ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart21c02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473241.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 293 bits (148), Expect = 3e-76 Identities = 343/406 (84%), Gaps = 4/406 (0%) Strand = Plus / Plus Query: 179 gctctaccgccacgacaatggctggcacagcagccaggctccaatggtcggcaccatggt 238 |||||||||||||||||| |||||| |||| |||| || |||||||| | ||||| Sbjct: 135 gctctaccgccacgacaaaggctggtacagtagcctcatgcctatggtcggtgcgatggt 194 Query: 239 cgccgacgcatgcttcgccgcgcgctcctcggacgtcatcgtggccacgctgcccaagtc 298 ||||||||| | |||||||||||| |||| ||| ||||||| ||||| |||||||||| Sbjct: 195 cgccgacgcgcggttcgccgcgcgcccctccgacatcatcgtcgccaccttgcccaagtc 254 Query: 299 cggcacgacgtggatcaaggcgctcctctactccacggtgcaccggagggagcaccccgc 358 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 255 cggcacgacgtggatcaaggcgctcctctacgccacggtgcaccggagggagcaccccgc 314 Query: 359 gga---ctcccccggccacccgttcaacacccacggtcctcacgagtgcatcaagtttct 415 || | || ||| |||||| |||||| ||| ||| || ||||||||| |||| || || Sbjct: 315 cgacgccgccgccgaccaccctttcaactccctcggcccccacgagtgcgtcaacttcct 374 Query: 416 cgagtaccagctctacacgaggaacaggatcccggacctcgacgagctcccggacccaag 475 |||||||||||||||||| | ||||| |||||||||| | | ||| |||||||| || Sbjct: 375 cgagtaccagctctacaccaacaacagagtcccggacctgggcaggctgccggacccgag 434 Query: 476 gctcttcgccacgcacgtcccattcgtgtcgctgccgaggtcagtcatggcgtcgggctg 535 ||| ||||| ||||||||||| ||| |||||||||||| | | | |||||||||||| Sbjct: 435 gctgttcgcgacgcacgtcccgttcacgtcgctgccgagcgccgccgcggcgtcgggctg 494 Query: 536 caggatcgtgtacgtgtgccgcgacccc-aggacaccctgatctcg 580 || | ||||||||||||||||||||||| |||||| |||||||||| Sbjct: 495 caaggtcgtgtacgtgtgccgcgaccccaaggacaacctgatctcg 540 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Plus Query: 114 ctctaccagcggttcaccaacttggtgtcctcctggccgtgctc 157 |||||| ||| ||||||| ||| |||||||||||||||| |||| Sbjct: 70 ctctacaagcagttcaccgactcggtgtcctcctggccgagctc 113
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence Length = 141545 Score = 293 bits (148), Expect = 3e-76 Identities = 343/406 (84%), Gaps = 4/406 (0%) Strand = Plus / Plus Query: 179 gctctaccgccacgacaatggctggcacagcagccaggctccaatggtcggcaccatggt 238 |||||||||||||||||| |||||| |||| |||| || |||||||| | ||||| Sbjct: 70602 gctctaccgccacgacaaaggctggtacagtagcctcatgcctatggtcggtgcgatggt 70661 Query: 239 cgccgacgcatgcttcgccgcgcgctcctcggacgtcatcgtggccacgctgcccaagtc 298 ||||||||| | |||||||||||| |||| ||| ||||||| ||||| |||||||||| Sbjct: 70662 cgccgacgcgcggttcgccgcgcgcccctccgacatcatcgtcgccaccttgcccaagtc 70721 Query: 299 cggcacgacgtggatcaaggcgctcctctactccacggtgcaccggagggagcaccccgc 358 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 70722 cggcacgacgtggatcaaggcgctcctctacgccacggtgcaccggagggagcaccccgc 70781 Query: 359 gga---ctcccccggccacccgttcaacacccacggtcctcacgagtgcatcaagtttct 415 || | || ||| |||||| |||||| ||| ||| || ||||||||| |||| || || Sbjct: 70782 cgacgccgccgccgaccaccctttcaactccctcggcccccacgagtgcgtcaacttcct 70841 Query: 416 cgagtaccagctctacacgaggaacaggatcccggacctcgacgagctcccggacccaag 475 |||||||||||||||||| | ||||| |||||||||| | | ||| |||||||| || Sbjct: 70842 cgagtaccagctctacaccaacaacagagtcccggacctgggcaggctgccggacccgag 70901 Query: 476 