryza sativa (japonica cultivar-group) GDH1 mRNA for glutamate dehydrogenase 1, complete cds Length = 1550 Score = 56.0 bits (28), Expect = 6e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 82 gctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaa 141 |||||| ||||| ||||||||||| |||||||| | |||||||| ||| | |||||||| Sbjct: 61 gctgctgggcctggactccaagctggagaagagcttgctcatcccgttcagggagatcaa 120 Query: 142 ggaggaatgcac 153 || |||||||| Sbjct: 121 ggttgaatgcac 132
>dbj|AK071839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121E06, full insert sequence Length = 1682 Score = 56.0 bits (28), Expect = 6e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 82 gctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaa 141 |||||| ||||| ||||||||||| |||||||| | |||||||| ||| | |||||||| Sbjct: 189 gctgctgggcctggactccaagctggagaagagcttgctcatcccgttcagggagatcaa 248 Query: 142 ggaggaatgcac 153 || |||||||| Sbjct: 249 ggttgaatgcac 260
>gb|U93561.1|ZMU93561 Zea mays glutamate dehydrogenase (GDH1) mRNA, complete cds Length = 1236 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 89 ggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaa 148 ||||||||||||||||| |||||||| | ||||| || ||| | |||||||||| ||| Sbjct: 55 ggcctcgactccaagctggagaagagcttgctcattccattcagggagatcaaggttgaa 114 Query: 149 tgcaccatccc 159 ||||| ||||| Sbjct: 115 tgcacaatccc 125
>gb|U93560.1|ZMU93560 Zea mays glutamate dehydrogenase mutant (GDH1) mRNA, complete cds Length = 1236 Score = 54.0 bits (27), Expect = 2e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 89 ggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaaggaggaa 148 ||||||||||||||||| |||||||| | ||||| || ||| | |||||||||| ||| Sbjct: 55 ggcctcgactccaagctggagaagagcttgctcattccattcagggagatcaaggttgaa 114 Query: 149 tgcaccatccc 159 ||||| ||||| Sbjct: 115 tgcacaatccc 125
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 52.0 bits (26), Expect = 9e-04 Identities = 53/62 (85%) Strand = Plus / Plus Query: 82 gctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaa 141 |||||| ||||| ||||||||||| |||||||| | |||||||| ||| | |||||||| Sbjct: 6663 gctgctgggcctggactccaagctggagaagagcttgctcatcccgttcagggagatcaa 6722 Query: 142 gg 143 || Sbjct: 6723 gg 6724
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 52.0 bits (26), Expect = 9e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 82 gctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaa 141 |||||| ||||| ||||||||||| |||||||| | |||||||| ||| | |||||||| Sbjct: 32737244 gctgctgggcctggactccaagctggagaagagcttgctcatcccgttcagggagatcaa 32737185 Query: 142 gg 143 || Sbjct: 32737184 gg 32737183
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 52.0 bits (26), Expect = 9e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 82 gctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaa 141 |||||| ||||| ||||||||||| |||||||| | |||||||| ||| | |||||||| Sbjct: 32827754 gctgctgggcctggactccaagctggagaagagcttgctcatcccgttcagggagatcaa 32827695 Query: 142 gg 143 || Sbjct: 32827694 gg 32827693
>ref|NM_121822.2| Arabidopsis thaliana GDH1 (GLUTAMATE DEHYDROGENASE 1); oxidoreductase AT5G18170 (GDH1) mRNA, complete cds Length = 1565 Score = 48.1 bits (24), Expect = 0.014 Identities = 48/56 (85%) Strand = Plus / Plus Query: 101 aagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgcaccat 156 |||||| |||| || || |||||||||||||| || ||||||| |||||| ||||| Sbjct: 195 aagctcgagaaaagtcttctcatccccttccgagaaatcaaggtggaatgtaccat 250
>gb|AY693422.1| Brassica napus putative glutamate dehydrogenase 1 protein mRNA, partial cds Length = 487 Score = 48.1 bits (24), Expect = 0.014 Identities = 48/56 (85%) Strand = Plus / Plus Query: 101 aagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgcaccat 156 |||||| ||||||| || |||||||||||| | |||||||||| ||| || ||||| Sbjct: 21 aagctcgagaagagtcttctcatccccttcagagagatcaaggtggagtgtaccat 76
