>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
            (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score =  102 bits (253), Expect = 1e-21
 Identities = 54/171 (31%), Positives = 101/171 (59%)
 Frame = +3

Query: 9    VNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEV 188
            +  KP V+TYN +I+ Y  A  + EA+K+   M   G +P+ VTY TLI+ + K   +E 
Sbjct: 505  IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 564

Query: 189  AMDLYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIA 368
            A+ L+  M+  G+SPD  TY+ ++  L +  + AAA +L+  + ++G    L TYNII+ 
Sbjct: 565  ALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILH 624

Query: 369  LQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFL 521
               K +  D+ +++++++ +   + +  T++I+++ L   G  DEA+ +F+
Sbjct: 625  GLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFV 675



 Score = 92.8 bits (229), Expect = 6e-19
 Identities = 50/169 (29%), Positives = 84/169 (49%)
 Frame = +3

Query: 21  PTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDL 200
           P  +TYN I+H Y  +   +EA+   ++M   G +PD VTY  L+D   K+G    A  +
Sbjct: 264 PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323

Query: 201 YGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAK 380
           +  M + GL P+  TY  ++      G L   + L   M+ NG  P+   ++I+I   AK
Sbjct: 324 FDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAK 383

Query: 381 ARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEM 527
               D  + ++  M+  G  P+ +TY  V+ +L   G +++A   F +M
Sbjct: 384 QGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432



 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 4/191 (2%)
 Frame = +3

Query: 3   SSVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEM---EGAGYQPDRVTYCTLIDIHAKS 173
           + + C P V +YN ++      N  +EA+++   M    G G  PD V+Y T+I+   K 
Sbjct: 150 TELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE 209

Query: 174 GYLEVAMDLYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTY 353
           G  + A   Y  M + G+ PD  TY++++  L K   +  A ++   M+ NG  P+ +TY
Sbjct: 210 GDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY 269

Query: 354 NIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEM-R 530
           N I+     +      +   + M+  G  PD +TYS++M+ L   G   EA  +F  M +
Sbjct: 270 NSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTK 329

Query: 531 RDWAPDEPAYG 563
           R   P+   YG
Sbjct: 330 RGLKPEITTYG 340



 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 1/182 (0%)
 Frame = +3

Query: 21  PTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDL 200
           P VVTYN II A  +A  + +A++V   M   G  PD +TY +++  +  SG  + A+  
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 201 YGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAK 380
             +M+  G+ PD  TYS +++ L K G+   A K+F  M   G  P + TY  ++   A 
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348

Query: 381 ARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRDWA-PDEPA 557
                 +  L   M   G  PD   +SI++      G +D+A  VF +MR+    P+   
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVT 408

Query: 558 YG 563
           YG
Sbjct: 409 YG 410



 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 50/170 (29%), Positives = 82/170 (48%)
 Frame = +3

Query: 18  KPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMD 197
           +P VVTY+ ++    +     EA K+F+ M   G +P+  TY TL+  +A  G L     
Sbjct: 298 EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 357

Query: 198 LYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQA 377
           L   M   G+ PD + +S ++    K G++  A  +F +M   G  PN VTY  +I +  
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC 417

Query: 378 KARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEM 527
           K+   ++ +  +  M   G  P  I Y+ ++  L  C   + AE + LEM
Sbjct: 418 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 467



 Score = 85.9 bits (211), Expect = 7e-17
 Identities = 53/163 (32%), Positives = 91/163 (55%)
 Frame = +3

Query: 30  VTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGR 209
           + +N II ++ +   + E+ K+FE M   G +P+ +TY TLI+ +  +G ++ AM L   
Sbjct: 477 IFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSG 536

Query: 210 MQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARN 389
           M  VGL P+T TYS ++N   K  ++  A  LF EM  +G +P+++TYNII+    + R 
Sbjct: 537 MVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRR 596

Query: 390 YDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVF 518
                +LY  +  +G + +  TY+I++  L      D+A  +F
Sbjct: 597 TAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMF 639



 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 45/153 (29%), Positives = 80/153 (52%)
 Frame = +3

Query: 21  PTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDL 200
           P  + YN +IH     N    A ++  EM   G   + + + ++ID H K G +  +  L
Sbjct: 439 PGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKL 498

Query: 201 YGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAK 380
           +  M  +G+ P+  TY+ ++N     G++  A KL   M+  G  PN VTY+ +I    K
Sbjct: 499 FELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCK 558

Query: 381 ARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVL 479
               ++ + L+++M+ +G  PD ITY+I+++ L
Sbjct: 559 ISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591