gctcttcgccacgcacgtcccattcgtgtcgctgccgaggtcagtcatggcgtcgggctg 535 ||| ||||| ||||||||||| ||| |||||||||||| | | | |||||||||||| Sbjct: 70902 gctgttcgcgacgcacgtcccgttcacgtcgctgccgagcgccgccgcggcgtcgggctg 70961 Query: 536 caggatcgtgtacgtgtgccgcgacccc-aggacaccctgatctcg 580 || | ||||||||||||||||||||||| |||||| |||||||||| Sbjct: 70962 caaggtcgtgtacgtgtgccgcgaccccaaggacaacctgatctcg 71007 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Plus Query: 114 ctctaccagcggttcaccaacttggtgtcctcctggccgtgctc 157 |||||| ||| ||||||| ||| |||||||||||||||| |||| Sbjct: 70537 ctctacaagcagttcaccgactcggtgtcctcctggccgagctc 70580
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 293 bits (148), Expect = 3e-76 Identities = 343/406 (84%), Gaps = 4/406 (0%) Strand = Plus / Plus Query: 179 gctctaccgccacgacaatggctggcacagcagccaggctccaatggtcggcaccatggt 238 |||||||||||||||||| |||||| |||| |||| || |||||||| | ||||| Sbjct: 26294025 gctctaccgccacgacaaaggctggtacagtagcctcatgcctatggtcggtgcgatggt 26294084 Query: 239 cgccgacgcatgcttcgccgcgcgctcctcggacgtcatcgtggccacgctgcccaagtc 298 ||||||||| | |||||||||||| |||| ||| ||||||| ||||| |||||||||| Sbjct: 26294085 cgccgacgcgcggttcgccgcgcgcccctccgacatcatcgtcgccaccttgcccaagtc 26294144 Query: 299 cggcacgacgtggatcaaggcgctcctctactccacggtgcaccggagggagcaccccgc 358 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 26294145 cggcacgacgtggatcaaggcgctcctctacgccacggtgcaccggagggagcaccccgc 26294204 Query: 359 gga---ctcccccggccacccgttcaacacccacggtcctcacgagtgcatcaagtttct 415 || | || ||| |||||| |||||| ||| ||| || ||||||||| |||| || || Sbjct: 26294205 cgacgccgccgccgaccaccctttcaactccctcggcccccacgagtgcgtcaacttcct 26294264 Query: 416 cgagtaccagctctacacgaggaacaggatcccggacctcgacgagctcccggacccaag 475 |||||||||||||||||| | ||||| |||||||||| | | ||| |||||||| || Sbjct: 26294265 cgagtaccagctctacaccaacaacagagtcccggacctgggcaggctgccggacccgag 26294324 Query: 476 gctcttcgccacgcacgtcccattcgtgtcgctgccgaggtcagtcatggcgtcgggctg 535 ||| ||||| ||||||||||| ||| |||||||||||| | | | |||||||||||| Sbjct: 26294325 gctgttcgcgacgcacgtcccgttcacgtcgctgccgagcgccgccgcggcgtcgggctg 26294384 Query: 536 caggatcgtgtacgtgtgccgcgacccc-aggacaccctgatctcg 580 || | ||||||||||||||||||||||| |||||| |||||||||| Sbjct: 26294385 caaggtcgtgtacgtgtgccgcgaccccaaggacaacctgatctcg 26294430 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Plus Query: 114 ctctaccagcggttcaccaacttggtgtcctcctggccgtgctc 157 |||||| ||| ||||||| ||| |||||||||||||||| |||| Sbjct: 26293960 ctctacaagcagttcaccgactcggtgtcctcctggccgagctc 26294003
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 168 bits (85), Expect = 1e-38 Identities = 225/271 (83%), Gaps = 3/271 (1%) Strand = Plus / Minus Query: 225 gtcggcaccatggtcgccgacgcatgcttcgccgcgcgctcctcggacgtcatcgtggcc 284 ||||| || ||||||||||||| ||||||||||||| |||||||| || |||| || Sbjct: 24909439 gtcgggacgatggtcgccgacgagctcttcgccgcgcgcccctcggacatcgtcgtcccc 24909380 Query: 285 acgctgcccaagtccggcacgacgtggatcaaggcgctcctctactccacggtgcaccgg 344 || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 24909379 accctgcccaagtccggcacgacgtggatcaaggcgctgctctacgccacggtgcaccgg 24909320 Query: 345 agggagcaccccgcggactcccccgg---ccacccgttcaacacccacggtcctcacgag 401 || ||||| ||||| ||| || |||| |||||| |||||| ||| ||| || ||||| Sbjct: 24909319 agagagcatcccgccgacgccgccggcgaccaccccttcaactccctcggcccccacgaa 24909260 Query: 402 tgcatcaagtttctcgagtaccagctctacacgaggaacaggatcccggacctcgacgag 461 ||| |||| || ||||||||||| ||||||| | | || | ||| |||||||||| | Sbjct: 24909259 tgcgtcaaattcctcgagtaccatctctacagggcggacgaggcccccgacctcgacgcg 24909200 Query: 462 ctcccggacccaaggctcttcgccacgcacg 492 ||||||||||| |||| ||||| ||||||| Sbjct: 24909199 ctcccggacccgcggctgttcgcgacgcacg 24909169 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 89 cgatgatgccaaaaccaacgaagagctctaccagcggttcaccaacttggtgtcctcctg 148 |||||||||||||||| || | |||||||||||||| | |||| |||||||||| || || Sbjct: 24909575 cgatgatgccaaaacctacaaggagctctaccagcgctgcaccgacttggtgtcgtcatg 24909516 Query: 149 gccg 152 |||| Sbjct: 24909515 gccg 24909512 Score = 54.0 bits (27), Expect = 5e-04 Identities = 49/55 (89%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 526 cgtcgggctgcaggatcgtgtacgtgtgccgcgacccc-aggacaccctgatctc 579 |||||||||||| | |||| ||||||||||| |||||| ||||||||||| |||| Sbjct: 24909123 cgtcgggctgcaaggtcgtctacgtgtgccgtgaccccaaggacaccctggtctc 24909069 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 270 gacgtcatcgtggccacgctgcccaagtccggcacgacgtgg 311 |||||||||||||||| || ||||||| |||||| |||||| Sbjct: 7945081 gacgtcatcgtggccagcctccccaagtgcggcaccacgtgg 7945122
>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0530H05 Length = 145952 Score = 168 bits (85), Expect = 1e-38 Identities = 225/271 (83%), Gaps = 3/271 (1%) Strand = Plus / Minus Query: 225 gtcggcaccatggtcgccgacgcatgcttcgccgcgcgctcctcggacgtcatcgtggcc 284 ||||| || ||||||||||||| ||||||||||||| |||||||| || |||| || Sbjct: 3994 gtcgggacgatggtcgccgacgagctcttcgccgcgcgcccctcggacatcgtcgtcccc 3935 Query: 285 acgctgcccaagtccggcacgacgtggatcaaggcgctcctctactccacggtgcaccgg 344 || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 3934 accctgcccaagtccggcacgacgtggatcaaggcgctgctctacgccacggtgcaccgg 3875 Query: 345 agggagcaccccgcggactcccccgg---ccacccgttcaacacccacggtcctcacgag 401 || ||||| ||||| ||| || |||| |||||| |||||| ||| ||| || ||||| Sbjct: 3874 agagagcatcccgccgacgccgccggcgaccaccccttcaactccctcggcccccacgaa 3815 Query: 402 tgcatcaagtttctcgagtaccagctctacacgaggaacaggatcccggacctcgacgag 461 ||| |||| || ||||||||||| ||||||| | | || | ||| |||||||||| | Sbjct: 3814 tgcgtcaaattcctcgagtaccatctctacagggcggacgaggcccccgacctcgacgcg 3755 Query: 462 ctcccggacccaaggctcttcgccacgcacg 492 ||||||||||| |||| ||||| ||||||| Sbjct: 3754 ctcccggacccgcggctgttcgcgacgcacg 3724 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 89 cgatgatgccaaaaccaacgaagagctctaccagcggttcaccaacttggtgtcctcctg 148 |||||||||||||||| || | |||||||||||||| | |||| |||||||||| || || Sbjct: 4130 cgatgatgccaaaacctacaaggagctctaccagcgctgcaccgacttggtgtcgtcatg 4071 Query: 149 gccg 152 |||| Sbjct: 4070 gccg 4067 Score = 54.0 bits (27), Expect = 5e-04 Identities = 49/55 (89%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 526 cgtcgggctgcaggatcgtgtacgtgtgccgcgacccc-aggacaccctgatctc 579 |||||||||||| | |||| ||||||||||| |||||| ||||||||||| |||| Sbjct: 3678 cgtcgggctgcaaggtcgtctacgtgtgccgtgaccccaaggacaccctggtctc 3624
