ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart19g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468970.1| Oryza sativa (japonica cultivar-group), mRNA Length = 707 Score = 119 bits (60), Expect = 1e-23 Identities = 110/127 (86%), Gaps = 6/127 (4%) Strand = Plus / Plus Query: 382 tgaagcggtcgccgagccagagcagcgtggtcaccgcgcagccggaagaggaccccgaga 441 ||||| ||||| |||||||||||||||||||||||||| |||| || ||||| | Sbjct: 229 tgaagaggtcggcgagccagagcagcgtggtcaccgcggagcccgat------cccgaca 282 Query: 442 agccgcgcgcgcccaaggcgcaggcggtggggtggccgccggtgcggtcgttccggagga 501 |||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| || Sbjct: 283 agccgcgcgcgcccaaggcgcaggtggtggggtggccgccggtccggtcgttcaggaaga 342 Query: 502 acatgct 508 || |||| Sbjct: 343 acgtgct 349 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 227 gaggagctccggcaagaggggctacgccgagaccatcgacctcatgctgaagctggagcc 286 ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||| Sbjct: 74 gaggagctccggcaagaggggcttcgccgagaccatcgacctcaagctcaagctgcagcc 133 Score = 83.8 bits (42), Expect = 6e-13 Identities = 45/46 (97%) Strand = Plus / Plus Query: 509 ggcggcggcgctggtgaaggtgagcatggacggcgcgccctacctg 554 ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 365 ggcggcggcgctggtgaaggtgagcatggacggcgcgccgtacctg 410 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 150 atggcgggcctcgggttcgaggagaccgagctgcggctcggcctgccaggcggcggc 206 ||||| |||||||||||||| ||||||||||| ||||||||||| || |||| |||| Sbjct: 6 atggctggcctcgggttcgacgagaccgagctccggctcggccttcccggcgccggc 62
>ref|XM_550382.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1054 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 453 cccaaggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacatgctggcg 512 ||||||||| || ||||||||||||||||||| |||||||| ||| |||| ||||||| Sbjct: 338 cccaaggcgagggtggtggggtggccgccggtgaggtcgttcaggaagaacgcgctggcg 397 Query: 513 gcggcgctggtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 || | | ||||||||| | ||||||||||||| |||||||||||||||||| Sbjct: 398 gccaagttcgtgaaggtggccgtggacggcgcgccgtacctgcgcaaggtggac 451
>dbj|AK109373.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-G03, full insert sequence Length = 1118 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 453 cccaaggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacatgctggcg 512 ||||||||| || ||||||||||||||||||| |||||||| ||| |||| ||||||| Sbjct: 338 cccaaggcgagggtggtggggtggccgccggtgaggtcgttcaggaagaacgcgctggcg 397 Query: 513 gcggcgctggtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 || | | ||||||||| | ||||||||||||| |||||||||||||||||| Sbjct: 398 gccaagttcgtgaaggtggccgtggacggcgcgccgtacctgcgcaaggtggac 451
>dbj|AK100800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121G17, full insert sequence Length = 1078 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 453 cccaaggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacatgctggcg 512 ||||||||| || ||||||||||||||||||| |||||||| ||| |||| ||||||| Sbjct: 340 cccaaggcgagggtggtggggtggccgccggtgaggtcgttcaggaagaacgcgctggcg 399 Query: 513 gcggcgctggtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 || | | ||||||||| | ||||||||||||| |||||||||||||||||| Sbjct: 400 gccaagttcgtgaaggtggccgtggacggcgcgccgtacctgcgcaaggtggac 453
>dbj|AK069242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010B20, full insert sequence Length = 1089 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 453 cccaaggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacatgctggcg 512 ||||||||| || ||||||||||||||||||| |||||||| ||| |||| ||||||| Sbjct: 330 cccaaggcgagggtggtggggtggccgccggtgaggtcgttcaggaagaacgcgctggcg 389 Query: 513 gcggcgctggtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 || | | ||||||||| | ||||||||||||| |||||||||||||||||| Sbjct: 390 gccaagttcgtgaaggtggccgtggacggcgcgccgtacctgcgcaaggtggac 443
>dbj|AK060091.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-D01, full insert sequence Length = 1054 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 453 cccaaggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacatgctggcg 512 ||||||||| || ||||||||||||||||||| |||||||| ||| |||| ||||||| Sbjct: 338 cccaaggcgagggtggtggggtggccgccggtgaggtcgttcaggaagaacgcgctggcg 397 Query: 513 gcggcgctggtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 || | | ||||||||| | ||||||||||||| |||||||||||||||||| Sbjct: 398 gccaagttcgtgaaggtggccgtggacggcgcgccgtacctgcgcaaggtggac 451
>gb|AY103836.1| Zea mays PCO135053 mRNA sequence Length = 1519 Score = 91.7 bits (46), Expect = 2e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 233 ctccggcaagaggggctacgccgagaccatcgacctcatgctgaagctggagccagcg 290 ||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||| Sbjct: 291 ctccggcaagaggggcttcgccgagaccatcgacctgaagctgaagctggagccagcg 348 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 436 ccgagaagccgcgcgcgcccaaggcgcaggcggtggggtggccgccggtgcggtcgttcc 495 |||||||||||||||| ||||||| |||| |||||| ||||| ||||| |||||||||| Sbjct: 485 ccgagaagccgcgcgccgccaaggctcaggtggtgggatggccaccggtccggtcgttcc 544 Query: 496 ggaggaacat 505 ||| |||||| Sbjct: 545 ggaagaacat 554 Score = 73.8 bits (37), Expect = 6e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 649 gtgaaggtgagcttggacggcgcgccctacctgcgcaaagtggac 693 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Plus Query: 382 tgaagcggtcgccgagccagagcagcgt 409 |||||||||| ||||||||||||||||| Sbjct: 428 tgaagcggtccccgagccagagcagcgt 455
>gb|AC145780.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0069P02 map near S13580, complete sequence Length = 88044 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 227 gaggagctccggcaagaggggctacgccgagaccatcgacctcatgctgaagctggagcc 286 ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||| Sbjct: 3342 gaggagctccggcaagaggggcttcgccgagaccatcgacctcaagctcaagctgcagcc 3401 Score = 83.8 bits (42), Expect = 6e-13 Identities = 45/46 (97%) Strand = Plus / Plus Query: 509 ggcggcggcgctggtgaaggtgagcatggacggcgcgccctacctg 554 ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 5120 ggcggcggcgctggtgaaggtgagcatggacggcgcgccgtacctg 5165 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 150 atggcgggcctcgggttcgaggagaccgagctgcggctcggcctgccaggcggcggc 206 ||||| |||||||||||||| ||||||||||| ||||||||||| || |||| |||| Sbjct: 3274 atggctggcctcgggttcgacgagaccgagctccggctcggccttcccggcgccggc 3330 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacatgct 508 |||||||| |||||||||||||||||| ||||||||| ||| |||| |||| Sbjct: 5054 ggcgcaggtggtggggtggccgccggtccggtcgttcaggaagaacgtgct 5104 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 382 tgaagcggtcgccgagccagagcagcgtggtcaccgcgcagcc 424 ||||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 3497 tgaagaggtcggcgagccagagcagcgtggtcaccgcggagcc 3539