>gb|BT025561.1| Arabidopsis thaliana At5g18170 mRNA, complete cds Length = 1236 Score = 48.1 bits (24), Expect = 0.014 Identities = 48/56 (85%) Strand = Plus / Plus Query: 101 aagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgcaccat 156 |||||| |||| || || |||||||||||||| || ||||||| |||||| ||||| Sbjct: 67 aagctcgagaaaagtcttctcatccccttccgagaaatcaaggtggaatgtaccat 122
>gb|AY049243.1| Arabidopsis thaliana AT5g18170/MRG7_13 mRNA, complete cds Length = 1560 Score = 48.1 bits (24), Expect = 0.014 Identities = 48/56 (85%) Strand = Plus / Plus Query: 101 aagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgcaccat 156 |||||| |||| || || |||||||||||||| || ||||||| |||||| ||||| Sbjct: 196 aagctcgagaaaagtcttctcatccccttccgagaaatcaaggtggaatgtaccat 251
>gb|U53527.1|ATU53527 Arabidopsis thaliana glutamate dehydrogenase 1 (GDH1) mRNA, complete cds Length = 1514 Score = 48.1 bits (24), Expect = 0.014 Identities = 48/56 (85%) Strand = Plus / Plus Query: 101 aagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgcaccat 156 |||||| |||| || || |||||||||||||| || ||||||| |||||| ||||| Sbjct: 166 aagctcgagaaaagtcttctcatccccttccgagaaatcaaggtggaatgtaccat 221
>gb|U37771.1|ATU37771 Arabidopsis thaliana glutamate dehydrogenase 1 (GDH1) mRNA, complete cds Length = 1539 Score = 48.1 bits (24), Expect = 0.014 Identities = 48/56 (85%) Strand = Plus / Plus Query: 101 aagctctagaagagcctcctcatccccttccgcgagatcaaggaggaatgcaccat 156 |||||| |||| || || |||||||||||||| || ||||||| |||||| ||||| Sbjct: 168 aagctcgagaaaagtcttctcatccccttccgagaaatcaaggtggaatgtaccat 223
>dbj|AK101492.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042P14, full insert sequence Length = 3739 Score = 46.1 bits (23), Expect = 0.055 Identities = 59/71 (83%) Strand = Plus / Plus Query: 83 ctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaag 142 ||||| ||||| ||||||||||| |||||| | | |||||||| ||| | ||||||||| Sbjct: 3162 ctgctgggcctggactccaagctggagaagaacttgctcatcccattcagggagatcaag 3221 Query: 143 gaggaatgcac 153 | |||||||| Sbjct: 3222 gttgaatgcac 3232
>dbj|AK067680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114K24, full insert sequence Length = 1833 Score = 46.1 bits (23), Expect = 0.055 Identities = 59/71 (83%) Strand = Plus / Plus Query: 83 ctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaag 142 ||||| ||||| ||||||||||| |||||| | | |||||||| ||| | ||||||||| Sbjct: 651 ctgctgggcctggactccaagctggagaagaacttgctcatcccattcagggagatcaag 710 Query: 143 gaggaatgcac 153 | |||||||| Sbjct: 711 gttgaatgcac 721
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 68 cgccaggccgcgcggctgctcg 89 |||||||||||||||||||||| Sbjct: 1034680 cgccaggccgcgcggctgctcg 1034659
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 68 cgccaggccgcgcggctgctcg 89 |||||||||||||||||||||| Sbjct: 2352208 cgccaggccgcgcggctgctcg 2352187
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 68 cgccaggccgcgcggctgctcg 89 |||||||||||||||||||||| Sbjct: 1899461 cgccaggccgcgcggctgctcg 1899440
>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12 Length = 306250 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 cgccgcgccggcgacggagcc 34 ||||||||||||||||||||| Sbjct: 153901 cgccgcgccggcgacggagcc 153921
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 ggccgcgcggctgctcggcctcgac 97 |||||||| |||||||||||||||| Sbjct: 409726 ggccgcgctgctgctcggcctcgac 409702
>emb|AJ879896.1| Glycine max mRNA for glutamate dehydrogenase 2 (gdh2 gene) Length = 1500 Score = 42.1 bits (21), Expect = 0.86 Identities = 30/33 (90%) Strand = Plus / Plus Query: 98 tccaagctctagaagagcctcctcatccccttc 130 |||||||| |||||||||||||||| |||||| Sbjct: 155 tccaagcttgagaagagcctcctcatacccttc 187
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 0.86 Identities = 51/61 (83%) Strand = Plus / Plus Query: 83 ctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaag 142 ||||| ||||| ||||||||||| |||||| | | |||||||| ||| | ||||||||| Sbjct: 7750487 ctgctgggcctggactccaagctggagaagaacttgctcatcccattcagggagatcaag 7750546 Query: 143 g 143 | Sbjct: 7750547 g 7750547