>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21 Length = 158287 Score = 168 bits (85), Expect = 1e-38 Identities = 225/271 (83%), Gaps = 3/271 (1%) Strand = Plus / Minus Query: 225 gtcggcaccatggtcgccgacgcatgcttcgccgcgcgctcctcggacgtcatcgtggcc 284 ||||| || ||||||||||||| ||||||||||||| |||||||| || |||| || Sbjct: 120522 gtcgggacgatggtcgccgacgagctcttcgccgcgcgcccctcggacatcgtcgtcccc 120463 Query: 285 acgctgcccaagtccggcacgacgtggatcaaggcgctcctctactccacggtgcaccgg 344 || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 120462 accctgcccaagtccggcacgacgtggatcaaggcgctgctctacgccacggtgcaccgg 120403 Query: 345 agggagcaccccgcggactcccccgg---ccacccgttcaacacccacggtcctcacgag 401 || ||||| ||||| ||| || |||| |||||| |||||| ||| ||| || ||||| Sbjct: 120402 agagagcatcccgccgacgccgccggcgaccaccccttcaactccctcggcccccacgaa 120343 Query: 402 tgcatcaagtttctcgagtaccagctctacacgaggaacaggatcccggacctcgacgag 461 ||| |||| || ||||||||||| ||||||| | | || | ||| |||||||||| | Sbjct: 120342 tgcgtcaaattcctcgagtaccatctctacagggcggacgaggcccccgacctcgacgcg 120283 Query: 462 ctcccggacccaaggctcttcgccacgcacg 492 ||||||||||| |||| ||||| ||||||| Sbjct: 120282 ctcccggacccgcggctgttcgcgacgcacg 120252 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 89 cgatgatgccaaaaccaacgaagagctctaccagcggttcaccaacttggtgtcctcctg 148 |||||||||||||||| || | |||||||||||||| | |||| |||||||||| || || Sbjct: 120658 cgatgatgccaaaacctacaaggagctctaccagcgctgcaccgacttggtgtcgtcatg 120599 Query: 149 gccg 152 |||| Sbjct: 120598 gccg 120595 Score = 54.0 bits (27), Expect = 5e-04 Identities = 49/55 (89%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 526 cgtcgggctgcaggatcgtgtacgtgtgccgcgacccc-aggacaccctgatctc 579 |||||||||||| | |||| ||||||||||| |||||| ||||||||||| |||| Sbjct: 120206 cgtcgggctgcaaggtcgtctacgtgtgccgtgaccccaaggacaccctggtctc 120152
>dbj|AK109408.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D04, full insert sequence Length = 1274 Score = 168 bits (85), Expect = 1e-38 Identities = 225/271 (83%), Gaps = 3/271 (1%) Strand = Plus / Plus Query: 225 gtcggcaccatggtcgccgacgcatgcttcgccgcgcgctcctcggacgtcatcgtggcc 284 ||||| || ||||||||||||| ||||||||||||| |||||||| || |||| || Sbjct: 243 gtcgggacgatggtcgccgacgagctcttcgccgcgcgcccctcggacatcgtcgtcccc 302 Query: 285 acgctgcccaagtccggcacgacgtggatcaaggcgctcctctactccacggtgcaccgg 344 || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 303 accctgcccaagtccggcacgacgtggatcaaggcgctgctctacgccacggtgcaccgg 362 Query: 345 agggagcaccccgcggactcccccgg---ccacccgttcaacacccacggtcctcacgag 401 || ||||| ||||| ||| || |||| |||||| |||||| ||| ||| || ||||| Sbjct: 363 agagagcatcccgccgacgccgccggcgaccaccccttcaactccctcggcccccacgaa 422 Query: 402 tgcatcaagtttctcgagtaccagctctacacgaggaacaggatcccggacctcgacgag 461 ||| |||| || ||||||||||| ||||||| | | || | ||| |||||||||| | Sbjct: 423 tgcgtcaaattcctcgagtaccatctctacagggcggacgaggcccccgacctcgacgcg 482 Query: 462 ctcccggacccaaggctcttcgccacgcacg 492 ||||||||||| |||| ||||| ||||||| Sbjct: 483 ctcccggacccgcggctgttcgcgacgcacg 513 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 89 cgatgatgccaaaaccaacgaagagctctaccagcggttcaccaacttggtgtcctcctg 148 |||||||||||||||| || | |||||||||||||| | |||| |||||||||| || || Sbjct: 107 cgatgatgccaaaacctacaaggagctctaccagcgctgcaccgacttggtgtcgtcatg 166 Query: 149 gccg 152 |||| Sbjct: 167 gccg 170 Score = 54.0 bits (27), Expect = 5e-04 Identities = 49/55 (89%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 526 cgtcgggctgcaggatcgtgtacgtgtgccgcgacccc-aggacaccctgatctc 579 |||||||||||| | |||| ||||||||||| |||||| ||||||||||| |||| Sbjct: 559 cgtcgggctgcaaggtcgtctacgtgtgccgtgaccccaaggacaccctggtctc 613