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Minus Query: 227 gaggagctccggcaagaggggctacgccgagaccatcgacctcatgctgaagctggagcc 286 ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||| Sbjct: 24088114 gaggagctccggcaagaggggcttcgccgagaccatcgacctcaagctcaagctgcagcc 24088055 Score = 83.8 bits (42), Expect = 6e-13 Identities = 45/46 (97%) Strand = Plus / Minus Query: 509 ggcggcggcgctggtgaaggtgagcatggacggcgcgccctacctg 554 ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24086336 ggcggcggcgctggtgaaggtgagcatggacggcgcgccgtacctg 24086291 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||| ||||||||||| || ||||||||||||||||||||| Sbjct: 30189186 gtgaaggtcagcatggacggggcaccctacctgcgcaaggtggac 30189142 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 150 atggcgggcctcgggttcgaggagaccgagctgcggctcggcctgccaggcggcggc 206 ||||| |||||||||||||| ||||||||||| ||||||||||| || |||| |||| Sbjct: 24088182 atggctggcctcgggttcgacgagaccgagctccggctcggccttcccggcgccggc 24088126 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 382 tgaagcggtcgccgagccagagcagcgtggtcaccgcgcagcc 424 ||||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 24087959 tgaagaggtcggcgagccagagcagcgtggtcaccgcggagcc 24087917 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacatgct 508 |||||||| |||||||||||||||||| ||||||||| ||| |||| |||| Sbjct: 24086402 ggcgcaggtggtggggtggccgccggtccggtcgttcaggaagaacgtgct 24086352 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 517 cgctggtgaaggtgagcatggacggcgcgccctacctg 554 ||||||||||||||||||||||||| ||||| |||||| Sbjct: 24100613 cgctggtgaaggtgagcatggacggggcgccgtacctg 24100650 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggt 562 |||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 32942913 gtgaaggtgagcatggacggggcgccatacctccgcaaggt 32942873 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 461 gcaggcggtggggtggccgccggtgcggtcgttccggagga 501 ||||| ||||||||||||||||||| |||||| | |||||| Sbjct: 32943055 gcaggtggtggggtggccgccggtggggtcgtacaggagga 32943015 Score = 48.1 bits (24), Expect = 0.032 Identities = 42/48 (87%) Strand = Plus / Minus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacat 505 ||||||||| ||||| ||||| || || ||||||||||| |||||||| Sbjct: 30189334 ggcgcaggcagtgggttggccaccagttcggtcgttccgcaggaacat 30189287
>gb|AY622358.1| Festuca rubra clone RF-150 EST-SRR marker sequence Length = 177 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 133
>gb|AY622357.1| Lolium perenne clone PR-150 EST-SRR marker sequence Length = 180 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 136
>gb|AY622356.1| Dactylis glomerata clone OG-150 EST-SRR marker sequence Length = 174 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 130
>gb|AY622354.1| Lolium temulentum clone LT-150 EST-SRR marker sequence Length = 176 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 132
>gb|AY622353.1| Lolium multiflorum clone IR-150 EST-SRR marker sequence Length = 180 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 136
>gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genomic sequence, complete sequence Length = 140980 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 227 gaggagctccggcaagaggggctacgccgagaccatcgacctcatgctgaagctggagcc 286 ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||| Sbjct: 134442 gaggagctccggcaagaggggcttcgccgagaccatcgacctcaagctcaagctgcagcc 134501 Score = 83.8 bits (42), Expect = 6e-13 Identities = 45/46 (97%) Strand = Plus / Plus Query: 509 ggcggcggcgctggtgaaggtgagcatggacggcgcgccctacctg 554 ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 136220 ggcggcggcgctggtgaaggtgagcatggacggcgcgccgtacctg 136265 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 150 atggcgggcctcgggttcgaggagaccgagctgcggctcggcctgccaggcggcggc 206 ||||| |||||||||||||| ||||||||||| ||||||||||| || |||| |||| Sbjct: 134374 atggctggcctcgggttcgacgagaccgagctccggctcggccttcccggcgccggc 134430 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacatgct 508 |||||||| |||||||||||||||||| ||||||||| ||| |||| |||| Sbjct: 136154 ggcgcaggtggtggggtggccgccggtccggtcgttcaggaagaacgtgct 136204 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 382 tgaagcggtcgccgagccagagcagcgtggtcaccgcgcagcc 424 ||||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 134597 tgaagaggtcggcgagccagagcagcgtggtcaccgcggagcc 134639 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 517 cgctggtgaaggtgagcatggacggcgcgccctacctg 554 ||||||||||||||||||||||||| ||||| |||||| Sbjct: 123219 cgctggtgaaggtgagcatggacggggcgccgtacctg 123182
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Minus Query: 227 gaggagctccggcaagaggggctacgccgagaccatcgacctcatgctgaagctggagcc 286 ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||| Sbjct: 24005583 gaggagctccggcaagaggggcttcgccgagaccatcgacctcaagctcaagctgcagcc 24005524 Score = 83.8 bits (42), Expect = 6e-13 Identities = 45/46 (97%) Strand = Plus / Minus Query: 509 ggcggcggcgctggtgaaggtgagcatggacggcgcgccctacctg 554 ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 24003805 ggcggcggcgctggtgaaggtgagcatggacggcgcgccgtacctg 24003760 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||| ||||||||||| || ||||||||||||||||||||| Sbjct: 30280608 gtgaaggtcagcatggacggggcaccctacctgcgcaaggtggac 30280564 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 150 atggcgggcctcgggttcgaggagaccgagctgcggctcggcctgccaggcggcggc 206 ||||| |||||||||||||| ||||||||||| ||||||||||| || |||| |||| Sbjct: 24005651 atggctggcctcgggttcgacgagaccgagctccggctcggccttcccggcgccggc 24005595 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 382 tgaagcggtcgccgagccagagcagcgtggtcaccgcgcagcc 424 ||||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 24005428 tgaagaggtcggcgagccagagcagcgtggtcaccgcggagcc 24005386 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacatgct 508 |||||||| |||||||||||||||||| ||||||||| ||| |||| |||| Sbjct: 24003871 ggcgcaggtggtggggtggccgccggtccggtcgttcaggaagaacgtgct 24003821 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 517 cgctggtgaaggtgagcatggacggcgcgccctacctg 554 ||||||||||||||||||||||||| ||||| |||||| Sbjct: 24016900 cgctggtgaaggtgagcatggacggggcgccgtacctg 24016937 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggt 562 |||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 33033423 gtgaaggtgagcatggacggggcgccatacctccgcaaggt 33033383 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 461 gcaggcggtggggtggccgccggtgcggtcgttccggagga 501 ||||| ||||||||||||||||||| |||||| | |||||| Sbjct: 33033565 gcaggtggtggggtggccgccggtggggtcgtacaggagga 33033525 Score = 48.1 bits (24), Expect = 0.032 Identities = 42/48 (87%) Strand = Plus / Minus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacat 505 ||||||||| ||||| ||||| || || ||||||||||| |||||||| Sbjct: 30280756 ggcgcaggcagtgggttggccaccagttcggtcgttccgcaggaacat 30280709
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 467 ggtggggtggccgccggtgcggtcgttccggaggaacatgctggcggcggcgctggtgaa 526 ||||||||||||||||||| |||||||| ||| |||| ||||||||| | | ||||| Sbjct: 4074991 ggtggggtggccgccggtgaggtcgttcaggaagaacgcgctggcggccaagttcgtgaa 4074932 Query: 527 ggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||| | ||||||||||||| |||||||||||||||||| Sbjct: 4074931 ggtggccgtggacggcgcgccgtacctgcgcaaggtggac 4074892 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 468 gtggggtggccgccggtgcggtcgttccggaggaac 503 |||||||||||||||||||||||||||||| ||||| Sbjct: 4816762 gtggggtggccgccggtgcggtcgttccggcggaac 4816797 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 468 gtggggtggccgccggtgcggtcgttccgg 497 |||||||||||||||||||||||||||||| Sbjct: 6369119 gtggggtggccgccggtgcggtcgttccgg 6369148
>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0509B06 Length = 104515 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 467 ggtggggtggccgccggtgcggtcgttccggaggaacatgctggcggcggcgctggtgaa 526 ||||||||||||||||||| |||||||| ||| |||| ||||||||| | | ||||| Sbjct: 41734 ggtggggtggccgccggtgaggtcgttcaggaagaacgcgctggcggccaagttcgtgaa 41675 Query: 527 ggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||| | ||||||||||||| |||||||||||||||||| Sbjct: 41674 ggtggccgtggacggcgcgccgtacctgcgcaaggtggac 41635
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 87.7 bits (44), Expect = 4e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 467 ggtggggtggccgccggtgcggtcgttccggaggaacatgctggcggcggcgctggtgaa 526 ||||||||||||||||||| |||||||| ||| |||| ||||||||| | | ||||| Sbjct: 21962 ggtggggtggccgccggtgaggtcgttcaggaagaacgcgctggcggccaagttcgtgaa 21903 Query: 527 ggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||| | ||||||||||||| |||||||||||||||||| Sbjct: 21902 ggtggccgtggacggcgcgccgtacctgcgcaaggtggac 21863
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 233 ctccggcaagaggggctacgccgagaccatcgacctcatgctgaagctggagcc 286 |||||| |||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 25349403 ctccgggaagaggggcttcgccgagaccatcgacctcaagctgaagctggagcc 25349350 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Minus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 25346752 gtgaaggtgagcatggacggcgcgccatacctgcgcaaggtggac 25346708 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 382 tgaagcggtcgccgagccagagcagcgtggtcaccgc 418 |||||||||||||||||||||||||||| |||||||| Sbjct: 25349218 tgaagcggtcgccgagccagagcagcgtcgtcaccgc 25349182 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 165 ttcgaggagaccgagctgcggctcggcctgccaggcggcggc 206 ||||||| ||||||||| |||||||||||||| ||||||||| Sbjct: 25349483 ttcgaggcgaccgagctccggctcggcctgcccggcggcggc 25349442 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgt 492 |||||||| |||||| |||||||||||| |||||| Sbjct: 25359530 ggcgcaggtggtgggatggccgccggtgaggtcgt 25359564 Score = 44.1 bits (22), Expect = 0.49 Identities = 43/50 (86%) Strand = Plus / Minus Query: 462 caggcggtggggtggccgccggtgcggtcgttccggaggaacatgctggc 511 |||| ||| |||||||||||||| ||||| | ||||| |||||| ||||| Sbjct: 25346881 caggtggttgggtggccgccggtccggtcataccggaagaacatcctggc 25346832 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctg 554 |||||||||||||||||||| || || |||||| Sbjct: 25359681 gtgaaggtgagcatggacggagctccatacctg 25359713
>dbj|AK068213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K13, full insert sequence Length = 1545 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 233 ctccggcaagaggggctacgccgagaccatcgacctcatgctgaagctggagcc 286 |||||| |||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 351 ctccgggaagaggggcttcgccgagaccatcgacctcaagctgaagctggagcc 404 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 739 gtgaaggtgagcatggacggcgcgccatacctgcgcaaggtggac 783 Score = 81.8 bits (41), Expect = 2e-12 Identities = 109/131 (83%), Gaps = 8/131 (6%) Strand = Plus / Plus Query: 382 tgaagcggtcgccgagccagagcagcgtggtcaccg-cgcagccggaagaggaccccgag 440 |||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||| Sbjct: 536 tgaagcggtcgccgagccagagcagcgtcgtcaccgccgccgcc-------gaccccgag 588 Query: 441 aagccgcgcgcgcccaaggcgcaggcggtggggtggccgccggtgcggtcgttccggagg 500 ||||| | || |||||||| |||| ||| |||||||||||||| ||||| | ||||| | Sbjct: 589 aagccaagggctcccaaggcacaggtggttgggtggccgccggtccggtcataccggaag 648 Query: 501 aacatgctggc 511 ||||| ||||| Sbjct: 649 aacatcctggc 659 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 165 ttcgaggagaccgagctgcggctcggcctgccaggcggcggc 206 ||||||| ||||||||| |||||||||||||| ||||||||| Sbjct: 271 ttcgaggcgaccgagctccggctcggcctgcccggcggcggc 312
