ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart19f03 |
|---|---|
| Clone Library Name | barley_pub |
>ELI5_HORVU (P14895) High molecular mass early light-inducible protein HV58,| chloroplast precursor (ELIP) Length = 231 Score = 145 bits (366), Expect = 7e-35 Identities = 92/187 (49%), Positives = 95/187 (50%), Gaps = 38/187 (20%) Frame = +1 Query: 100 MATMVALSSFAVVGLXXXXXXXXXXXXXTLVVRAQTE----------------------- 210 MATMVALSSFAVVG TLVVRAQTE Sbjct: 1 MATMVALSSFAVVGRSAARSPVVAPRRRTLVVRAQTEVSLHVARTITVSVFGCLPASTIT 60 Query: 211 --------------PDMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSVWD 348 PDMD NPSVWD Sbjct: 61 SRLDLTVNLFVYVQPDMDSAKETTSASTSPSPSQYTSPSPTTIPAAPKPVTKKANPSVWD 120 Query: 349 ALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQAGS-GAGLGWFLATAGVFSLAS 525 ALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQ G +GL WFLATAGVFS+AS Sbjct: 121 ALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVAS 180 Query: 526 LVPLLQG 546 L+PLLQG Sbjct: 181 LLPLLQG 187
>ELI6_HORVU (P14896) Low molecular mass early light-inducible protein HV60,| chloroplast precursor (ELIP) Length = 167 Score = 110 bits (276), Expect = 2e-24 Identities = 70/151 (46%), Positives = 79/151 (52%), Gaps = 2/151 (1%) Frame = +1 Query: 100 MATMVALSSFAVVGLXXXXXXXX--XXXXXTLVVRAQTEPDMDXXXXXXXXXXXXXXXXX 273 MATM+A+SSFA + TLVVRAQTE Sbjct: 1 MATMMAMSSFAGAAVLPRGSARSLPALGRRTLVVRAQTEGP------------------- 41 Query: 274 XXXXXXXXXXXXXXXXXXXNPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGL 453 + S+WDA+AFSGPAPERINGRLAMVGFV AL+VEA RG GL Sbjct: 42 ---------NAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGL 92 Query: 454 LDQAGSGAGLGWFLATAGVFSLASLVPLLQG 546 L Q GSG G WF T + S+ASLVPLLQG Sbjct: 93 LSQLGSGTGQAWFAYTVAMLSMASLVPLLQG 123
>ELI9_HORVU (P14897) Low molecular mass early light-inducible protein HV90,| chloroplast precursor (ELIP) Length = 172 Score = 107 bits (268), Expect = 2e-23 Identities = 52/70 (74%), Positives = 56/70 (80%) Frame = +1 Query: 337 SVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQAGSGAGLGWFLATAGVFS 516 S+WD +AFSGPAPERINGRLAMVGFV AL+VEA RG GLL Q GSG G WF T V S Sbjct: 59 SIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLS 118 Query: 517 LASLVPLLQG 546 +ASLVPLLQG Sbjct: 119 MASLVPLLQG 128
>ELI_PEA (P11432) Early light-induced protein, chloroplast precursor (ELIP)| Length = 196 Score = 89.7 bits (221), Expect = 5e-18 Identities = 44/67 (65%), Positives = 53/67 (79%) Frame = +1 Query: 346 DALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQAGSGAGLGWFLATAGVFSLAS 525 D +AFSGPAPERINGRLAM+GFVAA+ VE A+G GL +Q SG G+ WFL T+ + SLAS Sbjct: 89 DLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQL-SGGGVAWFLGTSVLLSLAS 147 Query: 526 LVPLLQG 546 L+P QG Sbjct: 148 LIPFFQG 154
>DS22_CRAPL (Q01931) Desiccation stress protein DSP-22, chloroplast precursor| Length = 199 Score = 68.9 bits (167), Expect = 9e-12 Identities = 35/67 (52%), Positives = 46/67 (68%) Frame = +1 Query: 346 DALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQAGSGAGLGWFLATAGVFSLAS 525 D +F G APERINGR AM+GFVAA+ VE A G + Q +G G+ WFL T+ V LA+ Sbjct: 90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNG-GVMWFLLTSAVLVLAT 148 Query: 526 LVPLLQG 546 L+P+ +G Sbjct: 149 LIPIYRG 155