 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 2/174 (1%)
 Frame = +3

Query: 18  KPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMD 197
           KP + TY  ++  Y     L E   + + M   G  PD   +  LI  +AK G ++ AM 
Sbjct: 333 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAML 392

Query: 198 LYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQA 377
           ++ +M++ GL+P+  TY AV+  L K G++  A   F +MID G +P  + YN +I    
Sbjct: 393 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 452

Query: 378 KARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHC--GHLDEAEAVFLEMRR 533
               ++   +L  +M   G   + I ++ +++   HC  G + E+E +F  M R
Sbjct: 453 TCNKWERAEELILEMLDRGICLNTIFFNSIID--SHCKEGRVIESEKLFELMVR 504



 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 2/164 (1%)
 Frame = +3

Query: 21  PTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDL 200
           P    ++ +I AY +   + +A+ VF +M   G  P+ VTY  +I I  KSG +E AM  
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLY 428

Query: 201 YGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAK 380
           + +M + GLSP    Y+++++ L    +   A +L  EM+D G   N + +N II    K
Sbjct: 429 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 488

Query: 381 ARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHC--GHLDEA 506
                   KL+  M   G +P+ ITY+ ++   G+C  G +DEA
Sbjct: 489 EGRVIESEKLFELMVRIGVKPNVITYNTLIN--GYCLAGKMDEA 530



 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 49/174 (28%), Positives = 85/174 (48%)
 Frame = +3

Query: 6    SVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLE 185
            SV  KP  VTY+ +I+ Y + + + +A+ +F+EME +G  PD +TY  ++    ++    
Sbjct: 539  SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 598

Query: 186  VAMDLYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIII 365
             A +LY R+ E G   +  TY+ +++ L K      A ++F  +          T+NI+I
Sbjct: 599  AAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMI 658

Query: 366  ALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEM 527
                K    D    L+      G  P+  TY ++ E +   G L+E + +FL M
Sbjct: 659  DALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSM 712



 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 1/183 (0%)
 Frame = +3

Query: 21  PTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDL 200
           P VV+Y  +I+ + +     +A   + EM   G  PD VTY ++I    K+  ++ AM++
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253

Query: 201 YGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAK 380
              M + G+ PD  TY+++++     GQ   A     +M  +G  P++VTY++++    K
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313

Query: 381 ARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVF-LEMRRDWAPDEPA 557
                   K++  M   G +P+  TY  +++     G L E   +  L +R    PD   
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373

Query: 558 YGL 566
           + +
Sbjct: 374 FSI 376



 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 32/111 (28%), Positives = 53/111 (47%)
 Frame = +3

Query: 33  TYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRM 212
           TYN I+H   +     +A+++F+ +     + +  T+  +ID   K G  + A DL+   
Sbjct: 618 TYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAF 677

Query: 213 QEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIII 365
              GL P+ +TY  +   +   G L    +LF  M DNGCT +    N I+
Sbjct: 678 SSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIV 728



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
 Frame = +3

Query: 84  AVKVFEEMEGAGYQ---PDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSA 254
           AV  +  M  AG     PD  TY  LI    ++G L++     G + + G   D   ++ 
Sbjct: 68  AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127

Query: 255 VVNCLGKGGQLAAAYKLFCE-MIDNGCTPNLVTYNII---IALQAKARNYDNVVKLYRDM 422
           ++  L    + + A  +    M + GC PN+ +YNI+   +  + +++    ++ +  D 
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187

Query: 423 QIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEM-RRDWAPDEPAY 560
           +  G  PD ++Y+ V+      G  D+A + + EM  R   PD   Y
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234

>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915|
          Length = 463

 Score = 89.7 bits (221), Expect = 5e-18
 Identities = 50/170 (29%), Positives = 93/170 (54%)
 Frame = +3

Query: 18  KPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMD 197
           KP ++TYN +I+   ++  +  A  +  E++ +GY P+ VTY T++ ++ K+  +   + 
Sbjct: 185 KPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQ 244

Query: 198 LYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQA 377
           L+  M+  G + D + Y AVV+ L K G+   AY+   E++  G   ++V+YN ++ L  
Sbjct: 245 LFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYF 304

Query: 378 KARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEM 527
           K  N D V  L  +++  G + D+ T++I++  L   G    AE  F+ M
Sbjct: 305 KDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSM 354



 Score = 89.4 bits (220), Expect = 7e-18
 Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
 Frame = +3

Query: 117 GYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAA 296
           G  PD VTY TLI  + +   +E A  +  RM++ G+ PD  TY++++    +   L   
Sbjct: 43  GVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHV 102