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 233 ctccggcaagaggggctacgccgagaccatcgacctcatgctgaagctggagcc 286 |||||| |||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 25277579 ctccgggaagaggggcttcgccgagaccatcgacctcaagctgaagctggagcc 25277526 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Minus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 25274928 gtgaaggtgagcatggacggcgcgccatacctgcgcaaggtggac 25274884 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 382 tgaagcggtcgccgagccagagcagcgtggtcaccgc 418 |||||||||||||||||||||||||||| |||||||| Sbjct: 25277394 tgaagcggtcgccgagccagagcagcgtcgtcaccgc 25277358 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 165 ttcgaggagaccgagctgcggctcggcctgccaggcggcggc 206 ||||||| ||||||||| |||||||||||||| ||||||||| Sbjct: 25277659 ttcgaggcgaccgagctccggctcggcctgcccggcggcggc 25277618 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgt 492 |||||||| |||||| |||||||||||| |||||| Sbjct: 25287706 ggcgcaggtggtgggatggccgccggtgaggtcgt 25287740 Score = 44.1 bits (22), Expect = 0.49 Identities = 43/50 (86%) Strand = Plus / Minus Query: 462 caggcggtggggtggccgccggtgcggtcgttccggaggaacatgctggc 511 |||| ||| |||||||||||||| ||||| | ||||| |||||| ||||| Sbjct: 25275057 caggtggttgggtggccgccggtccggtcataccggaagaacatcctggc 25275008 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctg 554 |||||||||||||||||||| || || |||||| Sbjct: 25287857 gtgaaggtgagcatggacggagctccatacctg 25287889
>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152914 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 233 ctccggcaagaggggctacgccgagaccatcgacctcatgctgaagctggagcc 286 |||||| |||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 16213 ctccgggaagaggggcttcgccgagaccatcgacctcaagctgaagctggagcc 16160 Score = 81.8 bits (41), Expect = 2e-12 Identities = 44/45 (97%) Strand = Plus / Minus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 13562 gtgaaggtgagcatggacggcgcgccatacctgcgcaaggtggac 13518 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 382 tgaagcggtcgccgagccagagcagcgtggtcaccgc 418 |||||||||||||||||||||||||||| |||||||| Sbjct: 16028 tgaagcggtcgccgagccagagcagcgtcgtcaccgc 15992 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 165 ttcgaggagaccgagctgcggctcggcctgccaggcggcggc 206 ||||||| ||||||||| |||||||||||||| ||||||||| Sbjct: 16293 ttcgaggcgaccgagctccggctcggcctgcccggcggcggc 16252 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgt 492 |||||||| |||||| |||||||||||| |||||| Sbjct: 26340 ggcgcaggtggtgggatggccgccggtgaggtcgt 26374 Score = 44.1 bits (22), Expect = 0.49 Identities = 43/50 (86%) Strand = Plus / Minus Query: 462 caggcggtggggtggccgccggtgcggtcgttccggaggaacatgctggc 511 |||| ||| |||||||||||||| ||||| | ||||| |||||| ||||| Sbjct: 13691 caggtggttgggtggccgccggtccggtcataccggaagaacatcctggc 13642 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctg 554 |||||||||||||||||||| || || |||||| Sbjct: 26491 gtgaaggtgagcatggacggagctccatacctg 26523
>gb|AY622365.1| Triticum aestivum clone WH-150 EST-SRR marker sequence Length = 174 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Plus Query: 525 aaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 aaggtgagcatggacggcgcgccctacctgcgcaaggtgga 130
>gb|AY622364.1| Thinopyrum ponticum clone TW-150 EST-SRR marker sequence Length = 174 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Plus Query: 525 aaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 aaggtgagcatggacggcgcgccctacctgcgcaaggtgga 130
>gb|AY622361.1| Bromus inermis clone SB-150 EST-SRR marker sequence Length = 171 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Plus Query: 525 aaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 aaggtgagcatggacggcgcgccctacctgcgcaaggtgga 127
>gb|AY622360.1| Psathyrostachys juncea clone RW-150 EST-SRR marker sequence Length = 174 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Plus Query: 525 aaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 aaggtgagcatggacggcgcgccctacctgcgcaaggtgga 130
>emb|AJ575098.1|TAE575098 Triticum aestivum partial mRNA for IAA1 protein Length = 1104 Score = 81.8 bits (41), Expect = 2e-12 Identities = 41/41 (100%) Strand = Plus / Plus Query: 525 aaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 461 aaggtgagcatggacggcgcgccctacctgcgcaaggtgga 501 Score = 48.1 bits (24), Expect = 0.032 Identities = 60/72 (83%) Strand = Plus / Plus Query: 432 gaccccgagaagccgcgcgcgcccaaggcgcaggcggtggggtggccgccggtgcggtcg 491 |||||||||||||| | || |||||||| ||||| ||||| ||||| || || |||||| Sbjct: 287 gaccccgagaagccacctgctcccaaggcacaggccgtgggttggccaccagtccggtcg 346 Query: 492 ttccggaggaac 503 | ||| |||||| Sbjct: 347 taccgcaggaac 358
>gb|AY622355.1| Schedonorus pratensis clone MF-150 EST-SRR marker sequence Length = 180 Score = 79.8 bits (40), Expect = 9e-12 Identities = 43/44 (97%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 ||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 93 gtgaaggtgagcatggacggcgcaccctacctgcgcaaggtgga 136
>gb|AY847064.1| Avena sativa Aux/IAA3 mRNA, partial cds Length = 360 Score = 79.8 bits (40), Expect = 9e-12 Identities = 43/44 (97%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 166 gtgaaggtgagcatggacggtgcgccctacctgcgcaaggtgga 209
>gb|AY781902.1| Saccharum hybrid cultivar isolate c57 auxin-induced protein mRNA, partial cds Length = 1046 Score = 75.8 bits (38), Expect = 1e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 436 ccgagaagccgcgcgcgcccaaggcgcaggcggtggggtggccgccggtgcggtcgttcc 495 |||||||||||||||| ||||| || |||| |||||| ||||| ||||| |||||||||| Sbjct: 46 ccgagaagccgcgcgcccccaaagctcaggtggtgggatggccaccggtccggtcgttcc 105 Query: 496 ggaggaacat 505 ||| |||||| Sbjct: 106 ggaagaacat 115 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||||||| | ||||||||||| |||||||||||||||||| Sbjct: 216 gtgaaggtgagcttagacggcgcgccatacctgcgcaaggtggac 260
>gb|AY622359.1| Oryza sativa clone RI-150 EST-SRR marker sequence Length = 180 Score = 73.8 bits (37), Expect = 6e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 93 gtgaaggtcagcatggacggcgcaccctacctgcgcaaggtggac 137
>gb|AY622362.1| Schedonorus arundinaceus clone TFS-150 EST-SRR marker sequence Length = 186 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtgga 565 |||||||||||||||||||| || |||||||||||||||||||| Sbjct: 99 gtgaaggtgagcatggacggtgcaccctacctgcgcaaggtgga 142
>ref|XM_469684.1| Oryza sativa (japonica cultivar-group), mRNA Length = 811 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||| ||||||||||| || ||||||||||||||||||||| Sbjct: 500 gtgaaggtcagcatggacggggcaccctacctgcgcaaggtggac 544 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 436 ccgagaagccgcgcgcgcccaaggcgcaggcggtggggtggccgccggtgcggtcgttcc 495 |||||||||| | || |||||||||||||| ||||| ||||| || || |||||||||| Sbjct: 330 ccgagaagccacctgctcccaaggcgcaggcagtgggttggccaccagttcggtcgttcc 389 Query: 496 ggaggaacat 505 | |||||||| Sbjct: 390 gcaggaacat 399