>CBR_DUNBA (P27516) Carotene biosynthesis-related protein CBR, chloroplast| precursor Length = 172 Score = 55.5 bits (132), Expect = 1e-07 Identities = 34/67 (50%), Positives = 42/67 (62%) Frame = +1 Query: 334 PSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQAGSGAGLGWFLATAGVF 513 P+V + + FSG APE INGRLAM+GFVAAL E + G +L Q G L T +F Sbjct: 65 PTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTL--IALTFVLF 121 Query: 514 SLASLVP 534 S ASL+P Sbjct: 122 SAASLIP 128 Score = 30.4 bits (67), Expect = 3.4 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +1 Query: 346 DALAFSGPAPERINGRLAMVGFVAALSVEAARG 444 DA+ P E NGR AM+GF A L E +G Sbjct: 136 DAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 35.4 bits (80), Expect = 0.11 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = +3 Query: 150 RPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQ 311 RP GGP P ++ G D + G D R P P P P P P+P Q Sbjct: 736 RPPGGGGPRPPKTKKSGAD------APGSDARAPLPAPAPPSTP-PGPEPAPAQ 782
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 34.3 bits (77), Expect = 0.23 Identities = 20/44 (45%), Positives = 26/44 (59%) Frame = +1 Query: 337 SVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQAG 468 ++W+ SG E NGRLAM+GF+AAL E+ G G L G Sbjct: 6 NIWNWGFTSGA--ENWNGRLAMLGFIAALLTESLTGQGTLHFLG 47
>MOT8_MOUSE (O70324) Monocarboxylate transporter 8 (MCT 8) (X-linked| PEST-containing transporter) Length = 565 Score = 32.7 bits (73), Expect = 0.68 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = +3 Query: 171 PAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDP 299 P+PA +GP + +Q E V P+P PE EP P+P+P Sbjct: 4 PSPASEEAEGPCQE---ANQEYQEPVCSPVPEPEPEPEPEPEP 43
>CD2_RAT (P08921) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (OX-34 antigen) Length = 344 Score = 32.7 bits (73), Expect = 0.68 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 7/46 (15%) Frame = +3 Query: 261 PLP------EHEPVPDPDPGSTQAHDQEG*PLGLGRARVQRP-GAG 377 PLP EH+P P P TQ H Q+G PL R + + P G+G Sbjct: 291 PLPPSHRNREHQPKKRPPPSGTQVHQQKGPPLPRPRVQPKPPCGSG 336
>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) Length = 1505 Score = 32.7 bits (73), Expect = 0.68 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Frame = +3 Query: 153 PFSSGGPAPAHPRRQGPDRA*--HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQE 326 P S G +GP A SQG+ ER + P P + EP P PG A D + Sbjct: 1331 PSSEGDSCDGVEATEGPGSADTEEPKSQGEAEREEVPRPAEQTEPPPSGTPGPDDARDDD 1390
>YCF17_PORPU (P51355) Hypothetical 5.5 kDa protein ycf17 (ORF48)| Length = 48 Score = 32.7 bits (73), Expect = 0.68 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +1 Query: 376 ERINGRLAMVGFVAALSVEAARGGGLLDQAG 468 E NGR AM+GF+A + +E G GLL +G Sbjct: 15 ETWNGRFAMIGFMAVIFIELVTGKGLLYLSG 45
>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein| Length = 2480 Score = 32.0 bits (71), Expect = 1.2 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Frame = +3 Query: 195 QGPDRA*HGLSQGD---DERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*PLGLGRARVQR 365 QG + +S GD +E + P+PE P P P PG H + G G +R Sbjct: 2326 QGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSRASS 2385 Query: 366 PG 371 G Sbjct: 2386 WG 2387
>PSBS_ARATH (Q9XF91) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 265 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +1 Query: 370 APERINGRLAMVGFVAALSVEAARGGGLLDQAGSGAGL 483 A E GR+AM+GF A+L EA G G+L Q G+ Sbjct: 88 ANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGI 125