Query: 297 YKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVK-LYRDMQIAGFRPDKITYSIVME 473
             LF EM++ G  P+L +YN ++    K   ++   + LY+D+Q+AG  P   TY+++++
Sbjct: 103 LYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLD 162

Query: 474 VLGHCGHLDEAEAVFLEMRRDWAPDEPAYGL 566
            L  CG++D A  +F EM+  + P+   Y +
Sbjct: 163 ALCKCGYIDNALELFKEMQSRFKPELMTYNI 193



 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 56/182 (30%), Positives = 99/182 (54%), Gaps = 2/182 (1%)
 Frame = +3

Query: 21  PTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDL 200
           P VVTYN +I  Y R   + EA  V   M  AG +PD  TY +LI   A+   L+  + L
Sbjct: 46  PDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYL 105

Query: 201 YGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYK-LFCEMIDNGCTPNLVTYNIIIALQA 377
           +  M E G+ PD ++Y+ ++ C  K G+   A++ L+ ++   G  P   TYN+++    
Sbjct: 106 FDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALC 165

Query: 378 KARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRD-WAPDEP 554
           K    DN ++L+++MQ + F+P+ +TY+I++  L     +  A+ +  E+++  + P+  
Sbjct: 166 KCGYIDNALELFKEMQ-SRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAV 224

Query: 555 AY 560
            Y
Sbjct: 225 TY 226



 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 55/174 (31%), Positives = 92/174 (52%), Gaps = 1/174 (0%)
 Frame = +3

Query: 18  KPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMD 197
           +P V TYN +I    R   L   + +F+EM   G  PD  +Y TL+  + K G  E A  
Sbjct: 80  RPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFR 139

Query: 198 -LYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQ 374
            LY  +Q  GL+P   TY+ +++ L K G +  A +LF EM  +   P L+TYNI+I   
Sbjct: 140 VLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEM-QSRFKPELMTYNILINGL 198

Query: 375 AKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRD 536
            K+R       +  +++ +G+ P+ +TY+ ++++      +     +FLEM+R+
Sbjct: 199 CKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKRE 252



 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 1/172 (0%)
 Frame = +3

Query: 21  PTVVTYNRIIHAYGRANYLREAVKV-FEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMD 197
           P + +YN ++  Y +     EA +V +++++ AG  P   TY  L+D   K GY++ A++
Sbjct: 116 PDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALE 175

Query: 198 LYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQA 377
           L+  MQ     P+  TY+ ++N L K  ++  A  +  E+  +G TPN VTY  I+ L  
Sbjct: 176 LFKEMQS-RFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYF 234

Query: 378 KARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRR 533
           K R     ++L+ +M+  G+  D   Y  V+  L   G   EA     E+ R
Sbjct: 235 KTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVR 286



 Score = 72.4 bits (176), Expect = 8e-13
 Identities = 43/148 (29%), Positives = 78/148 (52%)
 Frame = +3

Query: 36  YNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQ 215
           Y  ++ A  +    +EA +  +E+   G + D V+Y TL++++ K G L+   DL G ++
Sbjct: 261 YFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIE 320

Query: 216 EVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYD 395
             G+  D +T++ +VN L + GQ   A + F  M + G   NLVT N ++    KA + D
Sbjct: 321 RRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVD 380

Query: 396 NVVKLYRDMQIAGFRPDKITYSIVMEVL 479
             ++ +  M++     D+ TY+ V+  L
Sbjct: 381 RAMRYFESMEV----KDEYTYTSVVHNL 404



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 33/108 (30%), Positives = 50/108 (46%)
 Frame = +3

Query: 204 GRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKA 383
           G +   GLS  T   +  V+ L K  +L  A  L  + I  G  P++VTYN +I+   + 
Sbjct: 4   GLVNFTGLS--TRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRF 61

Query: 384 RNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEM 527
              +    + R M+ AG RPD  TY+ ++        LD    +F EM
Sbjct: 62  VGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEM 109



 Score = 36.2 bits (82), Expect = 0.066
 Identities = 28/99 (28%), Positives = 46/99 (46%)
 Frame = +3

Query: 33  TYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRM 212
           T+  I++   R    R A + F  M   G   + VT   L+D   K+G+++ AM  +  M
Sbjct: 330 THTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESM 389

Query: 213 QEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNG 329
           +      D +TY++VV+ L K  +   A KL     + G
Sbjct: 390 E----VKDEYTYTSVVHNLCKDMRFVCASKLLLSCYNKG 424

>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1|
          Length = 695

 Score = 65.9 bits (159), Expect = 8e-11
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
 Frame = +3