>ref|XM_469685.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1379 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||| ||||||||||| || ||||||||||||||||||||| Sbjct: 555 gtgaaggtcagcatggacggggcaccctacctgcgcaaggtggac 599 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 436 ccgagaagccgcgcgcgcccaaggcgcaggcggtggggtggccgccggtgcggtcgttcc 495 |||||||||| | || |||||||||||||| ||||| ||||| || || |||||||||| Sbjct: 385 ccgagaagccacctgctcccaaggcgcaggcagtgggttggccaccagttcggtcgttcc 444 Query: 496 ggaggaacat 505 | |||||||| Sbjct: 445 gcaggaacat 454
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete sequence Length = 163972 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||| ||||||||||| || ||||||||||||||||||||| Sbjct: 34709 gtgaaggtcagcatggacggggcaccctacctgcgcaaggtggac 34753 Score = 48.1 bits (24), Expect = 0.032 Identities = 42/48 (87%) Strand = Plus / Plus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacat 505 ||||||||| ||||| ||||| || || ||||||||||| |||||||| Sbjct: 34561 ggcgcaggcagtgggttggccaccagttcggtcgttccgcaggaacat 34608
>emb|AJ563599.2|OSA563599 Oryza sativa (indica cultivar-group) iaa1 gene for Aux/IAA protein, exons 1-5 Length = 4539 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||| ||||||||||| || ||||||||||||||||||||| Sbjct: 3634 gtgaaggtcagcatggacggggcaccctacctgcgcaaggtggac 3678 Score = 48.1 bits (24), Expect = 0.032 Identities = 42/48 (87%) Strand = Plus / Plus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacat 505 ||||||||| ||||| ||||| || || ||||||||||| |||||||| Sbjct: 3486 ggcgcaggcagtgggttggccaccagttcggtcgttccgcaggaacat 3533
>emb|AJ251791.1|OSA251791 Oryza sativa partial mRNA for putative IAA1 protein (iaa1 gene) Length = 1068 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||| ||||||||||| || ||||||||||||||||||||| Sbjct: 552 gtgaaggtcagcatggacggggcaccctacctgcgcaaggtggac 596 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 436 ccgagaagccgcgcgcgcccaaggcgcaggcggtggggtggccgccggtgcggtcgttcc 495 |||||||||| | || |||||||||||||| ||||| ||||| || || |||||||||| Sbjct: 382 ccgagaagccacctgctcccaaggcgcaggcagtgggttggccaccagttcggtcgttcc 441 Query: 496 ggaggaacat 505 | |||||||| Sbjct: 442 gcaggaacat 451
>dbj|AK102769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107G01, full insert sequence Length = 3241 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||| ||||||||||| || ||||||||||||||||||||| Sbjct: 2763 gtgaaggtcagcatggacggggcaccctacctgcgcaaggtggac 2719 Score = 48.1 bits (24), Expect = 0.032 Identities = 42/48 (87%) Strand = Plus / Minus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacat 505 ||||||||| ||||| ||||| || || ||||||||||| |||||||| Sbjct: 2911 ggcgcaggcagtgggttggccaccagttcggtcgttccgcaggaacat 2864
>dbj|AK100790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121A20, full insert sequence Length = 1092 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||| ||||||||||| || ||||||||||||||||||||| Sbjct: 561 gtgaaggtcagcatggacggggcaccctacctgcgcaaggtggac 605 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 436 ccgagaagccgcgcgcgcccaaggcgcaggcggtggggtggccgccggtgcggtcgttcc 495 |||||||||| | || |||||||||||||| ||||| ||||| || || |||||||||| Sbjct: 391 ccgagaagccacctgctcccaaggcgcaggcagtgggttggccaccagttcggtcgttcc 450 Query: 496 ggaggaacat 505 | |||||||| Sbjct: 451 gcaggaacat 460
>dbj|AK059838.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C11, full insert sequence Length = 1180 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||| ||||||||||| || ||||||||||||||||||||| Sbjct: 557 gtgaaggtcagcatggacggggcaccctacctgcgcaaggtggac 601 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 436 ccgagaagccgcgcgcgcccaaggcgcaggcggtggggtggccgccggtgcggtcgttcc 495 |||||||||| | || |||||||||||||| ||||| ||||| || || |||||||||| Sbjct: 387 ccgagaagccacctgctcccaaggcgcaggcagtgggttggccaccagttcggtcgttcc 446 Query: 496 ggaggaacat 505 | |||||||| Sbjct: 447 gcaggaacat 456
>ref|NM_189655.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 717 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 468 gtggggtggccgccggtgcggtcgttccggaggaac 503 |||||||||||||||||||||||||||||| ||||| Sbjct: 214 gtggggtggccgccggtgcggtcgttccggcggaac 249
>emb|AJ843999.1| Plantago major mRNA for auxin resistance protein (axr2 gene) Length = 1195 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 511 cggcggcgctggtgaaggtgagcatggacggcgcgccctacctgcgcaaggt 562 |||||||| | ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 476 cggcggcgtttgtgaaggtgagcatggacggcgcaccgtaccttcgcaaggt 527
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 468 gtggggtggccgccggtgcggtcgttccggaggaac 503 |||||||||||||||||||||||||||||| ||||| Sbjct: 61411 gtggggtggccgccggtgcggtcgttccggcggaac 61446
>dbj|AK100314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078N13, full insert sequence Length = 1795 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 468 gtggggtggccgccggtgcggtcgttccggaggaac 503 |||||||||||||||||||||||||||||| ||||| Sbjct: 846 gtggggtggccgccggtgcggtcgttccggcggaac 881
>ref|NM_188458.1| Oryza sativa (japonica cultivar-group), Ozsa8153 predicted mRNA Length = 966 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 468 gtggggtggccgccggtgcggtcgttccgg 497 |||||||||||||||||||||||||||||| Sbjct: 520 gtggggtggccgccggtgcggtcgttccgg 549
>ref|XM_468971.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1095 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 517 cgctggtgaaggtgagcatggacggcgcgccctacctg 554 ||||||||||||||||||||||||| ||||| |||||| Sbjct: 515 cgctggtgaaggtgagcatggacggggcgccgtacctg 552
>gb|BT017977.1| Zea mays clone EL01N0525A01.c mRNA sequence Length = 885 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggaca 567 ||||||||||||||||| |||||||||||||| | |||||||||| Sbjct: 290 gtgaaggtgagcatggatggcgcgccctacctcaggaaggtggaca 335
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 60.0 bits (30), Expect = 8e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 468 gtggggtggccgccggtgcggtcgttccgg 497 |||||||||||||||||||||||||||||| Sbjct: 140185 gtggggtggccgccggtgcggtcgttccgg 140214
>dbj|AK073044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001E11, full insert sequence Length = 1097 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 517 cgctggtgaaggtgagcatggacggcgcgccctacctg 554 ||||||||||||||||||||||||| ||||| |||||| Sbjct: 517 cgctggtgaaggtgagcatggacggggcgccgtacctg 554