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 32.0 bits (71), Expect = 1.2 Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 3/87 (3%) Frame = +3 Query: 141 PVGRPFSSGGPAPAHP---RRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQ 311 P RP SS GP P R R S G + + P PE +P P P + Sbjct: 99 PGPRPGSSSGPKPGRSSAARTSATPRPGLIKSSGASSQQEPPAAKPESKPTPKPGQNVPK 158 Query: 312 AHDQEG*PLGLGRARVQRPGAGAHQRP 392 H P ++ +PGA RP Sbjct: 159 PHAPAPKPKPGAPSKSPKPGARPGPRP 185
>ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII subunit A3| (Elongin A3) (EloA3) (Transcription elongation factor B polypeptide 3C) Length = 546 Score = 31.6 bits (70), Expect = 1.5 Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Frame = +3 Query: 171 PAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEH-EP-VPDPDPGSTQAHDQEG*P-LG 341 PA + P R P R PLP+PE EP VP PG AH +G P LG Sbjct: 162 PADSGPHRDPPTRT-------------APLPMPEGPEPAVPGEQPGRGHAHAAQGGPLLG 208 Query: 342 LG-RARVQRPGAGAHQR 389 G + + Q G+H + Sbjct: 209 QGCQGQPQGEAVGSHSK 225
>HEMH_SYNEL (Q8DGU6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/33 (54%), Positives = 21/33 (63%) Frame = +1 Query: 370 APERINGRLAMVGFVAALSVEAARGGGLLDQAG 468 A ER NGRLAM+GF+ AL +E G G L G Sbjct: 355 AAERWNGRLAMLGFL-ALMIELISGQGPLHMLG 386
>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 31.2 bits (69), Expect = 2.0 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = +1 Query: 388 GRLAMVGFVAALSVEAARGGGLLDQAGSGAGL 483 GR+AM+GF A+L EA G G+L Q G+ Sbjct: 104 GRVAMIGFAASLLGEAITGKGILAQLNLETGI 135
>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 31.2 bits (69), Expect = 2.0 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = +1 Query: 388 GRLAMVGFVAALSVEAARGGGLLDQAGSGAGL 483 GR+AM+GF A+L EA G G+L Q G+ Sbjct: 104 GRVAMIGFAASLLGEAITGKGILAQLNLETGI 135
>CD2_HORSE (P37998) T-cell surface antigen CD2 precursor| Length = 347 Score = 31.2 bits (69), Expect = 2.0 Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 8/84 (9%) Frame = +3 Query: 153 PFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLP-------EHEPVPDPDPGSTQ 311 P +S P P R Q P G +V PLP + + P P PG TQ Sbjct: 272 PAASQPPPPPSHRPQAP---------GHRPQVPGHRPLPPGHRVQHQQQKRPAPTPG-TQ 321 Query: 312 AHDQEG*PLGLGRARVQ-RPGAGA 380 AH Q+G P L R RVQ +P GA Sbjct: 322 AHQQKGPP--LPRPRVQPKPPRGA 343
>PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 31.2 bits (69), Expect = 2.0 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = +1 Query: 388 GRLAMVGFVAALSVEAARGGGLLDQAGSGAGL 483 GR+AM+GF A+L EA G G+L Q G+ Sbjct: 102 GRVAMIGFAASLLGEAITGKGILAQLNLETGI 133
>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)| Length = 561 Score = 30.4 bits (67), Expect = 3.4 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +3 Query: 219 GLSQGDDERV-DFPLPLPEHEPVPDPDPGSTQAHDQE 326 G G DE + D PL PE P P+P PG+ +HDQ+ Sbjct: 243 GEGGGTDEGIYDVPLLGPEAPPSPEP-PGALASHDQD 278
>FABH2_CUPWR (P49245) 3-oxoacyl-[acyl-carrier-protein] synthase 3 B, chloroplast| precursor (EC 2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III B) (Beta-ketoacyl-ACP synthase III B) (KAS III B) Length = 402 Score = 30.4 bits (67), Expect = 3.4 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 11/64 (17%) Frame = +1 Query: 331 NPSVWDALAFSGPAP-ERINGRLAMVGFVAALSV-----EAARGGG-----LLDQAGSGA 477 N + DA+A P ER+ LA G +A S+ EA RGG L+ AG GA Sbjct: 331 NQRIIDAVATRLEVPQERVISNLANYGNTSAASIPLALDEAVRGGKVKAGHLIATAGFGA 390 Query: 478 GLGW 489 GL W Sbjct: 391 GLTW 394