Query: 18  KPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGY----LE 185
           +P    Y  +I   GR  YL++A ++F +M+    +P   TY  L ++ A+S +    L+
Sbjct: 168 QPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQ 227

Query: 186 VAMDLYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNG--CTPNLVTYNI 359
            A+ L  ++Q      +  TY A++    K   L     +F E+I  G   T     + +
Sbjct: 228 SALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLL 287

Query: 360 IIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCG 491
           +  +Q K   +   ++++R M   G +P +  Y++++E    CG
Sbjct: 288 VGCIQDKKTGFRQAMQVWRQMLSLGIKPSRHGYNLLLEAARDCG 331



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
 Frame = +3

Query: 168 KSGYLEVAMDLYGR--MQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPN 341
           K G L  A+DL+ R  ++E  L P    Y+ ++   G+ G L  A++LF +M      P+
Sbjct: 146 KEGKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPS 205

Query: 342 LVTYNIIIALQAKARNYD----NVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAE 509
             TY  +  + A++   D    + +KL + +Q   F+ +  TY  +++V   C  L    
Sbjct: 206 DATYTALFNVCAESPWKDSALQSALKLRQQLQARNFQLNLKTYHALLKVAAKCADLRLCL 265

Query: 510 AVFLEM 527
            VF E+
Sbjct: 266 DVFKEI 271



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 12  NCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLI--DIHAKSGYLE 185
           N +  + TY+ ++    +   LR  + VF+E+   G+     T+C L+   I  K     
Sbjct: 240 NFQLNLKTYHALLKVAAKCADLRLCLDVFKEIIQRGHAVTEETFCFLLVGCIQDKKTGFR 299

Query: 186 VAMDLYGRMQEVGLSPDTFTYSAVV 260
            AM ++ +M  +G+ P    Y+ ++
Sbjct: 300 QAMQVWRQMLSLGIKPSRHGYNLLL 324



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
 Frame = +3

Query: 123 QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTY-SAVVNCLGKGGQLAAAY 299
           + D   + TLI   +K G LE A  L   + + G+ P+  T+ +  + C     +     
Sbjct: 515 EADVTFFNTLIRKKSKLGDLEGAKALLPILAKKGIVPNLRTFCNLAIGC----HRPRDGM 570

Query: 300 KLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQ 425
           +L  +M  +  +PN+  Y+ +I    K  +Y  ++ + +DM+
Sbjct: 571 QLLADMKKSQVSPNIHIYSTLINAALKKLDYTYLISILKDMR 612

>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1|
          Length = 698

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
 Frame = +3

Query: 18  KPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGY----LE 185
           +P    Y  +I   GR  YL++A  ++ +M+    +P   TY  L ++ A+S +    L+
Sbjct: 168 QPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQ 227

Query: 186 VAMDLYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIII 365
            A+ L  ++Q      +  TY A++    K   L     +F E+I  G      T++ ++
Sbjct: 228 SALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLL 287

Query: 366 --ALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCG 491
              +Q K   +   ++++R M   G +P + +Y++++     CG
Sbjct: 288 MGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAARDCG 331



 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
 Frame = +3

Query: 168 KSGYLEVAMDLYGR--MQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPN 341
           K G L  A+DL+ R  ++E  L P    Y+A++   G+ G L  A+ L+ +M      P+
Sbjct: 146 KEGKLVEALDLFERQMLKEERLQPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPS 205

Query: 342 LVTYNIIIALQAKARNYD----NVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAE 509
             TY  +  + A++   D    + +KL + +Q   F  +  TY  ++++   C  L    
Sbjct: 206 DATYTALFNVCAESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCL 265

Query: 510 AVFLEM 527
            VF E+
Sbjct: 266 DVFKEI 271



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +3

Query: 123 QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTY-SAVVNCLGKGGQLAAAY 299
           + D   + TL+   +K G LE A  L   + + GL P+  T+ +  + C      L    
Sbjct: 515 EADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGL---- 570

Query: 300 KLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQ 425
           +L  +M  +  TPN   Y+ +I    +  NY  ++ + +DM+
Sbjct: 571 QLLTDMKKSQVTPNSHIYSALINAAVRKLNYTYLINILKDMK 612

>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1|
          Length = 700

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
 Frame = +3

Query: 18  KPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGY----LE 185
           +P    Y  +I   GR  YL++A  ++ +M+    +P   TY  L ++ A+S +    L+
Sbjct: 170 QPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPWKDSALQ 229

Query: 186 VAMDLYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIII 365
            A+ L  ++Q      +  TY A++    K   L     +F E+I  G      T++ ++
Sbjct: 230 SALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVVTEETFSFLL 289

