Clone Information

BLAST Search Result

Clone Name	bart18g01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	200	4e-48
2	emb\|AL928743.1\|CNS08CBG Oryza sativa chromosome 12, . BAC OSJNBb...	200	4e-48
3	dbj\|AK073506.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	200	4e-48
4	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	200	4e-48
5	emb\|AL732378.3\|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa...	200	4e-48
6	emb\|AL731762.2\|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119...	200	4e-48
7	dbj\|AK104070.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	192	9e-46
8	ref\|NM_106133.1\| Arabidopsis thaliana ATP binding / damaged DNA ...	44	0.49
9	gb\|AC008263.2\|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 ...	44	0.49
10	emb\|AL611969.15\| Mouse DNA sequence from clone RP23-392K10 on ch...	44	0.49
11	ref\|NM_191511.1\| Oryza sativa (japonica cultivar-group), predic...	42	1.9
12	gb\|AF016606.1\| Unidentified bacterium dinitrogenase reductase (n...	42	1.9
13	ref\|XM_963964.1\| PREDICTED: Tribolium castaneum similar to CG137...	42	1.9
14	gb\|AC164561.2\| Mus musculus BAC clone RP23-187G5 from chromosome...	42	1.9
15	gb\|AE005913.1\| Caulobacter crescentus CB15 section 239 of 359 of...	42	1.9
16	gb\|AC149489.2\| Medicago truncatula chromosome 2 BAC clone mth2-2...	42	1.9
17	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.9
18	dbj\|AP003368.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.9
19	dbj\|AK067606.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.9
20	emb\|BX293548.5\| Mouse DNA sequence from clone RP23-417K1 on chro...	42	1.9
21	emb\|CT033780.10\| Mouse DNA sequence from clone RP24-329E14 on ch...	42	1.9
22	gb\|AE017344.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	7.7
23	ref\|XM_360432.1\| Magnaporthe grisea 70-15 hypothetical protein (...	40	7.7
24	gb\|AC141563.3\| Mus musculus BAC clone RP23-410M22 from chromosom...	40	7.7
25	ref\|XM_752857.1\| Ustilago maydis 521 hypothetical protein (UM018...	40	7.7
26	ref\|XM_824652.1\| Trypanosoma brucei TREU927 hypothetical protein...	40	7.7
27	ref\|XM_570270.1\| Cryptococcus neoformans var. neoformans JEC21 h...	40	7.7
28	gb\|AC118695.10\| Mus musculus chromosome 19, clone RP24-62C10, co...	40	7.7
29	emb\|CR626927.1\| Bacteroides fragilis NCTC 9343, complete genome	40	7.7
30	emb\|AJ579894.1\|PSP579894 Pseudomonas sp. Y2 paa2 gene cluster fo...	40	7.7
31	gb\|AC011333.7\| Homo sapiens chromosome 5 clone CTC-229L21, compl...	40	7.7
32	gb\|AY885277.1\| Sarcocystis neurona clone Sn6 microsatellite sequ...	40	7.7
33	gb\|AC099699.16\| Mus musculus chromosome 7, clone RP23-32A8, comp...	40	7.7
34	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	40	7.7
35	dbj\|AP006841.1\| Bacteroides fragilis YCH46 DNA, complete genome	40	7.7
36	emb\|AL928757.3\|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb...	40	7.7
37	dbj\|BS000230.1\| Pan troglodytes chromosome 22 clone:PTB-105H12, ...	40	7.7
38	dbj\|AK101013.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.7
39	dbj\|AK099985.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.7
40	emb\|CT573326.1\| Pseudomonas entomophila str. L48 chromosome,comp...	40	7.7
41	gb\|AE015451.1\| Pseudomonas putida KT2440 complete genome	40	7.7
42	emb\|AL732377.4\|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa...	40	7.7

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  200 bits (101), Expect = 4e-48
 Identities = 431/541 (79%)
 Strand = Plus / Minus

