ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart19g01 |
|---|---|
| Clone Library Name | barley_pub |
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 34.3 bits (77), Expect = 0.24 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 15/142 (10%) Frame = +3 Query: 174 TRERKLNPDLQEQLAKPYLARAMAAVDPSH--------PEGSKGRDTKGMSVLQQH-AAF 326 +RE +P L L P LA+ + + S +GS S + H + Sbjct: 786 SREANSSPGLGTPLKSPSLAKKDSLLSESELSQYFVHDGQGSLSDFVVAGSEDEDHPGSG 845 Query: 327 FDRNGDGVIYPWETFQSLRAIGLGSPSAFGTSILLHLVLTY------PTQPGWMPSPLLS 488 ++ + DG + P + RA L + + TS LLH +T P P + +PLL Sbjct: 846 YETSEDGSLLPVPSAHKARANSLVTLGSQRTSGLLHKQVTVARQASLPGSPQVLRNPLLR 905 Query: 489 VHIKNIHRGKHGSDSETYDTEG 554 + GSD E +D EG Sbjct: 906 QRRVRCYDSNGGSDDEDFDGEG 927
>GLGB2_STRCO (Q59832) 1,4-alpha-glucan branching enzyme 2 (EC 2.4.1.18)| (Glycogen branching enzyme 2) (BE 2) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2) Length = 741 Score = 32.0 bits (71), Expect = 1.2 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 10/51 (19%) Frame = +2 Query: 401 PFSLRNIHTPPPRPHLSYSTGVDAFPS----------AFSPYKEHPQGQAW 523 PFS+ +H P RP L+Y + P+ P EHP G +W Sbjct: 264 PFSVYEVHLPSWRPGLTYRELAEELPAYVKDLGFTHVELMPVAEHPYGPSW 314
>NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does| not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) Length = 925 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Frame = +3 Query: 402 PSAFGTSILLHLVLTYPTQPGWMPSPLLSV-HIKNIHRGKHGSDSETYDTE 551 PS +S+L+ L L+Y GW+P ++S+ H+K+++ G + S S+ T+ Sbjct: 448 PSFPPSSLLISLDLSYNDLSGWLPESIISLPHLKSLYFGCNPSMSDEDTTK 498
>ZPI_PONPY (Q5RDA8) Protein Z-dependent protease inhibitor precursor| (PZ-dependent protease inhibitor) (PZI) (Serpin A10) Length = 443 Score = 32.0 bits (71), Expect = 1.2 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Frame = +3 Query: 150 TEAPQAAVTR----ERKLNPDLQEQLAKPYLARAMAAVDPSHPEGSKGRDTKGMSVLQQH 317 T APQ +R R+ D QE + A + S + +K G S+L++ Sbjct: 31 TPAPQNQTSRVVQAPREEEEDEQEASEEKAGDEEKAWLTASRQQLAKETSNFGFSLLRKI 90 Query: 318 AAFFDRNGDGVIYPWETFQSLRAIGLGSPSAFGTSIL--LHLVLTYPTQPGWMPS 476 + D G+ V P+ T ++ + LG+ T I LHL PT+PG +PS Sbjct: 91 SMRHD--GNIVFSPFGTSLAMTGLMLGATGLTETQIKRGLHLQALNPTKPGLLPS 143
>PATR_CORJK (Q4JSJ5) Putative phenylalanine aminotransferase (EC 2.6.1.-)| Length = 373 Score = 31.6 bits (70), Expect = 1.6 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 7/122 (5%) Frame = +3 Query: 72 FLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPYLARAMAAV 251 ++P S +PG+ ++ A+ SS P + A T PD+ + LA+ + V Sbjct: 12 YVPGSTQPGALKL-ASNESSLSPLPSVSAVINDATSNLNRYPDMASGALRGKLAQWLG-V 69 Query: 252 DPSHPEGSKGRDTKGMSVLQQHAAFFDRNGDGVIYPWETFQS-------LRAIGLGSPSA 410 D + G ++ QQ ++GD V+Y W +F++ A+G+G P Sbjct: 70 DLDNVAVGNGSS----ALCQQLVQATCKDGDEVVYAWRSFEAYPILCKIAGAVGVGVPLK 125 Query: 411 FG 416 G Sbjct: 126 SG 127
>YIN0_YEAST (P40467) Putative 108.8 kDa transcriptional regulatory protein in| FKH1-STH1 intergenic region Length = 964 Score = 31.2 bits (69), Expect = 2.1 Identities = 22/84 (26%), Positives = 38/84 (45%) Frame = +3 Query: 81 RSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPYLARAMAAVDPS 260 R+ G+S V + +T PS +T AA + L+ E+ P + A+ +PS Sbjct: 55 RTQNSGNSGVLTLGNVTTGPSSSTVVAAAASNPNKLLSNIKTERAILPGASTIPASNNPS 114 Query: 261 HPEGSKGRDTKGMSVLQQHAAFFD 332 P K + T+ S + ++ FD Sbjct: 115 KPRKYKTKSTRLQSKIDRYKQIFD 138