>Y2144_PHOPR (Q6LQ84) Putative transport protein PBPRA2144| Length = 552 Score = 30.4 bits (67), Expect = 3.4 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +1 Query: 373 PERINGRLAMVGFVAALSVEAAR-GGGLLDQAGSGAGLGWFLATAGVFSLASLVPLL 540 P N L +G V L+V + GGG +D +G GL W G + +LVPLL Sbjct: 427 PPSANLALREIGIVLFLAVVGLKSGGGFVDTLVNGDGLSWM----GYGIVITLVPLL 479
>PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 388 GRLAMVGFVAALSVEAARGGGLLDQAGSGAGL 483 GR+AM+GF A+L E G G+L Q G+ Sbjct: 103 GRVAMIGFAASLLGEGITGKGILSQLNLETGI 134
>CT055_HUMAN (Q9BQ89) Protein C20orf55| Length = 295 Score = 30.4 bits (67), Expect = 3.4 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = +3 Query: 147 GRPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDF-PLPLPEHEPVPDPDPGSTQAHDQ 323 GR +G P PA P R P S RVD PLP P P P P + + + Sbjct: 128 GRAEGAGRPPPATPPRPPP-------STSAVRRVDVRPLPASPARPCPSPGPAAASSPAR 180 Query: 324 EG*PLGLGRAR 356 P GL R++ Sbjct: 181 ---PPGLQRSK 188
>CLFB_STAAU (O86476) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 913 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P PE EP PDPDP S D Sbjct: 570 PSPDPEPEPSPDPDPDSDSDSD 591
>CLFB_STAAC (Q5HCR7) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 913 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P PE EP PDPDP S D Sbjct: 570 PSPDPEPEPSPDPDPDSDSDSD 591
>DBP_RAT (P16443) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) (D site albumin promoter-binding protein 1) Length = 325 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/44 (36%), Positives = 18/44 (40%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHDQEG*PLGLGRARVQRPGAGAHQ 386 P P P P P P PGS + P G AR AG H+ Sbjct: 140 PAPSPARTPAPSPGPGSCSSSSPRSSP-GHAPARATLGAAGGHR 182
>DBP_MOUSE (Q60925) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) Length = 325 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/44 (36%), Positives = 18/44 (40%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHDQEG*PLGLGRARVQRPGAGAHQ 386 P P P P P P PGS + P G AR AG H+ Sbjct: 140 PAPSPARTPAPSPGPGSCSSSSPRSSP-GHAPARATLGAAGGHR 182
>HEMH_ANASP (Q8YQR8) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 30.0 bits (66), Expect = 4.4 Identities = 15/28 (53%), Positives = 19/28 (67%) Frame = +1 Query: 385 NGRLAMVGFVAALSVEAARGGGLLDQAG 468 NGR+AM+GF+ AL +E G GLL G Sbjct: 359 NGRIAMLGFI-ALIIELVTGQGLLHMIG 385
>CLFB_STAAN (Q7A382) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 877 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P PE EP PDPDP S D Sbjct: 570 PSPDPEPEPSPDPDPDSDSDSD 591
>CLFB_STAAM (Q99R07) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 877 Score = 30.0 bits (66), Expect = 4.4 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P PE EP PDPDP S D Sbjct: 570 PSPDPEPEPSPDPDPDSDSDSD 591
>ETV5_HUMAN (P41161) ETS translocation variant 5 (Ets-related protein ERM)| Length = 510 Score = 30.0 bits (66), Expect = 4.4 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +3 Query: 153 PFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDP 293 P S PA + GP A H L + ++ F +P P H+P+ P Sbjct: 158 PTSGHAPAAGPVQGVGPAPAPHSLPEPGPQQQTFAVPRPPHQPLQMP 204