                                                                            
Query: 13       actgcaagccaaccgtggtgacatacaacagaataatacacgcttacggccgtgcaaact 72
                ||||||| ||||| || || |||||||||||||||||||| || || || |||||||| |
Sbjct: 27436489 actgcaaaccaactgttgtaacatacaacagaataatacatgcatatggtcgtgcaaatt 27436430

                                                                            
Query: 73       atctgagggaggctgtcaaggtcttcgaggagatggagggagccggttaccagcctgacc 132
                |||| || |||||||| || || |||||||||||| ||  |||||||||  |||| || |
Sbjct: 27436429 atctaagagaggctgttaaagtattcgaggagatgcagaaagccggttatgagccagatc 27436370

                                                                            
Query: 133      gcgtcacgtactgtacgctgatcgacatccatgctaagtcagggtacctggaagtggcca 192
                | || || || |||||  |||| || |||||||||||    || ||||||||| | || |
Sbjct: 27436369 gggttacatattgtacattgattgatatccatgctaaaggtggatacctggaatttgcaa 27436310

                                                                            
Query: 193      tggatctgtacggcaggatgcaggaggtcggcctctcgcccgatacattcacctacagcg 252
                ||||| | ||   ||||||||| || || || || || || ||||| ||||| ||||| |
Sbjct: 27436309 tggatttatataccaggatgcaagaagtagggctgtcaccagatactttcacgtacagtg 27436250

                                                                            
Query: 253      ccgtggtcaactgcctcggaaaagggggccagctcgcggccgcctacaagcttttctgcg 312
                || |||| || ||||| |||||||| || || || || || || || ||||||||||| |
Sbjct: 27436249 ccatggttaattgccttggaaaaggtggtcacctggcagctgcttataagcttttctgtg 27436190

                                                                            
Query: 313      agatgatcgacaacgggtgcacgcccaacctggtcacctacaacataataattgccctgc 372
                ||||| | || || || ||||| || ||||| || || ||||||||||| ||||| || |
Sbjct: 27436189 agatggttgaaaatggctgcacacctaacctagttacatacaacataatgattgctcttc 27436130

                                                                            
Query: 373      aggccaaggcgaggaactatgacaatgtcgtcaagctctacagagacatgcagatcgctg 432
                ||||||| || || || ||||| ||||| || ||||| ||||  ||||||||| | || |
Sbjct: 27436129 aggccaaagcaagaaattatgaaaatgttgtgaagctgtacaaggacatgcaggttgccg 27436070

                                                                            
Query: 433      ggttccgccccgacaagataacctacagcatcgtcatggaggttcttggtcactgtggtc 492
                |||| || || ||||| ||||| ||||| || |||||||| ||||||||||| |||||||
Sbjct: 27436069 ggtttcgtcctgacaaaataacatacagtattgtcatggaagttcttggtcattgtggtc 27436010

                                                                            
Query: 493      acctggacgaggccgaggccgtcttcctcgagatgaggcgcgactgggctcccgatgagc 552
                | ||||| ||||| ||||| || ||| | ||||||||||  ||||||||||| |||||||
Sbjct: 27436009 atctggatgaggctgaggctgtgttcattgagatgaggcatgactgggctcctgatgagc 27435950

                 
Query: 553      c 553
                |
Sbjct: 27435949 c 27435949



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 340      acctggtcacctacaacata 359
                ||||||||||||||||||||
Sbjct: 20850929 acctggtcacctacaacata 20850948

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>emb|AL928743.1|CNS08CBG Oryza sativa chromosome 12, . BAC OSJNBb0011N16 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 55237

 Score =  200 bits (101), Expect = 4e-48
 Identities = 431/541 (79%)
 Strand = Plus / Plus