>GLGB1_STRAW (Q82JF0) 1,4-alpha-glucan branching enzyme 1 (EC 2.4.1.18)| (Glycogen branching enzyme 1) (BE 1) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1) Length = 838 Score = 31.2 bits (69), Expect = 2.1 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 21/68 (30%) Frame = +2 Query: 383 SDRAWV-----------PFSLRNIHTPPPRPHLSYSTGVDAFPSAFS----------PYK 499 +D AW+ PFS+ +H P RP L+Y + P+ + P Sbjct: 339 ADEAWMAARGERPVHESPFSVYEVHLPSWRPGLTYRQLAEQLPAYVADLGFTHVELLPVA 398 Query: 500 EHPQGQAW 523 EHP G +W Sbjct: 399 EHPFGGSW 406
>HEM3_MYCTU (P64336) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 309 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = +3 Query: 69 GFLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPY--LARAM 242 G L CR G SR+ A ++ D +AAVT ER L DL+ + P +A + Sbjct: 191 GALAVECRAGDSRLVAVLAELDDADT-----RAAVTAERALLADLEAGCSAPVGAIAEVV 245 Query: 243 AAVD 254 ++D Sbjct: 246 ESID 249
>HEM3_MYCBO (P64337) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 309 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = +3 Query: 69 GFLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPY--LARAM 242 G L CR G SR+ A ++ D +AAVT ER L DL+ + P +A + Sbjct: 191 GALAVECRAGDSRLVAVLAELDDADT-----RAAVTAERALLADLEAGCSAPVGAIAEVV 245 Query: 243 AAVD 254 ++D Sbjct: 246 ESID 249
>GLGB2_STRAW (Q825Q8) 1,4-alpha-glucan branching enzyme 2 (EC 2.4.1.18)| (Glycogen branching enzyme 2) (BE 2) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2) Length = 592 Score = 30.8 bits (68), Expect = 2.7 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 10/51 (19%) Frame = +2 Query: 401 PFSLRNIHTPPPRPHLSYSTGVDAFPSAFS----------PYKEHPQGQAW 523 PFS+ +H P RP L+Y + P+ + P EHP G +W Sbjct: 117 PFSVYEVHLPSWRPGLTYRQLAEQLPAYVADLGFTHVELLPVAEHPFGGSW 167
>IAA4_ORYSA (Q59AF4) Auxin-responsive protein IAA4 (Indoleacetic acid-induced| protein 4) Length = 203 Score = 30.4 bits (67), Expect = 3.5 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%) Frame = +3 Query: 87 CRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKP--------YLARAM 242 C+ G +++M SST P+L+T + +A T R L+ DL+ L+ A A Sbjct: 4 CKGGGMSPSSSMDSSTHPALSTTS--SAATARRDLSTDLRLGLSLSTSSSSSLLQAAAAA 61 Query: 243 AAVDPSHP 266 AA D S P Sbjct: 62 AAADDSIP 69
>NRFA_ECOLI (P0ABK9) Cytochrome c-552 precursor (EC 1.7.2.2) (Ammonia-forming| cytochrome c nitrite reductase) (Cytochrome c nitrite reductase) Length = 478 Score = 30.4 bits (67), Expect = 3.5 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +3 Query: 213 LAKPYLARAMAAVDPSHPEGSKGR-DTKGMSVLQQHAA-FFDRNGDGVIYPWE 365 L++PY ARAM A+ P GR D + M Q H +FD V +PW+ Sbjct: 180 LSRPYAARAMEAI--GKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWD 230
>NRFA_ECO57 (P0ABL0) Cytochrome c-552 precursor (EC 1.7.2.2) (Ammonia-forming| cytochrome c nitrite reductase) (Cytochrome c nitrite reductase) Length = 478 Score = 30.4 bits (67), Expect = 3.5 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +3 Query: 213 LAKPYLARAMAAVDPSHPEGSKGR-DTKGMSVLQQHAA-FFDRNGDGVIYPWE 365 L++PY ARAM A+ P GR D + M Q H +FD V +PW+ Sbjct: 180 LSRPYAARAMEAI--GKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWD 230