>dbj|AP005194.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0565A07 Length = 152191 Score = 42.1 bits (21), Expect = 0.86 Identities = 51/61 (83%) Strand = Plus / Plus Query: 83 ctgctcggcctcgactccaagctctagaagagcctcctcatccccttccgcgagatcaag 142 ||||| ||||| ||||||||||| |||||| | | |||||||| ||| | ||||||||| Sbjct: 94576 ctgctgggcctggactccaagctggagaagaacttgctcatcccattcagggagatcaag 94635 Query: 143 g 143 | Sbjct: 94636 g 94636
>ref|NM_193875.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 516 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gcgccgcgccggcgacggag 32 |||||||||||||||||||| Sbjct: 257 gcgccgcgccggcgacggag 276
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 cgctggcctccttcgtgggcttcc 197 ||||||||| |||||||||||||| Sbjct: 1962290 cgctggcctgcttcgtgggcttcc 1962267
>emb|X86924.1|VVCSGDHGE V.vinifera mRNA for NAD(H) glutamate dehydrogenase Length = 1622 Score = 40.1 bits (20), Expect = 3.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 188 gtgggcttccgcgtgcagcatgacaatgcccgcgagcccatgaa 231 ||||| ||||| ||||||||||| ||||| || | ||||||||| Sbjct: 340 gtggggttccgtgtgcagcatgataatgctcgtgggcccatgaa 383
>emb|AJ420266.1|NTA420266 Nicotiana tabacum mRNA for glutamate dehydrogenase (gdh1 gene) Length = 1630 Score = 40.1 bits (20), Expect = 3.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 206 catgacaatgcccgcgagcccatgaaaggtggcatccgctaccaccccgaggttga 261 ||||||||||| |||| ||| |||||||| || ||| | ||||| || |||||||| Sbjct: 283 catgacaatgctcgcgggcctatgaaaggcggaatcagataccatcctgaggttga 338
>emb|AJ303070.1|VVI303070 Vitis vinifera gdhA gene for NADH glutamate dehydrogenase, exons 1-9 Length = 3146 Score = 40.1 bits (20), Expect = 3.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 188 gtgggcttccgcgtgcagcatgacaatgcccgcgagcccatgaa 231 ||||| ||||| ||||||||||| ||||| || | ||||||||| Sbjct: 530 gtggggttccgtgtgcagcatgataatgctcgtgggcccatgaa 573
>gb|AY026033.1| Rhodobacter sphaeroides pyridine nucleotide transhydrogenase alpha subunit (pntA) and pyridine nucleotide transhydrogenase beta subunit (pntB) genes, complete cds Length = 3522 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 cgctggcctccttcgtgggcttcc 197 ||||||||| |||||||||||||| Sbjct: 1590 cgctggcctgcttcgtgggcttcc 1613
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gcgccgcgccggcgacggag 32 |||||||||||||||||||| Sbjct: 15545026 gcgccgcgccggcgacggag 15545045
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cgcgcggctgctcggcctcg 95 |||||||||||||||||||| Sbjct: 3254349 cgcgcggctgctcggcctcg 3254368
>dbj|AP003204.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1111C09 Length = 156393 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gcgccgcgccggcgacggag 32 |||||||||||||||||||| Sbjct: 102535 gcgccgcgccggcgacggag 102554
>gb|AF052888.1|AF052888 Stomphia sp. 18S ribosomal RNA gene, partial sequence Length = 1818 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cgccgcgccggcgacggagc 33 |||||||||||||||||||| Sbjct: 1708 cgccgcgccggcgacggagc 1727
>gb|AY109014.1| Zea mays PCO154451 mRNA sequence Length = 674 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 gcgcggctgctcggcctcgactcc 100 |||||||||| ||||||||||||| Sbjct: 132 gcgcggctgcgcggcctcgactcc 155
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aagcgccgcgccggcgacgg 30 |||||||||||||||||||| Sbjct: 625573 aagcgccgcgccggcgacgg 625592
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ggcatccgctaccaccccga 255 |||||||||||||||||||| Sbjct: 766192 ggcatccgctaccaccccga 766173 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,889,761 Number of Sequences: 3902068 Number of extensions: 1889761 Number of successful extensions: 40921 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39620 Number of HSP's gapped (non-prelim): 1295 length of query: 261 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 239 effective length of database: 17,147,199,772 effective search space: 4098180745508 effective search space used: 4098180745508 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