Query: 366 --ALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCG 491
              +Q K   +   ++++R M   G +P + +Y++++     CG
Sbjct: 290 MGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAARDCG 333



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +3

Query: 123 QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTY-SAVVNCLGKGGQLAAAY 299
           + D   + TL+   +K G LE A  L   + + GL P+  T+ +  + C      L    
Sbjct: 517 EADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGL---- 572

Query: 300 KLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQ 425
           +L  +M  +  TPN   Y+ +I    +  NY  ++ + +DM+
Sbjct: 573 QLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMK 614

>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
 Frame = +3

Query: 99   EEMEGAGYQPDRVTYCTLIDIHAKSGYLE---VAMDLYGRMQEVGLSPDTFTYSAVVNCL 269
            + M+  GY P   T+  LI+   + G  +    A++++   +   + P  F Y+AV++ L
Sbjct: 877  DNMKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKL 936

Query: 270  GKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQ 425
            G+  +    +KLF EM ++G  P  VTY  +I    +  +     KL+ +M+
Sbjct: 937  GRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEME 988



 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
 Frame = +3

Query: 84   AVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAVVN 263
            A+ +FEE +    +P    Y  ++    ++        L+  M+E GL P + TY  V+N
Sbjct: 910  ALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVIN 969

Query: 264  CLGKGGQLAAAYKLFCEMIDN-GCTPNLVTYNIIIALQAKAR-NYDNVVKLYRDMQIAGF 437
               + G  + A KLF EM +     P +  YN +I  + +   N +  +  Y  +     
Sbjct: 970  AACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATDI 1029

Query: 438  RPDKITYSIVMEVLG 482
             P   TY ++M+  G
Sbjct: 1030 EPSSHTYKLLMDAYG 1044



 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
 Frame = +3

Query: 210  MQEVGLSPDTFTYSAVVNCLGKGGQL---AAAYKLFCEMIDNGCTPNLVTYNIIIALQAK 380
            M+ +G  P   T++ ++N   + G       A  +F E   +   P++  YN +++   +
Sbjct: 879  MKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGR 938

Query: 381  ARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEM 527
            AR      KL+++M+ +G  P  +TY  V+      G    AE +F EM
Sbjct: 939  ARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEM 987

>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)|
           (Leucine-rich PPR motif-containing protein)
          Length = 1273

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 35/122 (28%), Positives = 54/122 (44%)
 Frame = +3

Query: 36  YNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQ 215
           YN ++  Y +  Y         +ME A  QP+RVTY  LI  +   G +E A  + G M+
Sbjct: 44  YNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMK 103

Query: 216 EVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYD 395
              L      +SA+V    + G +  A  +   M D G  P   TY  ++   A+  + D
Sbjct: 104 TKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEKGDID 163

Query: 396 NV 401
           +V
Sbjct: 164 HV 165



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 27/142 (19%), Positives = 59/142 (41%)
 Frame = +3

Query: 84  AVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAVVN 263
           A ++++ ++  G   D   Y  L+ ++ ++ Y     D   +M+E  + P+  TY  ++ 
Sbjct: 25  AHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIA 84

Query: 264 CLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRP 443
                G +  A K+   M           ++ ++   A+A + +N   +   M+ AG  P
Sbjct: 85  SYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEP 144

Query: 444 DKITYSIVMEVLGHCGHLDEAE 509
              TY  ++      G +D  +
Sbjct: 145 GPDTYLALLNAYAEKGDIDHVK 166



 Score = 32.3 bits (72), Expect = 0.96
 Identities = 23/116 (19%), Positives = 47/116 (40%)
 Frame = +3

Query: 183 EVAMDLYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNII 362
           E A  ++  +Q++G   D   Y+A++    +     +      +M +    PN VTY  +
Sbjct: 23  EFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRL 82

Query: 363 IALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMR 530
           IA      + +   K+   M+       +  +S ++      G ++ AE +   MR
Sbjct: 83  IASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMR 138

>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1207

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
 Frame = +3

Query: 141 YCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAVVNCLGKGGQ-LAAAYKLFCEM 317
           Y T++   A+ G     + ++  +++ GLSPD  +Y+A + C+G+  Q +    +   +M
Sbjct: 236 YNTVMLGWARKGSFRELVYVFLMLKDAGLSPDLCSYAAALQCMGRRDQDVRTIQRCLKQM 295

Query: 318 IDNGCTPNLVTYNIIIALQAKARNYDNVVK 407
           ++ G  P L+  ++++  + +A     VVK
Sbjct: 296 MEEGFQPQLLFTDLVLEEEDRAALLRAVVK 325



 Score = 30.4 bits (67), Expect = 3.6
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
 Frame = +3