>TROP_HUMAN (Q12816) Trophinin (MAGE-D3 antigen)| Length = 1387 Score = 30.0 bits (66), Expect = 4.4 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = +1 Query: 358 FSGP-APERINGRLAMVGFVAA--LSVEAARGGGLLDQAGSGAGLGWFLATAGVFSLAS 525 FSG +P +G GF LS A GGGL AG G GLG +G S +S Sbjct: 1135 FSGATSPSFCDGPSTSTGFSFGNGLSTNAGFGGGLNTSAGFGGGLGTSAGFSGGLSTSS 1193
>ZN358_HUMAN (Q9NW07) Zinc finger protein 358| Length = 481 Score = 29.6 bits (65), Expect = 5.8 Identities = 22/63 (34%), Positives = 26/63 (41%) Frame = +3 Query: 132 RCWPVGRPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQ 311 R P P S P H GPD L D +D P+P P+ +PVP PDP Sbjct: 396 RSTPSPTPVESSDPKAGHDA--GPD-----LVPSPD--LD-PVPSPDPDPVPSPDPNPVS 445 Query: 312 AHD 320 D Sbjct: 446 CPD 448
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 29.6 bits (65), Expect = 5.8 Identities = 20/62 (32%), Positives = 25/62 (40%) Frame = +3 Query: 153 PFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG* 332 P GGP P P QGP R L G + P P P + +P P G D+ Sbjct: 220 PVGPGGPPPHFPGMQGPPR----LPSGPPGPLGPPGPPPPGQGLPPPLGGPPNRGDRPPP 275 Query: 333 PL 338 P+ Sbjct: 276 PV 277
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 29.6 bits (65), Expect = 5.8 Identities = 32/94 (34%), Positives = 35/94 (37%), Gaps = 14/94 (14%) Frame = +3 Query: 141 PVGRPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPD--PDPGSTQA 314 P G P G PAP P + P A + S G ER P P P P P P PG Sbjct: 183 PGGMPRPMGKPAPK-PGARAPRVANNPFSTGGGER---PAPRPGGGPRPGGGPRPGGGPR 238 Query: 315 HDQEG*PLGL------------GRARVQRPGAGA 380 +G P G G QR GAGA Sbjct: 239 PQGQGRPGGQRDGQRDGQRDGQGNRGGQRQGAGA 272
>CLFB_STAAW (Q8NUL0) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 907 Score = 29.6 bits (65), Expect = 5.8 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P P+ EP PDPDP S D Sbjct: 570 PEPTPDPEPSPDPDPDSDSDSD 591 Score = 28.9 bits (63), Expect = 9.9 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGST 308 P P PE EP PDPDP T Sbjct: 556 PSPDPEPEPSPDPDPEPT 573
>CLFB_STAAS (Q6G644) Clumping factor B precursor (Fibrinogen-binding protein B)| (Fibrinogen receptor B) Length = 905 Score = 29.6 bits (65), Expect = 5.8 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGSTQAHD 320 P P P+ EP PDPDP S D Sbjct: 570 PEPTPDPEPSPDPDPDSDSDSD 591 Score = 28.9 bits (63), Expect = 9.9 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +3 Query: 255 PLPLPEHEPVPDPDPGST 308 P P PE EP PDPDP T Sbjct: 556 PSPDPEPEPSPDPDPEPT 573
>DNAJ_PROMM (Q7V9C8) Chaperone protein dnaJ| Length = 378 Score = 29.6 bits (65), Expect = 5.8 Identities = 21/53 (39%), Positives = 25/53 (47%) Frame = +3 Query: 102 GDHGGFELLRRCWPVGRPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPL 260 GD GGF L + G +GG A PRR+GP QGDD R D + Sbjct: 81 GDMGGFADLFETFFSGFG-GAGGSGGARPRRRGP-------QQGDDLRYDLKI 125
>THYG_MOUSE (O08710) Thyroglobulin precursor| Length = 2766 Score = 29.3 bits (64), Expect = 7.6 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +1 Query: 385 NGRLAMVGFVAALSVEAARGGGLLDQAGSGAGLGWFLATAGVF 513 N RL + GF+++ S E A GLLDQ A L W + G F Sbjct: 2333 NYRLGVFGFLSSGSDEVAGNWGLLDQV---AALTWVQSHIGAF 2372
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 29.3 bits (64), Expect = 7.6 Identities = 32/87 (36%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Frame = +3 Query: 141 PVGRPFSSGGPAPAHPRRQGPDRA*HGLSQGDD---ERVDFPLPLPEH---EPVPDPDPG 302 PV P GGP P+ P GP A GL G + + + P P P+H PV D P Sbjct: 207 PVSGP-GPGGPGPSGPGGPGPGPA-PGLCPGPNVMLNQQNPPAPQPQHLPRRPVKDIPP- 263 Query: 303 STQAHDQEG*PL-GLGRARVQRPGAGA 380 Q Q G P G A V PG G+ Sbjct: 264 LMQTSIQGGIPAPGPIPAAVPGPGPGS 290