                                                                         
Query: 13    actgcaagccaaccgtggtgacatacaacagaataatacacgcttacggccgtgcaaact 72
             ||||||| ||||| || || |||||||||||||||||||| || || || |||||||| |
Sbjct: 45329 actgcaaaccaactgttgtaacatacaacagaataatacatgcatatggtcgtgcaaatt 45388

                                                                         
Query: 73    atctgagggaggctgtcaaggtcttcgaggagatggagggagccggttaccagcctgacc 132
             |||| || |||||||| || || |||||||||||| ||  |||||||||  |||| || |
Sbjct: 45389 atctaagagaggctgttaaagtattcgaggagatgcagaaagccggttatgagccagatc 45448

                                                                         
Query: 133   gcgtcacgtactgtacgctgatcgacatccatgctaagtcagggtacctggaagtggcca 192
             | || || || |||||  |||| || |||||||||||    || ||||||||| | || |
Sbjct: 45449 gggttacatattgtacattgattgatatccatgctaaaggtggatacctggaatttgcaa 45508

                                                                         
Query: 193   tggatctgtacggcaggatgcaggaggtcggcctctcgcccgatacattcacctacagcg 252
             ||||| | ||   ||||||||| || || || || || || ||||| ||||| ||||| |
Sbjct: 45509 tggatttatataccaggatgcaagaagtagggctgtcaccagatactttcacgtacagtg 45568

                                                                         
Query: 253   ccgtggtcaactgcctcggaaaagggggccagctcgcggccgcctacaagcttttctgcg 312
             || |||| || ||||| |||||||| || || || || || || || ||||||||||| |
Sbjct: 45569 ccatggttaattgccttggaaaaggtggtcacctggcagctgcttataagcttttctgtg 45628

                                                                         
Query: 313   agatgatcgacaacgggtgcacgcccaacctggtcacctacaacataataattgccctgc 372
             ||||| | || || || ||||| || ||||| || || ||||||||||| ||||| || |
Sbjct: 45629 agatggttgaaaatggctgcacacctaacctagttacatacaacataatgattgctcttc 45688

                                                                         
Query: 373   aggccaaggcgaggaactatgacaatgtcgtcaagctctacagagacatgcagatcgctg 432
             ||||||| || || || ||||| ||||| || ||||| ||||  ||||||||| | || |
Sbjct: 45689 aggccaaagcaagaaattatgaaaatgttgtgaagctgtacaaggacatgcaggttgccg 45748

                                                                         
Query: 433   ggttccgccccgacaagataacctacagcatcgtcatggaggttcttggtcactgtggtc 492
             |||| || || ||||| ||||| ||||| || |||||||| ||||||||||| |||||||
Sbjct: 45749 ggtttcgtcctgacaaaataacatacagtattgtcatggaagttcttggtcattgtggtc 45808

                                                                         
Query: 493   acctggacgaggccgaggccgtcttcctcgagatgaggcgcgactgggctcccgatgagc 552
             | ||||| ||||| ||||| || ||| | ||||||||||  ||||||||||| |||||||
Sbjct: 45809 atctggatgaggctgaggctgtgttcattgagatgaggcatgactgggctcctgatgagc 45868

              
Query: 553   c 553
             |
Sbjct: 45869 c 45869

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>dbj|AK073506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044K21, full
            insert sequence
          Length = 3154

 Score =  200 bits (101), Expect = 4e-48
 Identities = 431/541 (79%)
 Strand = Plus / Plus

                                                                        
Query: 13   actgcaagccaaccgtggtgacatacaacagaataatacacgcttacggccgtgcaaact 72
            ||||||| ||||| || || |||||||||||||||||||| || || || |||||||| |
Sbjct: 1559 actgcaaaccaactgttgtaacatacaacagaataatacatgcatatggtcgtgcaaatt 1618

                                                                        
Query: 73   atctgagggaggctgtcaaggtcttcgaggagatggagggagccggttaccagcctgacc 132
            |||| || |||||||| || || |||||||||||| ||  |||||||||  |||| || |
Sbjct: 1619 atctaagagaggctgttaaagtattcgaggagatgcagaaagccggttatgagccagatc 1678