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 270 gacgtcatcgtggccacgctgcccaagtccggcacgacgtggatcaaggcgctc 323 ||||||||| | ||||| |||||||||||||| |||||||| ||||||||||| Sbjct: 27987091 gacgtcatcctcgccaccatgcccaagtccggctcgacgtggctcaaggcgctc 27987038
>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_A08 Length = 119304 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 270 gacgtcatcgtggccacgctgcccaagtccggcacgacgtggatcaaggcgctc 323 ||||||||| | ||||| |||||||||||||| |||||||| ||||||||||| Sbjct: 30753 gacgtcatcctcgccaccatgcccaagtccggctcgacgtggctcaaggcgctc 30700
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 270 gacgtcatcgtggccacgctgcccaagtccggcacgacgtggatcaaggcgctc 323 ||||||||| | ||||| |||||||||||||| |||||||| ||||||||||| Sbjct: 114543 gacgtcatcctcgccaccatgcccaagtccggctcgacgtggctcaaggcgctc 114490
>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046H10 Length = 155544 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 270 gacgtcatcgtggccacgctgcccaagtccggcacgacgtgg 311 |||||||||||||||| || ||||||| |||||| |||||| Sbjct: 52599 gacgtcatcgtggccagcctccccaagtgcggcaccacgtgg 52640
>dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054C04, full insert sequence Length = 1260 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 270 gacgtcatcgtggccacgctgcccaagtccggcacgacgtgg 311 |||||||||||||||| || ||||||| |||||| |||||| Sbjct: 282 gacgtcatcgtggccagcctccccaagtgcggcaccacgtgg 323
>ref|XM_480892.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||| || ||||||||| ||||||||||| Sbjct: 331 cccaagtcggggacgacgtggctcaaggcgctc 363
>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence Length = 130161 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 291 cccaagtccggcacgacgtggatcaaggcgctcctctactc 331 |||||||||||||| || |||||||| ||||| || ||||| Sbjct: 42749 cccaagtccggcaccacttggatcaaagcgcttctgtactc 42709 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 258 gcgcgctcctcggacgtcatcgtggccacgctgcccaagtccggcacgacgtggatcaag 317 |||||| || |||||||| || | ||||| | |||||||||||||| || ||| ||||| Sbjct: 24558 gcgcgcaccacggacgtcttcatcgccaccttccccaagtccggcaccacatggctcaag 24499 Query: 318 gcgct 322 ||||| Sbjct: 24498 gcgct 24494
>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21, complete sequence Length = 146539 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||||||||| || ||| ||||||||||| Sbjct: 115801 cccaagtccggcaccacctggctcaaggcgctc 115833 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||||||||| || ||| ||||||||||| Sbjct: 74335 cccaagtccggcaccacctggctcaaggcgctc 74367 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgct 322 |||||||||||||| || ||| |||||||||| Sbjct: 83588 cccaagtccggcaccacctggctcaaggcgct 83619