>APBA2_RAT (O35431) Amyloid beta A4 precursor protein-binding family A member| 2 (Neuron-specific X11L protein) (Neuronal Munc18-1-interacting protein 2) (Mint-2) (Adapter protein X11beta) Length = 750 Score = 29.3 bits (64), Expect = 7.6 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +3 Query: 216 HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQE 326 H S G + ++P H P+P+ DP + HDQE Sbjct: 148 HTHSHGAENSQEYP---DSHLPIPEDDPTVLEVHDQE 181
>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte antigen Ly-37) Length = 344 Score = 29.3 bits (64), Expect = 7.6 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 7/46 (15%) Frame = +3 Query: 261 PLP------EHEPVPDPDPGSTQAHDQEG*PLGLGRARVQRP-GAG 377 PLP EH+ P P TQ H Q+G PL R + + P G+G Sbjct: 290 PLPPGHRTREHQQKKRPPPSGTQIHQQKGPPLPRPRVQPKPPCGSG 335
>FOXC1_MOUSE (Q61572) Forkhead box protein C1 (Forkhead-related protein FKHL7)| (Forkhead-related transcription factor 3) (FREAC-3) (Transcription factor FKH-1) (Mesoderm/mesenchyme forkhead 1) (MF-1) Length = 553 Score = 29.3 bits (64), Expect = 7.6 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 4/56 (7%) Frame = +3 Query: 168 GPAPAHPRRQGPDRA*HGLSQGDDERVDFP----LPLPEHEPVPDPDPGSTQAHDQ 323 G A P+ + PD + LS G P L L EP P P P H Q Sbjct: 251 GSAATVPKIESPDSSSSSLSSGSSPPGSLPSARPLSLDAAEPAPPPQPAPPPHHSQ 306
>CRIM1_CHICK (Q8AWW5) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)| Length = 1048 Score = 28.9 bits (63), Expect = 9.9 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = +1 Query: 409 FVAALSVEAARGGGLLDQAGSGAGLGWFLATAGVFSLASLV 531 ++AA+S R GG G G G GW LA AG L +L+ Sbjct: 2 YLAAVSAGRRRPGG----DGGGGGGGWHLAAAGWLLLLALL 38
>IASPP_MOUSE (Q5I1X5) RelA-associated inhibitor (Inhibitor of ASPP protein)| (Protein iASPP) (PPP1R13B-like protein) (NFkB-interacting protein 1) Length = 824 Score = 28.9 bits (63), Expect = 9.9 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +3 Query: 165 GGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQ 323 GGP P GP+ +++G + R P P P P+P P P + +Q Sbjct: 551 GGPGPG-----GPEPELSTITEGSEARAGPPAPAPP-APIPPPAPPQSSPPEQ 597
>THYG_RAT (P06882) Thyroglobulin precursor| Length = 2768 Score = 28.9 bits (63), Expect = 9.9 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +1 Query: 385 NGRLAMVGFVAALSVEAARGGGLLDQAGSGAGLGWFLATAGVF 513 N RL + GF+++ S E A GLLDQ A L W G F Sbjct: 2335 NYRLGVFGFLSSGSDEVAGNWGLLDQV---AALTWVQTHIGAF 2374
>GNDS_HUMAN (Q12967) Ral guanine nucleotide dissociation stimulator (RalGEF)| (RalGDS) Length = 914 Score = 28.9 bits (63), Expect = 9.9 Identities = 20/55 (36%), Positives = 25/55 (45%) Frame = +3 Query: 171 PAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*P 335 PAPA +Q P+ A GL P P E EP P+ DP +Q + E P Sbjct: 309 PAPAPELQQAPEPA-VGLESA-------PAPALELEPAPEQDPAPSQTLELEPAP 355
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 28.9 bits (63), Expect = 9.9 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +1 Query: 376 ERINGRLAMVGFVAALSVEAARGGGLLDQAGSGAGLGWF 492 E INGR AM+G A++ E GL+ Q L WF Sbjct: 100 EVINGRFAMLGAAGAIAPEILGKAGLIPQE---TALAWF 135