                                                                        
Query: 133  gcgtcacgtactgtacgctgatcgacatccatgctaagtcagggtacctggaagtggcca 192
            | || || || |||||  |||| || |||||||||||    || ||||||||| | || |
Sbjct: 1679 gggttacatattgtacattgattgatatccatgctaaaggtggatacctggaatttgcaa 1738

                                                                        
Query: 193  tggatctgtacggcaggatgcaggaggtcggcctctcgcccgatacattcacctacagcg 252
            ||||| | ||   ||||||||| || || || || || || ||||| ||||| ||||| |
Sbjct: 1739 tggatttatataccaggatgcaagaagtagggctgtcaccagatactttcacgtacagtg 1798

                                                                        
Query: 253  ccgtggtcaactgcctcggaaaagggggccagctcgcggccgcctacaagcttttctgcg 312
            || |||| || ||||| |||||||| || || || || || || || ||||||||||| |
Sbjct: 1799 ccatggttaattgccttggaaaaggtggtcacctggcagctgcttataagcttttctgtg 1858

                                                                        
Query: 313  agatgatcgacaacgggtgcacgcccaacctggtcacctacaacataataattgccctgc 372
            ||||| | || || || ||||| || ||||| || || ||||||||||| ||||| || |
Sbjct: 1859 agatggttgaaaatggctgcacacctaacctagttacatacaacataatgattgctcttc 1918

                                                                        
Query: 373  aggccaaggcgaggaactatgacaatgtcgtcaagctctacagagacatgcagatcgctg 432
            ||||||| || || || ||||| ||||| || ||||| ||||  ||||||||| | || |
Sbjct: 1919 aggccaaagcaagaaattatgaaaatgttgtgaagctgtacaaggacatgcaggttgccg 1978

                                                                        
Query: 433  ggttccgccccgacaagataacctacagcatcgtcatggaggttcttggtcactgtggtc 492
            |||| || || ||||| ||||| ||||| || |||||||| ||||||||||| |||||||
Sbjct: 1979 ggtttcgtcctgacaaaataacatacagtattgtcatggaagttcttggtcattgtggtc 2038

                                                                        
Query: 493  acctggacgaggccgaggccgtcttcctcgagatgaggcgcgactgggctcccgatgagc 552
            | ||||| ||||| ||||| || ||| | ||||||||||  ||||||||||| |||||||
Sbjct: 2039 atctggatgaggctgaggctgtgttcattgagatgaggcatgactgggctcctgatgagc 2098

             
Query: 553  c 553
            |
Sbjct: 2099 c 2099

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  200 bits (101), Expect = 4e-48
 Identities = 431/541 (79%)
 Strand = Plus / Minus

                                                                            
Query: 13       actgcaagccaaccgtggtgacatacaacagaataatacacgcttacggccgtgcaaact 72
                ||||||| ||||| || || |||||||||||||||||||| || || || |||||||| |
Sbjct: 27362089 actgcaaaccaactgttgtaacatacaacagaataatacatgcatatggtcgtgcaaatt 27362030

                                                                            
Query: 73       atctgagggaggctgtcaaggtcttcgaggagatggagggagccggttaccagcctgacc 132
                |||| || |||||||| || || |||||||||||| ||  |||||||||  |||| || |
Sbjct: 27362029 atctaagagaggctgttaaagtattcgaggagatgcagaaagccggttatgagccagatc 27361970

                                                                            
Query: 133      gcgtcacgtactgtacgctgatcgacatccatgctaagtcagggtacctggaagtggcca 192
                | || || || |||||  |||| || |||||||||||    || ||||||||| | || |
Sbjct: 27361969 gggttacatattgtacattgattgatatccatgctaaaggtggatacctggaatttgcaa 27361910