>ref|XM_476071.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 732 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 471 gggtggccgccggtgcggtcgttccggaggaac 503 ||||||||||||||||||||||||||| ||||| Sbjct: 223 gggtggccgccggtgcggtcgttccggcggaac 255
>ref|NM_185060.1| Oryza sativa (japonica cultivar-group), mRNA Length = 588 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggt 562 |||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 331 gtgaaggtgagcatggacggggcgccatacctccgcaaggt 371 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 461 gcaggcggtggggtggccgccggtgcggtcgttccggagga 501 ||||| ||||||||||||||||||| |||||| | |||||| Sbjct: 189 gcaggtggtggggtggccgccggtggggtcgtacaggagga 229
>gb|DQ442404.1| Striga asiatica clone StIAA-2 auxin-regulated protein mRNA, complete cds Length = 1126 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggt 562 |||||||||||||||||||| ||||| |||||||| ||||| Sbjct: 397 gtgaaggtgagcatggacggggcgccgtacctgcggaaggt 437 Score = 46.1 bits (23), Expect = 0.12 Identities = 32/35 (91%) Strand = Plus / Plus Query: 456 aaggcgcaggcggtggggtggccgccggtgcggtc 490 |||||||||| |||||| |||||||||||| |||| Sbjct: 271 aaggcgcaggtggtgggctggccgccggtgaggtc 305
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggt 562 |||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 47262 gtgaaggtgagcatggacggggcgccatacctccgcaaggt 47302 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 461 gcaggcggtggggtggccgccggtgcggtcgttccggagga 501 ||||| ||||||||||||||||||| |||||| | |||||| Sbjct: 47120 gcaggtggtggggtggccgccggtggggtcgtacaggagga 47160
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 518 gctggtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||| |||||| | ||||||||||||| |||||||||||||||||| Sbjct: 23118776 gctggtcaaggtggccgtggacggcgcgccgtacctgcgcaaggtggac 23118824 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Plus Query: 458 ggcgcaggcggtggggtggccgccggtg 485 ||||| |||||||||||||||||||||| Sbjct: 23118701 ggcgcgggcggtggggtggccgccggtg 23118728
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 471 gggtggccgccggtgcggtcgttccggaggaac 503 ||||||||||||||||||||||||||| ||||| Sbjct: 5274068 gggtggccgccggtgcggtcgttccggcggaac 5274100 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 537 gacggcgcgccctacctgcgcaaggtggac 566 ||||||||||| |||||||||||||||||| Sbjct: 4624886 gacggcgcgccgtacctgcgcaaggtggac 4624857 Score = 44.1 bits (22), Expect = 0.49 Identities = 40/46 (86%) Strand = Plus / Minus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaac 503 ||||| || ||| ||||||||||||||||| ||||||||| |||| Sbjct: 4624992 ggcgcgggtggtcgggtggccgccggtgcgcgcgttccggaagaac 4624947
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 518 gctggtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||| |||||| | ||||||||||||| |||||||||||||||||| Sbjct: 69424 gctggtcaaggtggccgtggacggcgcgccgtacctgcgcaaggtggac 69472 Score = 48.1 bits (24), Expect = 0.032 Identities = 27/28 (96%) Strand = Plus / Plus Query: 458 ggcgcaggcggtggggtggccgccggtg 485 ||||| |||||||||||||||||||||| Sbjct: 69349 ggcgcgggcggtggggtggccgccggtg 69376
>dbj|AK111403.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E05, full insert sequence Length = 1493 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 471 gggtggccgccggtgcggtcgttccggaggaac 503 ||||||||||||||||||||||||||| ||||| Sbjct: 466 gggtggccgccggtgcggtcgttccggcggaac 498
>dbj|AK069376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012K19, full insert sequence Length = 1230 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 518 gctggtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||| |||||| | ||||||||||||| |||||||||||||||||| Sbjct: 372 gctggtcaaggtggccgtggacggcgcgccgtacctgcgcaaggtggac 420 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 456 aaggcgcaggcggtggggtggccgccggtg 485 ||||||| |||||||||||||||| ||||| Sbjct: 295 aaggcgcgggcggtggggtggccgacggtg 324
>dbj|AK061037.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B07, full insert sequence Length = 1241 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 518 gctggtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||| |||||| | ||||||||||||| |||||||||||||||||| Sbjct: 371 gctggtcaaggtggccgtggacggcgcgccgtacctgcgcaaggtggac 419 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 456 aaggcgcaggcggtggggtggccgccggtg 485 ||||||| |||||||||||||||||||||| Sbjct: 294 aaggcgcgggcggtggggtggccgccggtg 323
>dbj|AK059619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G11, full insert sequence Length = 1128 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggt 562 |||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 396 gtgaaggtgagcatggacggggcgccatacctccgcaaggt 436 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 461 gcaggcggtggggtggccgccggtgcggtcgttccggagga 501 ||||| ||||||||||||||||||| |||||| | |||||| Sbjct: 254 gcaggtggtggggtggccgccggtggggtcgtacaggagga 294
>gb|AY108311.1| Zea mays PCO113729 mRNA sequence Length = 1202 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||||||||||||||| ||||| ||||| || ||||||||| Sbjct: 439 gtgaaggtgagcatggacggggcgccatacctccggaaggtggac 483 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 454 ccaaggcgcaggcggtggggtggccgccggtg 485 |||||| ||||| ||||||||||||||||||| Sbjct: 320 ccaaggtgcaggtggtggggtggccgccggtg 351
>gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1097_A12, complete sequence Length = 88725 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 471 gggtggccgccggtgcggtcgttccggaggaac 503 ||||||||||||||||||||||||||| ||||| Sbjct: 10769 gggtggccgccggtgcggtcgttccggcggaac 10801
>dbj|AK100080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001M24, full insert sequence Length = 1204 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 453 cccaaggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaac 503 |||||||||| || ||| ||||||||||||||||| ||||||||| |||| Sbjct: 358 cccaaggcgcgggtggtcgggtggccgccggtgcgcgcgttccggaagaac 408 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 537 gacggcgcgccctacctgcgcaaggtggac 566 ||||||||||| |||||||||||||||||| Sbjct: 469 gacggcgcgccgtacctgcgcaaggtggac 498