Query: 24  TVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGY-LEVAMDL 200
           T+  YN ++  + R    RE V VF  ++ AG  PD  +Y   +    +    +      
Sbjct: 232 TLHMYNTVMLGWARKGSFRELVYVFLMLKDAGLSPDLCSYAAALQCMGRRDQDVRTIQRC 291

Query: 201 YGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYK 302
             +M E G  P       V+    +   L A  K
Sbjct: 292 LKQMMEEGFQPQLLFTDLVLEEEDRAALLRAVVK 325



 Score = 30.4 bits (67), Expect = 3.6
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +3

Query: 246 YSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVT---YNIIIALQAKARNYDNVVKLYR 416
           + A   C    GQ+  A+ +     +NG    ++T   YN ++   A+  ++  +V ++ 
Sbjct: 198 FLAFFECCVCTGQVPLAHHVLVTHHNNGDRQQVLTLHMYNTVMLGWARKGSFRELVYVFL 257

Query: 417 DMQIAGFRPDKITYSIVMEVLG 482
            ++ AG  PD  +Y+  ++ +G
Sbjct: 258 MLKDAGLSPDLCSYAAALQCMG 279

>YG3M_YEAST (P48237) Hypothetical 101.4 kDa protein in RPL24B-RSR1 intergenic|
           region
          Length = 864

 Score = 37.0 bits (84), Expect = 0.039
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = +3

Query: 216 EVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEM--IDNGCTPNLVTYNIIIALQAKARN 389
           + G++P+    + V+    +      A+  F  M  +     P++ TYN ++ +  K RN
Sbjct: 313 DYGITPNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTMLRICEKERN 372

Query: 390 YDNVVKLYRDMQIAGFRPDKITYSIVMEVL 479
           +   + L++++Q    +P   TY ++  VL
Sbjct: 373 FPKALDLFQEIQDHNIKPTTNTYIMMARVL 402



 Score = 30.4 bits (67), Expect = 3.6
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +3

Query: 117 GYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLS--PDTFTYSAVVNCLGKGGQLA 290
           G  P++    T+I  +++    + A + +  M+ +     PD  TY+ ++    K     
Sbjct: 315 GITPNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTMLRICEKERNFP 374

Query: 291 AAYKLFCEMIDNGCTPNLVTYNIIIALQAKA 383
            A  LF E+ D+   P   TY ++  + A +
Sbjct: 375 KALDLFQEIQDHNIKPTTNTYIMMARVLASS 405

>AEP3_CANGA (Q6FKT1) ATPase expression protein 3|
          Length = 623

 Score = 36.6 bits (83), Expect = 0.051
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = +3

Query: 246 YSAVVNCLGKGGQLAAAYKLFCEMIDNGCTPNLVTYNIII------ALQAKARNYDNVVK 407
           Y+ ++    K    A   +LF +M   GC PN  TYNI++          K R+  N + 
Sbjct: 221 YNDILYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILLLNLVKKVHMRKIRSIKNELL 280

Query: 408 LY-RDMQIAGFRPDKITYS 461
            Y R+MQ  G   D +T++
Sbjct: 281 FYLRNMQKNGIFCDTVTWN 299

>MYCPP_HUMAN (Q7Z401) C-myc promoter-binding protein|
          Length = 1863

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 162 HAKSGYLEVAMDLYGRMQEVGLSP-DTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTP 338
           H+K   L+ A D+  +MQ   + P D   Y  ++   G+  Q   A ++  EM   G  P
Sbjct: 784 HSKVRALKTAYDVLKKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDP 843

Query: 339 NLVTY 353
           N +TY
Sbjct: 844 NAITY 848



 Score = 30.4 bits (67), Expect = 3.6
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 36  YNRIIHAYGRANYLREAVKVFEEMEGAGYQP-DRVTYCTLIDIHAKSGYLEVAMDLYGRM 212
           Y ++ H+  RA  L+ A  V ++M+     P D V Y  L+ +  +     +A+ +   M
Sbjct: 779 YVKVCHSKVRA--LKTAYDVLKKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEM 836

Query: 213 QEVGLSPDTFTY 248
           Q+ G+ P+  TY
Sbjct: 837 QKAGIDPNAITY 848

>PT309_YEAST (P32522) Protein PET309, mitochondrial precursor|
          Length = 965

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 22/138 (15%), Positives = 54/138 (39%)
 Frame = +3

Query: 123 QPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYK 302
           Q D+  +  L+  H++    +     +  +  +G  P    Y  ++  + + G+L +  K
Sbjct: 308 QHDQNQFDYLLVAHSRLHNWDALQQQFNALFGIGKLPSIQHYGILMYTMARIGELDSVNK 367