                                                                            
Query: 193      tggatctgtacggcaggatgcaggaggtcggcctctcgcccgatacattcacctacagcg 252
                ||||| | ||   ||||||||| || || || || || || ||||| ||||| ||||| |
Sbjct: 27361909 tggatttatataccaggatgcaagaagtagggctgtcaccagatactttcacgtacagtg 27361850

                                                                            
Query: 253      ccgtggtcaactgcctcggaaaagggggccagctcgcggccgcctacaagcttttctgcg 312
                || |||| || ||||| |||||||| || || || || || || || ||||||||||| |
Sbjct: 27361849 ccatggttaattgccttggaaaaggtggtcacctggcagctgcttataagcttttctgtg 27361790

                                                                            
Query: 313      agatgatcgacaacgggtgcacgcccaacctggtcacctacaacataataattgccctgc 372
                ||||| | || || || ||||| || ||||| || || ||||||||||| ||||| || |
Sbjct: 27361789 agatggttgaaaatggctgcacacctaacctagttacatacaacataatgattgctcttc 27361730

                                                                            
Query: 373      aggccaaggcgaggaactatgacaatgtcgtcaagctctacagagacatgcagatcgctg 432
                ||||||| || || || ||||| ||||| || ||||| ||||  ||||||||| | || |
Sbjct: 27361729 aggccaaagcaagaaattatgaaaatgttgtgaagctgtacaaggacatgcaggttgccg 27361670

                                                                            
Query: 433      ggttccgccccgacaagataacctacagcatcgtcatggaggttcttggtcactgtggtc 492
                |||| || || ||||| ||||| ||||| || |||||||| ||||||||||| |||||||
Sbjct: 27361669 ggtttcgtcctgacaaaataacatacagtattgtcatggaagttcttggtcattgtggtc 27361610

                                                                            
Query: 493      acctggacgaggccgaggccgtcttcctcgagatgaggcgcgactgggctcccgatgagc 552
                | ||||| ||||| ||||| || ||| | ||||||||||  ||||||||||| |||||||
Sbjct: 27361609 atctggatgaggctgaggctgtgttcattgagatgaggcatgactgggctcctgatgagc 27361550

                 
Query: 553      c 553
                |
Sbjct: 27361549 c 27361549



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 340      acctggtcacctacaacata 359
                ||||||||||||||||||||
Sbjct: 20777143 acctggtcacctacaacata 20777162

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>emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa0063N15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109222

 Score =  200 bits (101), Expect = 4e-48
 Identities = 431/541 (79%)
 Strand = Plus / Minus

                                                                         
Query: 13    actgcaagccaaccgtggtgacatacaacagaataatacacgcttacggccgtgcaaact 72
             ||||||| ||||| || || |||||||||||||||||||| || || || |||||||| |
Sbjct: 12403 actgcaaaccaactgttgtaacatacaacagaataatacatgcatatggtcgtgcaaatt 12344

                                                                         
Query: 73    atctgagggaggctgtcaaggtcttcgaggagatggagggagccggttaccagcctgacc 132
             |||| || |||||||| || || |||||||||||| ||  |||||||||  |||| || |
Sbjct: 12343 atctaagagaggctgttaaagtattcgaggagatgcagaaagccggttatgagccagatc 12284

                                                                         
Query: 133   gcgtcacgtactgtacgctgatcgacatccatgctaagtcagggtacctggaagtggcca 192
             | || || || |||||  |||| || |||||||||||    || ||||||||| | || |
Sbjct: 12283 gggttacatattgtacattgattgatatccatgctaaaggtggatacctggaatttgcaa 12224

                                                                         
Query: 193   tggatctgtacggcaggatgcaggaggtcggcctctcgcccgatacattcacctacagcg 252
             ||||| | ||   ||||||||| || || || || || || ||||| ||||| ||||| |
Sbjct: 12223 tggatttatataccaggatgcaagaagtagggctgtcaccagatactttcacgtacagtg 12164