>dbj|AK073361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027E22, full insert sequence Length = 1165 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 454 ccaaggcgcaggcggtggggtggccgccggtgcggtcgt 492 |||||||||||| |||||| |||||||||||| |||||| Sbjct: 274 ccaaggcgcaggtggtgggatggccgccggtgaggtcgt 312 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctg 554 |||||||||||||||||||| || || |||||| Sbjct: 429 gtgaaggtgagcatggacggagctccatacctg 461
>dbj|AK061796.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G05, full insert sequence Length = 1201 Score = 54.0 bits (27), Expect = 5e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 453 cccaaggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaac 503 |||||||||| || ||| ||||||||||||||||| ||||||||| |||| Sbjct: 355 cccaaggcgcgggtggtcgggtggccgccggtgcgcgcgttccggaagaac 405 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 537 gacggcgcgccctacctgcgcaaggtggac 566 ||||||||||| |||||||||||||||||| Sbjct: 466 gacggcgcgccgtacctgcgcaaggtggac 495
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02, complete sequence Length = 156649 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 537 gacggcgcgccctacctgcgcaaggtggac 566 ||||||||||| |||||||||||||||||| Sbjct: 135353 gacggcgcgccgtacctgcgcaaggtggac 135324 Score = 44.1 bits (22), Expect = 0.49 Identities = 40/46 (86%) Strand = Plus / Minus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaac 503 ||||| || ||| ||||||||||||||||| ||||||||| |||| Sbjct: 135459 ggcgcgggtggtcgggtggccgccggtgcgcgcgttccggaagaac 135414
>gb|AY104734.1| Zea mays PCO138559 mRNA sequence Length = 1116 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 537 gacggcgcgccctacctgcgcaaggtggac 566 |||||||||||||||||||| ||||||||| Sbjct: 426 gacggcgcgccctacctgcggaaggtggac 455
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||||||||||||||| |||| |||||| | ||||||||| Sbjct: 20341450 gtgaaggtgagcatggacgggacgccgtacctgaggaaggtggac 20341406
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||||||||||||||| |||| |||||| | ||||||||| Sbjct: 120577 gtgaaggtgagcatggacgggacgccgtacctgaggaaggtggac 120533
>dbj|AK111128.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C09, full insert sequence Length = 956 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 522 gtgaaggtgagcatggacggcgcgccctacctgcgcaaggtggac 566 |||||||||||||||||||| |||| |||||| | ||||||||| Sbjct: 204 gtgaaggtgagcatggacgggacgccgtacctgaggaaggtggac 248
>dbj|AP006680.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45D03, TM0375a, complete sequence Length = 58157 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 458 ggcgcaggcggtggggtggccgccggtgcggtcgttccggaggaacatg 506 |||||| | |||||| ||||| || |||||||||||||||| ||||||| Sbjct: 899 ggcgcaagtggtgggttggccacctgtgcggtcgttccggaagaacatg 851
>gb|AY107725.1| Zea mays PCO106440 mRNA sequence Length = 1176 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 528 gtgagcatggacggcgcgccctacctgcgcaaggtggac 566 ||||||||||||||||| || |||||| | ||||||||| Sbjct: 539 gtgagcatggacggcgccccgtacctgaggaaggtggac 577 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Plus Query: 454 ccaaggcgcaggcggtggggtggccgccggtgcggtcgttccgga 498 ||||||||| | |||||| |||||||||||| |||||| ||||| Sbjct: 342 ccaaggcgcccgtggtgggttggccgccggtgaggtcgtaccgga 386
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 292 cggcggccgcgccgccgtccga 313 |||||||||||||||||||||| Sbjct: 1889967 cggcggccgcgccgccgtccga 1889988
>gb|AE009113.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 139 of 256 of the complete sequence Length = 11557 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 501 aacatgctggcggcggcgctgg 522 |||||||||||||||||||||| Sbjct: 2770 aacatgctggcggcggcgctgg 2749
>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02, complete sequence Length = 167988 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 gcgtcggcggccgcgccgccgt 309 |||||||||||||||||||||| Sbjct: 156170 gcgtcggcggccgcgccgccgt 156149
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 501 aacatgctggcggcggcgctgg 522 |||||||||||||||||||||| Sbjct: 1536601 aacatgctggcggcggcgctgg 1536580
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 gcgtcggcggccgcgccgccgt 309 |||||||||||||||||||||| Sbjct: 23438849 gcgtcggcggccgcgccgccgt 23438828
>dbj|AK071065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080M03, full insert sequence Length = 1779 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 gcgtcggcggccgcgccgccgt 309 |||||||||||||||||||||| Sbjct: 164 gcgtcggcggccgcgccgccgt 143
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 cggcggccgcgccgccgtccg 312 ||||||||||||||||||||| Sbjct: 2441561 cggcggccgcgccgccgtccg 2441541
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 503 catgctggcggcggcgctggt 523 ||||||||||||||||||||| Sbjct: 2159261 catgctggcggcggcgctggt 2159281
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 cggcggccgcgccgccgtccg 312 ||||||||||||||||||||| Sbjct: 621548 cggcggccgcgccgccgtccg 621528
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 gccgacggtgccgcggaggcgcagc 354 ||||||||||||||| ||||||||| Sbjct: 4050208 gccgacggtgccgcgcaggcgcagc 4050184 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 gaccgagctgcggctcggcctgcc 196 ||||||||| |||||||||||||| Sbjct: 3396216 gaccgagctacggctcggcctgcc 3396193
>gb|DQ070872.1| Mirabilis jalapa Aux/IAA5 mRNA, partial cds Length = 193 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ggcggtggggtggccgccggt 484 ||||||||||||||||||||| Sbjct: 165 ggcggtggggtggccgccggt 185
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 gcgtcggcggccgcgccgccg 308 ||||||||||||||||||||| Sbjct: 2210252 gcgtcggcggccgcgccgccg 2210272
>ref|XM_483328.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2369 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgtcggcggccgcgccgccg 308 |||||||||||||||||||| Sbjct: 487 cgtcggcggccgcgccgccg 506
>gb|AF139113.2| Starkeya novella sox gene cluster, partial sequence Length = 10003 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 catgctggcggcggcgctgg 522 |||||||||||||||||||| Sbjct: 7388 catgctggcggcggcgctgg 7369
>gb|DQ356948.1| Crocodilepox virus, complete genome Length = 190054 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgtcggcggccgcgccgccg 308 |||||||||||||||||||| Sbjct: 78929 cgtcggcggccgcgccgccg 78948