>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10, complete sequence Length = 157609 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||||||||| || ||| ||||||||||| Sbjct: 141794 cccaagtccggcaccacctggctcaaggcgctc 141826 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||||||||| || ||| ||||||||||| Sbjct: 100328 cccaagtccggcaccacctggctcaaggcgctc 100360 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgct 322 |||||||||||||| || ||| |||||||||| Sbjct: 109581 cccaagtccggcaccacctggctcaaggcgct 109612
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 cgccacgacaatggctggcac 206 ||||||||||||||||||||| Sbjct: 3130715 cgccacgacaatggctggcac 3130735
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 291 cccaagtccggcacgacgtggatcaaggcgctcctctactc 331 |||||||||||||| || |||||||| ||||| || ||||| Sbjct: 128923 cccaagtccggcaccacttggatcaaagcgcttctgtactc 128883 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 258 gcgcgctcctcggacgtcatcgtggccacgctgcccaagtccggcacgacgtggatcaag 317 |||||| || |||||||| || | ||||| | |||||||||||||| || ||| ||||| Sbjct: 110732 gcgcgcaccacggacgtcttcatcgccaccttccccaagtccggcaccacatggctcaag 110673 Query: 318 gcgct 322 ||||| Sbjct: 110672 gcgct 110668
>ref|NM_001670.1| Homo sapiens armadillo repeat gene deletes in velocardiofacial syndrome (ARVCF), mRNA Length = 4031 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 tactccacggtgcaccggagggagc 351 |||||||||||| |||||||||||| Sbjct: 2972 tactccacggtggaccggagggagc 2996
>gb|AC129908.4| Homo sapiens chromosome 18, clone RP11-1147P1, complete sequence Length = 190809 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 atgtcttcctcctccatgcag 68 ||||||||||||||||||||| Sbjct: 22992 atgtcttcctcctccatgcag 22972
>gb|AC005663.2| Homo sapiens chromosome 22 clone p888c9 map 22q11, complete sequence Length = 103122 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 tactccacggtgcaccggagggagc 351 |||||||||||| |||||||||||| Sbjct: 25785 tactccacggtggaccggagggagc 25761
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 258 gcgcgctcctcggacgtcatcgtggccacgctgcccaagtccggcacgacgtggatcaag 317 |||||| || |||||||| || | ||||| | |||||||||||||| || ||| ||||| Sbjct: 1822194 gcgcgcaccacggacgtcttcatcgccaccttccccaagtccggcaccacatggctcaag 1822135 Query: 318 gcgct 322 ||||| Sbjct: 1822134 gcgct 1822130 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 291 cccaagtccggcacgacgtggatcaaggcgct 322 |||||||||||||| || |||||||| ||||| Sbjct: 1837753 cccaagtccggcaccacttggatcaaagcgct 1837722
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||||||||| || ||| ||||||||||| Sbjct: 17387019 cccaagtccggcaccacctggctcaaggcgctc 17387051 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||||||||| || ||| ||||||||||| Sbjct: 17345404 cccaagtccggcaccacctggctcaaggcgctc 17345436 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 291 cccaagtccggcacgacgtggatcaaggcgctcctctactc 331 |||||||||||||| || |||||||| ||||| || ||||| Sbjct: 1911093 cccaagtccggcaccacttggatcaaagcgcttctgtactc 1911053 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 258 gcgcgctcctcggacgtcatcgtggccacgctgcccaagtccggcacgacgtggatcaag 317 |||||| || |||||||| || | ||||| | |||||||||||||| || ||| ||||| Sbjct: 1892902 gcgcgcaccacggacgtcttcatcgccaccttccccaagtccggcaccacatggctcaag 1892843 Query: 318 gcgct 322 ||||| Sbjct: 1892842 gcgct 1892838 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgct 322 |||||||||||||| || ||| |||||||||| Sbjct: 17354657 cccaagtccggcaccacctggctcaaggcgct 17354688