                                                                         
Query: 253   ccgtggtcaactgcctcggaaaagggggccagctcgcggccgcctacaagcttttctgcg 312
             || |||| || ||||| |||||||| || || || || || || || ||||||||||| |
Sbjct: 12163 ccatggttaattgccttggaaaaggtggtcacctggcagctgcttataagcttttctgtg 12104

                                                                         
Query: 313   agatgatcgacaacgggtgcacgcccaacctggtcacctacaacataataattgccctgc 372
             ||||| | || || || ||||| || ||||| || || ||||||||||| ||||| || |
Sbjct: 12103 agatggttgaaaatggctgcacacctaacctagttacatacaacataatgattgctcttc 12044

                                                                         
Query: 373   aggccaaggcgaggaactatgacaatgtcgtcaagctctacagagacatgcagatcgctg 432
             ||||||| || || || ||||| ||||| || ||||| ||||  ||||||||| | || |
Sbjct: 12043 aggccaaagcaagaaattatgaaaatgttgtgaagctgtacaaggacatgcaggttgccg 11984

                                                                         
Query: 433   ggttccgccccgacaagataacctacagcatcgtcatggaggttcttggtcactgtggtc 492
             |||| || || ||||| ||||| ||||| || |||||||| ||||||||||| |||||||
Sbjct: 11983 ggtttcgtcctgacaaaataacatacagtattgtcatggaagttcttggtcattgtggtc 11924

                                                                         
Query: 493   acctggacgaggccgaggccgtcttcctcgagatgaggcgcgactgggctcccgatgagc 552
             | ||||| ||||| ||||| || ||| | ||||||||||  ||||||||||| |||||||
Sbjct: 11923 atctggatgaggctgaggctgtgttcattgagatgaggcatgactgggctcctgatgagc 11864

              
Query: 553   c 553
             |
Sbjct: 11863 c 11863

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>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 124605

 Score =  200 bits (101), Expect = 4e-48
 Identities = 431/541 (79%)
 Strand = Plus / Minus

                                                                          
Query: 13     actgcaagccaaccgtggtgacatacaacagaataatacacgcttacggccgtgcaaact 72
              ||||||| ||||| || || |||||||||||||||||||| || || || |||||||| |
Sbjct: 104809 actgcaaaccaactgttgtaacatacaacagaataatacatgcatatggtcgtgcaaatt 104750

                                                                          
Query: 73     atctgagggaggctgtcaaggtcttcgaggagatggagggagccggttaccagcctgacc 132
              |||| || |||||||| || || |||||||||||| ||  |||||||||  |||| || |
Sbjct: 104749 atctaagagaggctgttaaagtattcgaggagatgcagaaagccggttatgagccagatc 104690

                                                                          
Query: 133    gcgtcacgtactgtacgctgatcgacatccatgctaagtcagggtacctggaagtggcca 192
              | || || || |||||  |||| || |||||||||||    || ||||||||| | || |
Sbjct: 104689 gggttacatattgtacattgattgatatccatgctaaaggtggatacctggaatttgcaa 104630

                                                                          
Query: 193    tggatctgtacggcaggatgcaggaggtcggcctctcgcccgatacattcacctacagcg 252
              ||||| | ||   ||||||||| || || || || || || ||||| ||||| ||||| |
Sbjct: 104629 tggatttatataccaggatgcaagaagtagggctgtcaccagatactttcacgtacagtg 104570

                                                                          
Query: 253    ccgtggtcaactgcctcggaaaagggggccagctcgcggccgcctacaagcttttctgcg 312
              || |||| || ||||| |||||||| || || || || || || || ||||||||||| |
Sbjct: 104569 ccatggttaattgccttggaaaaggtggtcacctggcagctgcttataagcttttctgtg 104510

                                                                          
Query: 313    agatgatcgacaacgggtgcacgcccaacctggtcacctacaacataataattgccctgc 372
              ||||| | || || || ||||| || ||||| || || ||||||||||| ||||| || |
Sbjct: 104509 agatggttgaaaatggctgcacacctaacctagttacatacaacataatgattgctcttc 104450