Query: 303 LFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFRPDKITYSIVMEVLG 482
           L+ +++  G  P       ++    K  ++      +   +     P   T++I+++V  
Sbjct: 368 LYTQLLRRGMIPTYAVLQSLLYAHYKVGDFAACFSHFELFKKYDITPSTATHTIMLKVYR 427

Query: 483 HCGHLDEAEAVFLEMRRD 536
               LD A  +   +  D
Sbjct: 428 GLNDLDGAFRILKRLSED 445

>HXC9A_BRARE (Q9YGS6) Homeobox protein Hox-C9a (Hox-C9)|
          Length = 260

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 204 GRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMID 323
           G  +  GL PDTF      +CLG  G+    Y L+C  +D
Sbjct: 111 GNSRHYGLKPDTFQDPRAGDCLGSNGRTYTDY-LYCSAVD 149

>MUC13_RAT (P97881) Mucin-13 precursor|
          Length = 547

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 25/73 (34%), Positives = 36/73 (49%)
 Frame = +1

Query: 130 TASRTVR*STSMLSQGTWKWPWICTAGCRRSASRPIHSPTAPWSTASEKGASSRPPTSFS 309
           T + T   STS  + GT + P         S S P  + T P STAS+   +++PP   S
Sbjct: 93  TTTATQPTSTSFQTPGTTQLP--------SSTSTPTTTATQPTSTASQTPGTTQPPGGAS 144

Query: 310 AR*STTGARPTWS 348
           +  +TT  +PT S
Sbjct: 145 SP-TTTVTQPTGS 156

>1A1D_PYRAB (Q9V2L2) Putative 1-aminocyclopropane-1-carboxylate deaminase (EC|
           3.5.99.7) (ACC deaminase)
          Length = 330

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 24/83 (28%), Positives = 41/83 (49%)
 Frame = +3

Query: 42  RIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLIDIHAKSGYLEVAMDLYGRMQEV 221
           RI  A      ++ A +V EE++G G +P  +       +    GY+    +LY +++++
Sbjct: 123 RIYEADNSWELMKVAEEVAEELKGEGKKPYIIPPGGASPV-GTLGYIRGVGELYTQVKKL 181

Query: 222 GLSPDTFTYSAVVNCLGKGGQLA 290
           GL  DT     VV+ +G GG  A
Sbjct: 182 GLRIDT-----VVDAVGSGGTYA 199

>GYRB_BARBA (P94281) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 692

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +3

Query: 276 GGQLAAAYKLFCEMIDNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQIAGFR--PDK 449
           G    A + LF E+IDN     +  Y  +I +   + NY  V    R + I      PDK
Sbjct: 77  GTDSKALHHLFSEIIDNAMDEAVAGYADLIDITLDSNNYLTVTDNGRGIPIENHPQIPDK 136

Query: 450 ITYSIVMEVLGHCGHLD 500
            T  ++M  L   G  D
Sbjct: 137 STLEVIMTHLHSGGKFD 153

>CFAH_MOUSE (P06909) Complement factor H precursor (Protein beta-1-H)|
          Length = 1234

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
 Frame = +3

Query: 132 RVTYCTLIDIHAKSGYLEVAMDLYGRMQEV------GLSPDTFTYSAVVNCLGKGGQLAA 293
           R+  C+  DIH  +G+L  +  +Y   +E       G   +T   S  + CL  G     
Sbjct: 444 RIKTCSASDIHIDNGFLSESSSIYALNRETSYRCKQGYVTNTGEISGSITCLQNGWSPQP 503

Query: 294 AYKLFCEM--IDNGCTPNLVTY 353
           +    C+M   +N  T N  T+
Sbjct: 504 SCIKSCDMPVFENSITKNTRTW 525

>PCRB_SULAC (Q4JAS3) Protein pcrB homolog|
          Length = 257

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 434 PSDLH-VSVELDDIVIVPRLGLQGNYYVVGDQVGRAPVVDHLAEKLVGGRELAPFSEAVD 258
           PS+++ +S + D I+ +  L     YY+VG Q+  AP++     K +G   L      + 
Sbjct: 83  PSNVNLISNKADAILFLSLLNSDDLYYIVGAQIVAAPII-----KRIGLEVLPTAYLIIG 137