>emb|CR726228.2|CNS0GNAY Tetraodon nigroviridis full-length cDNA Length = 1038 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 gagaagccgcgcgcgcccaaggcg 461 ||||||| |||||||||||||||| Sbjct: 2 gagaagcagcgcgcgcccaaggcg 25
>ref|XM_502857.1| Yarrowia lipolytica CLIB122, YALI0D15356g predicted mRNA Length = 3297 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 aaaccccaagcagcagcaga 78 |||||||||||||||||||| Sbjct: 2562 aaaccccaagcagcagcaga 2581
>emb|AL035689.26|HS187J11 Human DNA sequence from clone RP1-187J11 on chromosome 6q11.1-22.33 Contains the 3' part of the gene for endoplasmic reticulum associated protein 140 kDa (ERAP140) (similar to nucleolar protein C7B), the gene for a novel protein similar to protein kinase C inhibitors, the gene for MDS024 protein and two putative CpG islands, complete sequence Length = 144364 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 agccatactcttttgtaacc 20 |||||||||||||||||||| Sbjct: 125954 agccatactcttttgtaacc 125935
>gb|AY129669.1| Mirabilis jalapa auxin-responsive protein IAA1 mRNA, partial cds Length = 990 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 ctggtgaaggtgagcatgga 538 |||||||||||||||||||| Sbjct: 232 ctggtgaaggtgagcatgga 251
>emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in linkage group 8, complete sequence Length = 170195 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 accgcgcagccggaagagga 433 |||||||||||||||||||| Sbjct: 118995 accgcgcagccggaagagga 119014
>gb|AE005950.1| Caulobacter crescentus CB15 section 276 of 359 of the complete genome Length = 12754 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gcgtcggcggccgcgccgcc 307 |||||||||||||||||||| Sbjct: 1549 gcgtcggcggccgcgccgcc 1568
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 Length = 1282697 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 cgagctgcggctcggcctgc 195 |||||||||||||||||||| Sbjct: 139424 cgagctgcggctcggcctgc 139443
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 cagcgtcggcggccgcgccg 305 |||||||||||||||||||| Sbjct: 2291197 cagcgtcggcggccgcgccg 2291216
>gb|AC004821.3| Homo sapiens chromosome 5 clone RP1-98O22, complete sequence Length = 163332 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccatcgacctcatgctgaag 278 |||||||||||||||||||| Sbjct: 27089 ccatcgacctcatgctgaag 27108
>ref|XM_939144.1| PREDICTED: Homo sapiens similar to CG1550-PA (LOC650058), mRNA Length = 198 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccatcgacctcatgctgaag 278 |||||||||||||||||||| Sbjct: 8 ccatcgacctcatgctgaag 27
>ref|XM_928636.1| PREDICTED: Homo sapiens similar to CG1550-PA (LOC645623), mRNA Length = 198 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccatcgacctcatgctgaag 278 |||||||||||||||||||| Sbjct: 8 ccatcgacctcatgctgaag 27
>ref|XM_943134.1| PREDICTED: Homo sapiens hypothetical protein LOC647942 (LOC647942), mRNA Length = 810 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 ccccgagaagccgcgcgcgc 453 |||||||||||||||||||| Sbjct: 484 ccccgagaagccgcgcgcgc 503
>gb|DQ384280.1| Mastigamoeba balamuthi hydrolase-like protein mRNA, partial cds Length = 420 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 196 caggcggcggcaacgaggctgagg 219 ||||||||||| |||||||||||| Sbjct: 335 caggcggcggcgacgaggctgagg 312
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgtcggcggccgcgccgccg 308 |||||||||||||||||||| Sbjct: 25491476 cgtcggcggccgcgccgccg 25491495
>gb|AC010900.12| Homo sapiens BAC clone RP11-544H14 from 2, complete sequence Length = 208024 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 ccccgagaagccgcgcgcgc 453 |||||||||||||||||||| Sbjct: 64084 ccccgagaagccgcgcgcgc 64103
>gb|AC113403.4| Homo sapiens chromosome 5 clone RP11-461O14, complete sequence Length = 167159 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ccatcgacctcatgctgaag 278 |||||||||||||||||||| Sbjct: 84213 ccatcgacctcatgctgaag 84194
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgtcggcggccgcgccgccg 308 |||||||||||||||||||| Sbjct: 2052168 cgtcggcggccgcgccgccg 2052187
>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0711H09 Length = 185858 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgtcggcggccgcgccgccg 308 |||||||||||||||||||| Sbjct: 122792 cgtcggcggccgcgccgccg 122811
>dbj|AK109868.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-A07, full insert sequence Length = 2369 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgtcggcggccgcgccgccg 308 |||||||||||||||||||| Sbjct: 487 cgtcggcggccgcgccgccg 506
>gb|AC007277.2|AC007277 Homo sapiens BAC clone RP11-244E6 from 2, complete sequence Length = 180221 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tgtaaccatcctcccgtcta 33 |||||||||||||||||||| Sbjct: 39590 tgtaaccatcctcccgtcta 39571
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 gagctgcggctcggcctgcc 196 |||||||||||||||||||| Sbjct: 2848287 gagctgcggctcggcctgcc 2848268
>dbj|AB097116.1| Brassica rapa SRK-60, SLG-60 genes for S receptor kinase, S-locus glycoprotein, partial cds Length = 86379 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 atactcttttgtaaccatcc 24 |||||||||||||||||||| Sbjct: 41016 atactcttttgtaaccatcc 40997
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 ggtggccgccggtgcggtcg 491 |||||||||||||||||||| Sbjct: 2100825 ggtggccgccggtgcggtcg 2100806
>emb|BX005467.6| Mouse DNA sequence from clone RP23-74L11 on chromosome X, complete sequence Length = 233590 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 acctcatgctgaagctggag 284 |||||||||||||||||||| Sbjct: 155549 acctcatgctgaagctggag 155530
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 aaaccccaagcagcagcaga 78 |||||||||||||||||||| Sbjct: 1879111 aaaccccaagcagcagcaga 1879130
>dbj|AP006398.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT29J15, TM0280b, complete sequence Length = 68747 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 gtgaaggtgagcatggacgg 541 |||||||||||||||||||| Sbjct: 4929 gtgaaggtgagcatggacgg 4910 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,439,013 Number of Sequences: 3902068 Number of extensions: 4439013 Number of successful extensions: 99267 Number of sequences better than 10.0: 114 Number of HSP's better than 10.0 without gapping: 118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95534 Number of HSP's gapped (non-prelim): 3725 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