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||| || ||||||||| ||||||||||| Sbjct: 8458900 cccaagtcggggacgacgtggctcaaggcgctc 8458932
>dbj|AP003907.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1217_D10 Length = 103188 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||| || ||||||||| ||||||||||| Sbjct: 74617 cccaagtcggggacgacgtggctcaaggcgctc 74649
>dbj|AK061183.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D11, full insert sequence Length = 1225 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||||||||| || ||| ||||||||||| Sbjct: 270 cccaagtccggcaccacctggctcaaggcgctc 302
>dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H02, full insert sequence Length = 1222 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||||||||| || ||| ||||||||||| Sbjct: 245 cccaagtccggcaccacctggctcaaggcgctc 277
>gb|U51269.1|HSU51269 Human armadillo repeat protein mRNA, complete cds Length = 4031 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 tactccacggtgcaccggagggagc 351 |||||||||||| |||||||||||| Sbjct: 2972 tactccacggtggaccggagggagc 2996
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||||||||| || ||| ||||||||||| Sbjct: 17480729 cccaagtccggcaccacctggctcaaggcgctc 17480761 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgctc 323 |||||||||||||| || ||| ||||||||||| Sbjct: 17439263 cccaagtccggcaccacctggctcaaggcgctc 17439295 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 291 cccaagtccggcacgacgtggatcaaggcgctcctctactc 331 |||||||||||||| || |||||||| ||||| || ||||| Sbjct: 1908814 cccaagtccggcaccacttggatcaaagcgcttctgtactc 1908774 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 258 gcgcgctcctcggacgtcatcgtggccacgctgcccaagtccggcacgacgtggatcaag 317 |||||| || |||||||| || | ||||| | |||||||||||||| || ||| ||||| Sbjct: 1890623 gcgcgcaccacggacgtcttcatcgccaccttccccaagtccggcaccacatggctcaag 1890564 Query: 318 gcgct 322 ||||| Sbjct: 1890563 gcgct 1890559 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgct 322 |||||||||||||| || ||| |||||||||| Sbjct: 17448516 cccaagtccggcaccacctggctcaaggcgct 17448547
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 258 gcgcgctcctcggacgtcatcgtggccacgctgcccaagtccggcacgacgtggatcaag 317 |||||| || |||||||| || | ||||| | |||||||||||||| || ||| ||||| Sbjct: 1822172 gcgcgcaccacggacgtcttcatcgccaccttccccaagtccggcaccacatggctcaag 1822113 Query: 318 gcgct 322 ||||| Sbjct: 1822112 gcgct 1822108 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 291 cccaagtccggcacgacgtggatcaaggcgct 322 |||||||||||||| || |||||||| ||||| Sbjct: 1837731 cccaagtccggcaccacttggatcaaagcgct 1837700
>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128619 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Minus Query: 258 gcgcgctcctcggacgtcatcgtggccacgctgcccaagtccggcacgacgtggatcaag 317 |||||| || |||||||| || | ||||| | |||||||||||||| || ||| ||||| Sbjct: 16912 gcgcgcaccacggacgtcttcatcgccaccttccccaagtccggcaccacatggctcaag 16853 Query: 318 gcgct 322 ||||| Sbjct: 16852 gcgct 16848 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 291 cccaagtccggcacgacgtggatcaaggcgct 322 |||||||||||||| || |||||||| ||||| Sbjct: 32471 cccaagtccggcaccacttggatcaaagcgct 32440