Query: 257 HGAVGECIGR 228
           HG     IGR
Sbjct: 138 HGGTAGHIGR 147

>CI055_HUMAN (Q5VZ89) Protein C9orf55|
          Length = 1620

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 162 HAKSGYLEVAMDLYGRMQEVGLSP-DTFTYSAVVNCLGKGGQLAAAYKLFCEMIDNGCTP 338
           H K   L+ A D+  +M++  + P D   Y  V+   G  G    A ++  EM      P
Sbjct: 505 HPKVRALQQAYDVLIKMRKTDVDPLDEVCYRVVMQLCGLWGHPVLAVRVLFEMKTARIKP 564

Query: 339 NLVTY 353
           N +TY
Sbjct: 565 NAITY 569

>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1230

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 165 AKSGYLEVAMDLYGRMQEVGLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMI 320
           A+ G  +  + +   +++ GL+PD  +Y+A + C+G+  Q A   +   E +
Sbjct: 272 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 323

>HMD_METVO (Q50840) 5,10-methenyltetrahydromethanopterin hydrogenase (EC|
           1.12.98.2) (H(2)-forming
           N(5),N(10)-methylenetetrahydromethanopterin
           dehydrogenase)
           (N(5),N(10)-methenyltetrahydromethanopterin hydrogenase)
           (H(2)-dependent methylene-H(4)MPT dehydro
          Length = 343

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 449 LVGAEPSDLHVSVELDDIVIVPRLGLQGNYYVVGDQVGRAPVVD-HLAEK 303
           L+GAE   LH+  E+D+IVI      +GN  VV D    A V++ HLA K
Sbjct: 45  LMGAEL--LHLVNEIDEIVIADPCFAEGNEMVVLDNFDYAKVMEAHLAGK 92

>SYI_GEOSL (Q747X9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 923

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 386 PRLGLQGNYYVVGDQVGRAPVVDHLAEKLVGGRELAPFSEAVDHGAVGECIGRE 225
           P LG   N Y+ G    R      L    VG R +AP+ E + HG V +  GR+
Sbjct: 549 PELGSPANMYLEGSDQHRGWFHSSLLAS-VGTRGVAPYREVLTHGFVVDGSGRK 601

>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid|
           transporter 1) (Solute carrier family 36 member 1)
          Length = 475

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 222 GLSPDTFTYSAVVNCLGKGGQLAAAYKLFCEMI 320
           G+SP T T  A+++ LG  G +   Y+  CE+I
Sbjct: 427 GISPLTVTKDALISILGFVGFVVGTYESLCELI 459

>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 23/102 (22%), Positives = 35/102 (34%)
 Frame = +1

Query: 37  TTE*YTLTAVQTI*GXXXXXXXXXXEPVTSLTASRTVR*STSMLSQGTWKWPWICTAGCR 216
           TT   T T   T                ++ T++     STS  +  +   P        
Sbjct: 253 TTTAATTTGSPTSGSTSTTGASTSTPSASTATSATPTSTSTSAAATTSTPTPTSAATSAE 312

Query: 217 RSASRPIHSPTAPWSTASEKGASSRPPTSFSAR*STTGARPT 342
            +   P  +PT   +T SE   ++  P S +   STT A  T
Sbjct: 313 STTEAPTSTPTTDTTTPSEATTATTSPESTTVSASTTSATTT 354

>SYS_STRA5 (P67566) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 425

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
 Frame = +3

Query: 108 EGAGYQPDRVTYCTLIDIHAKSGYLEVAM-------DLYGRMQEVGLSPDTF 242
           +G G + +R  Y  ++D HAK GY EV          ++G  Q      DTF
Sbjct: 167 KGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTF 218

>SYS_STRA3 (P67565) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 425

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
 Frame = +3

Query: 108 EGAGYQPDRVTYCTLIDIHAKSGYLEVAM-------DLYGRMQEVGLSPDTF 242
           +G G + +R  Y  ++D HAK GY EV          ++G  Q      DTF
Sbjct: 167 KGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTF 218

>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 23/102 (22%), Positives = 35/102 (34%)
 Frame = +1

Query: 37  TTE*YTLTAVQTI*GXXXXXXXXXXEPVTSLTASRTVR*STSMLSQGTWKWPWICTAGCR 216
           TT   T T   T                ++ T++     STS  +  +   P        
Sbjct: 322 TTTAATTTGSPTSGSTSTTGASTSTPSASTATSATPTSTSTSAAATTSTPTPTSAATSAE 381

Query: 217 RSASRPIHSPTAPWSTASEKGASSRPPTSFSAR*STTGARPT 342
            +   P  +PT   +T SE   ++  P S +   STT A  T
Sbjct: 382 STTEAPTSTPTTDTTTPSEATTATTSPESTTVSASTTSATTT 423


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,518,405
Number of Sequences: 219361
Number of extensions: 1928741
Number of successful extensions: 6607
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 6147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6574
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)