>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC| stretch-binding protein) (CSBP) Length = 463 Score = 28.9 bits (63), Expect = 9.9 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 23/100 (23%) Frame = +3 Query: 105 DHGGFELL---RRCWPVGRPFSSGG------------PAPAHPR-------RQGPDRA*H 218 D+GGF ++ RR PVG P G P P R R+GP Sbjct: 235 DYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPP 294 Query: 219 GLS-QGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*P 335 G +G + PLP P P P G A+D+ G P Sbjct: 295 GRGGRGGSRARNLPLP-----PPPPPRGGDLMAYDRRGRP 329
>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| Length = 463 Score = 28.9 bits (63), Expect = 9.9 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 23/100 (23%) Frame = +3 Query: 105 DHGGFELL---RRCWPVGRPFSSGG------------PAPAHPR-------RQGPDRA*H 218 D+GGF ++ RR PVG P G P P R R+GP Sbjct: 235 DYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPP 294 Query: 219 GLS-QGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*P 335 G +G + PLP P P P G A+D+ G P Sbjct: 295 GRGGRGGSRARNLPLP-----PPPPPRGGDLMAYDRRGRP 329
>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K| Length = 463 Score = 28.9 bits (63), Expect = 9.9 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 23/100 (23%) Frame = +3 Query: 105 DHGGFELL---RRCWPVGRPFSSGG------------PAPAHPR-------RQGPDRA*H 218 D+GGF ++ RR PVG P G P P R R+GP Sbjct: 235 DYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPP 294 Query: 219 GLS-QGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*P 335 G +G + PLP P P P G A+D+ G P Sbjct: 295 GRGGRGGSRARNLPLP-----PPPPPRGGDLMAYDRRGRP 329
>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| (Transformation up-regulated nuclear protein) (TUNP) Length = 463 Score = 28.9 bits (63), Expect = 9.9 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 23/100 (23%) Frame = +3 Query: 105 DHGGFELL---RRCWPVGRPFSSGG------------PAPAHPR-------RQGPDRA*H 218 D+GGF ++ RR PVG P G P P R R+GP Sbjct: 235 DYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPP 294 Query: 219 GLS-QGDDERVDFPLPLPEHEPVPDPDPGSTQAHDQEG*P 335 G +G + PLP P P P G A+D+ G P Sbjct: 295 GRGGRGGSRARNLPLP-----PPPPPRGGDLMAYDRRGRP 329
>MCM3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein)| Length = 1971 Score = 28.9 bits (63), Expect = 9.9 Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 19/92 (20%) Frame = +3 Query: 138 WPVGRPFSSGGPAPAHPRRQGPDRA*HGLSQGDDERVDFPLPLPE--------------- 272 +P P S G P PA+ L QG +E + PLP Sbjct: 246 FPTASPGSLGEPFPANKP---------SLRQGCEEAISQVEPLPTLMKGLKRKEDQDRSP 296 Query: 273 ----HEPVPDPDPGSTQAHDQEG*PLGLGRAR 356 HE DPDP S H + P+ L R R Sbjct: 297 RRHCHEAAEDPDPLSRGDHPPDKRPVRLNRPR 328
>CT151_HUMAN (Q8NC74) Protein C20orf151| Length = 664 Score = 28.9 bits (63), Expect = 9.9 Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 2/74 (2%) Frame = +3 Query: 153 PFSSGGPAPAHPRRQGPDRA*HGLSQG--DDERVDFPLPLPEHEPVPDPDPGSTQAHDQE 326 P P P R P S G +DE PLP P +P P P P H + Sbjct: 501 PEQEEASTPMDPSRPLPGSQLSLSSPGSTEDEDTGRPLPPPHPQPPPHPQPPDLDGHPEP 560 Query: 327 G*PLGLGRARVQRP 368 +A V RP Sbjct: 561 ------SKAEVLRP 568 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,081,347 Number of Sequences: 219361 Number of extensions: 1096270 Number of successful extensions: 5496 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 4062 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5155 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