>AROQ1_AGRT5 (Q8UFR5) 3-dehydroquinate dehydratase 1 (EC 4.2.1.10)| (3-dehydroquinase 1) (Type II DHQase 1) Length = 145 Score = 30.0 bits (66), Expect = 4.6 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +3 Query: 324 FFDRNGDGVIYPWETFQSLRAIGLG-SPSAFG-TSILLHLVLTYPTQPGWMPSPLLSVHI 497 F N +GV+ W RA G+ +P A+ TSI LH + + +P++ VHI Sbjct: 49 FRQSNHEGVLVDWLHEAGERAAGVVINPGAYSHTSIALHDAIRA------ISTPVVEVHI 102 Query: 498 KNIH 509 NIH Sbjct: 103 SNIH 106
>RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing homolog| (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes) Length = 196 Score = 30.0 bits (66), Expect = 4.6 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = +2 Query: 377 PASDRAWVPFSLRNIHTPPPRPHLSYSTGVDAFPSAFSPYKEHPQGQAWER 529 PAS AW P+ L P PH +++ A + + + +P +A ++ Sbjct: 138 PASPEAWAPYPLYTAELAPAIPHAAFTYPAAAAAALHAQMRWYPPSEATQQ 188
>POLR_ELV (P35928) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1748 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Frame = +3 Query: 45 PTLRSRHLGFLPRSC-RPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAK 221 P L H FLP SC +P +S AA P+ P V + L Q Q A+ Sbjct: 551 PLLLDSHSSFLPSSCLQPPASPSIAAAPHPLPPAQKPPRPPTTVPTPKPLASPSQTQAAQ 610 Query: 222 P 224 P Sbjct: 611 P 611
>RECF_SYNJB (Q2JIB8) DNA replication and repair protein recF| Length = 380 Score = 29.6 bits (65), Expect = 6.0 Identities = 13/52 (25%), Positives = 23/52 (44%) Frame = +2 Query: 8 SAARTTTSYRVAPHPALPSPRLSPKILQTRLVSSNRRHVVVDRSVAGDRGAP 163 S R T + P LP P+ SP+++Q + ++ R + S+ P Sbjct: 216 SGGRETLTLTYRPQVPLPDPQASPEVIQAQFLAEIRAKAAAEHSLGSSLVGP 267
>LATS2_MOUSE (Q7TSJ6) Serine/threonine-protein kinase LATS2 (EC 2.7.11.1) (Large| tumor suppressor homolog 2) (Serine/threonine-protein kinase kpm) (Kinase phosphorylated during mitosis protein) Length = 1042 Score = 29.6 bits (65), Expect = 6.0 Identities = 19/59 (32%), Positives = 26/59 (44%) Frame = +3 Query: 90 RPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLNPDLQEQLAKPYLARAMAAVDPSHP 266 R G SR + + +PSL AVT L+P ++ +P AV PSHP Sbjct: 378 RAGPSRTNSFNNPQPEPSLPAPNTVTAVTAAHILHPVKSVRVLRP---EPQTAVGPSHP 433
>GLMS_RALSO (Q8Y303) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 611 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +3 Query: 342 DGVIYPWETF-QSLRAIGLGSPSAFGTSILLHLVLTYPTQPGWMPSPLLSVHIKNIHRGK 518 +G+I +ET + L+A+G G S T ++ HL+ T P L ++ + + Sbjct: 98 NGIIENYETLREELKAVGYGFESQTDTEVVAHLIHQAYTYPSSATRGHLFASVRAVVKRL 157 Query: 519 HGS 527 HG+ Sbjct: 158 HGA 160
>RECF_SYNJA (Q2JQG8) DNA replication and repair protein recF| Length = 380 Score = 29.3 bits (64), Expect = 7.9 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = +2 Query: 8 SAARTTTSYRVAPHPALPSPRLSPKILQTRLVSSNRRHVVVDRSV 142 S R T S P LP P+ PK++Q + +++ R ++++ Sbjct: 216 SGGRETLSLTYRPQVPLPDPQADPKVVQAQFLAAIRAKAAAEQAL 260
>GPC5_MOUSE (Q8CAL5) Glypican-5 precursor| Length = 572 Score = 29.3 bits (64), Expect = 7.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +3 Query: 465 WMPSPLLSVHIKNIHRGKHGSDSETYDT 548 WMP + +K +HR HGS +T T Sbjct: 521 WMPDSMNFSDVKQVHRADHGSTLDTTST 548