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 42.1 bits (21), Expect = 2.1 Identities = 54/65 (83%) Strand = Plus / Plus Query: 258 gcgcgctcctcggacgtcatcgtggccacgctgcccaagtccggcacgacgtggatcaag 317 |||||| || |||||||| || | ||||| | |||||||||||||| || ||| ||||| Sbjct: 18288 gcgcgcaccacggacgtcttcatcgccaccttccccaagtccggcaccacatggctcaag 18347 Query: 318 gcgct 322 ||||| Sbjct: 18348 gcgct 18352 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 291 cccaagtccggcacgacgtggatcaaggcgct 322 |||||||||||||| || |||||||| ||||| Sbjct: 2729 cccaagtccggcaccacttggatcaaagcgct 2760
>gb|AE010419.1| Methanopyrus kandleri AV19 section 118 of 157 of the complete genome Length = 10115 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 cctcgacgagctcccggacc 471 |||||||||||||||||||| Sbjct: 637 cctcgacgagctcccggacc 618
>ref|XM_755600.1| Ustilago maydis 521 hypothetical protein (UM04546.1) partial mRNA Length = 1959 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 acaatggctggcacagcagc 212 |||||||||||||||||||| Sbjct: 1618 acaatggctggcacagcagc 1637
>ref|XM_689400.1| PREDICTED: Danio rerio similar to Opsin-4 (Melanopsin) (LOC566133), mRNA Length = 1539 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gcagatctctccaccgcaag 84 |||||||||||||||||||| Sbjct: 907 gcagatctctccaccgcaag 926
>gb|AC082651.6| Homo sapiens BAC clone RP11-521D12 from 2, complete sequence Length = 203770 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ggctggcacagcagccaggc 217 |||||||||||||||||||| Sbjct: 194683 ggctggcacagcagccaggc 194664
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 cctcgacgagctcccggacc 471 |||||||||||||||||||| Sbjct: 6759726 cctcgacgagctcccggacc 6759707
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 567 acaccctgatctcgcactgg 586 |||||||||||||||||||| Sbjct: 3245785 acaccctgatctcgcactgg 3245766
>dbj|AK110416.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-H06, full insert sequence Length = 3859 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 agtccggcacgacgtggatc 314 |||||||||||||||||||| Sbjct: 358 agtccggcacgacgtggatc 377
>emb|CR854941.8| Zebrafish DNA sequence from clone CH211-214G6 in linkage group 12, complete sequence Length = 135174 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 gcagatctctccaccgcaag 84 |||||||||||||||||||| Sbjct: 127067 gcagatctctccaccgcaag 127086
>emb|AL132642.4|CNS01DT7 Human chromosome 14 DNA sequence BAC R-131H24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 182643 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gacaatggctggcacagcag 211 |||||||||||||||||||| Sbjct: 110216 gacaatggctggcacagcag 110235 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,443,289 Number of Sequences: 3902068 Number of extensions: 3443289 Number of successful extensions: 58989 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58358 Number of HSP's gapped (non-prelim): 617 length of query: 596 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 573 effective length of database: 17,143,297,704 effective search space: 9823109584392 effective search space used: 9823109584392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