>Y2829_VIBVU (Q8D8Y6) Putative reductase VV1_2829 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 7.9 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -2 Query: 547 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 458 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y2423_PHOPR (Q6LPG9) Putative reductase PBPRA2423 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 7.9 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -2 Query: 547 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 458 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y1437_VIBVY (Q7MLJ0) Putative reductase VV1437 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 7.9 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -2 Query: 547 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 458 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y1231_VIBPA (Q87QB9) Putative reductase VP1231 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 7.9 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = -2 Query: 547 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 458 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 29.3 bits (64), Expect = 7.9 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 6/52 (11%) Frame = +3 Query: 21 PPPAIAWLPTLRSRHLGFLPRSCRPGSSRVTAAM---SSSTD---PSLATEA 158 PPP W PT RS LP RPG+ A SSS+D P L E+ Sbjct: 1230 PPPTETWPPTARSSPPPPLPAEERPGTKGPETASKFPSSSSDWRVPGLGLES 1281
>ZPI_HUMAN (Q9UK55) Protein Z-dependent protease inhibitor precursor| (PZ-dependent protease inhibitor) (PZI) (Serpin A10) Length = 444 Score = 29.3 bits (64), Expect = 7.9 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%) Frame = +3 Query: 150 TEAPQAAVTR----ERKLNPDLQEQLAKPYLARAMAAVDPSHPEGSKGRDTKGMSVLQQH 317 T APQ +R ++ D QE + A + S + +K G S+L++ Sbjct: 31 TPAPQNQTSRVVQAPKEEEEDEQEASEEKASEEEKAWLMASRQQLAKETSNFGFSLLRKI 90 Query: 318 AAFFDRNGDGVIYPWETFQSLRAIGLGSPSAFGTSIL--LHLVLTYPTQPGWMPS 476 + D G+ V P+ ++ + LG+ T I LHL PT+PG +PS Sbjct: 91 SMRHD--GNMVFSPFGMSLAMTGLMLGATGPTETQIKRGLHLQALKPTKPGLLPS 143
>BHLH2_RAT (O35780) Class B basic helix-loop-helix protein 2 (bHLHB2)| (Enhancer-of-split and hairy-related protein 2) (SHARP-2) Length = 411 Score = 29.3 bits (64), Expect = 7.9 Identities = 23/85 (27%), Positives = 36/85 (42%) Frame = +3 Query: 15 LVPPPAIAWLPTLRSRHLGFLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLN 194 L+PP A A+LP L PG + AA+SS +P + P + +R + Sbjct: 327 LIPPSATAYLPMLEKCWYPTSVPLLYPGLNTSAAALSSFMNPD---KIPTPLLLPQRLPS 383 Query: 195 PDLQEQLAKPYLARAMAAVDPSHPE 269 P L L +A+ + P + E Sbjct: 384 PLAHSSLDSSALLQALKQIPPLNLE 408
>BHLH2_MOUSE (O35185) Class B basic helix-loop-helix protein 2 (bHLHB2)| (Stimulated with retinoic acid 13) (E47 interaction protein 1) (eipl) Length = 411 Score = 29.3 bits (64), Expect = 7.9 Identities = 23/85 (27%), Positives = 36/85 (42%) Frame = +3 Query: 15 LVPPPAIAWLPTLRSRHLGFLPRSCRPGSSRVTAAMSSSTDPSLATEAPQAAVTRERKLN 194 L+PP A A+LP L PG + AA+SS +P + P + +R + Sbjct: 327 LIPPSATAYLPMLEKCWYPTSVPVLYPGLNTSAAALSSFMNPD---KIPTPLLLPQRLPS 383 Query: 195 PDLQEQLAKPYLARAMAAVDPSHPE 269 P L L +A+ + P + E Sbjct: 384 PLAHSSLDSSALLQALKQIPPLNLE 408 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,819,213 Number of Sequences: 219361 Number of extensions: 1499688 Number of successful extensions: 6385 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 6052 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6380 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