                                                                          
Query: 373    aggccaaggcgaggaactatgacaatgtcgtcaagctctacagagacatgcagatcgctg 432
              ||||||| || || || ||||| ||||| || ||||| ||||  ||||||||| | || |
Sbjct: 104449 aggccaaagcaagaaattatgaaaatgttgtgaagctgtacaaggacatgcaggttgccg 104390

                                                                          
Query: 433    ggttccgccccgacaagataacctacagcatcgtcatggaggttcttggtcactgtggtc 492
              |||| || || ||||| ||||| ||||| || |||||||| ||||||||||| |||||||
Sbjct: 104389 ggtttcgtcctgacaaaataacatacagtattgtcatggaagttcttggtcattgtggtc 104330

                                                                          
Query: 493    acctggacgaggccgaggccgtcttcctcgagatgaggcgcgactgggctcccgatgagc 552
              | ||||| ||||| ||||| || ||| | ||||||||||  ||||||||||| |||||||
Sbjct: 104329 atctggatgaggctgaggctgtgttcattgagatgaggcatgactgggctcctgatgagc 104270

               
Query: 553    c 553
              |
Sbjct: 104269 c 104269

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>dbj|AK104070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A07, full
           insert sequence
          Length = 1899

 Score =  192 bits (97), Expect = 9e-46
 Identities = 430/541 (79%)
 Strand = Plus / Plus

                                                                       
Query: 13  actgcaagccaaccgtggtgacatacaacagaataatacacgcttacggccgtgcaaact 72
           ||||||| ||||| || || |||||||||||||||||||| || || || |||||||| |
Sbjct: 289 actgcaaaccaactgttgtaacatacaacagaataatacatgcatatggtcgtgcaaatt 348

                                                                       
Query: 73  atctgagggaggctgtcaaggtcttcgaggagatggagggagccggttaccagcctgacc 132
           |||| || |||||||| || || |||||||||||| ||  |||||||||  |||| || |
Sbjct: 349 atctaagagaggctgttaaagtattcgaggagatgcagaaagccggttatgagccagatc 408

                                                                       
Query: 133 gcgtcacgtactgtacgctgatcgacatccatgctaagtcagggtacctggaagtggcca 192
           | || || || |||||  |||| || |||||||||||    || ||||||||| | || |
Sbjct: 409 gggttacatattgtacattgattgatatccatgctaaaggtggatacctggaatttgcaa 468

                                                                       
Query: 193 tggatctgtacggcaggatgcaggaggtcggcctctcgcccgatacattcacctacagcg 252
           ||||| | ||   ||||||||| || || || || || || ||||| ||||| ||||| |
Sbjct: 469 tggatttatataccaggatgcaagaagtagggctgtcaccagatactttcacgtacagtg 528

                                                                       
Query: 253 ccgtggtcaactgcctcggaaaagggggccagctcgcggccgcctacaagcttttctgcg 312
           || |||| || ||||| |||||||| || || || || || || || ||||||||||| |
Sbjct: 529 ccatggttaattgccttggaaaaggtggtcacctggcagctgcttataagcttttctgtg 588

                                                                       
Query: 313 agatgatcgacaacgggtgcacgcccaacctggtcacctacaacataataattgccctgc 372
            |||| | || || || ||||| || ||||| || || ||||||||||| ||||| || |
Sbjct: 589 ggatggttgaaaatggctgcacacctaacctagttacatacaacataatgattgctcttc 648

                                                                       
Query: 373 aggccaaggcgaggaactatgacaatgtcgtcaagctctacagagacatgcagatcgctg 432
           ||||||| || || || ||||| ||||| || ||||| ||||  ||||||||| | || |
Sbjct: 649 aggccaaagcaagaaattatgaaaatgttgtgaagctgtacaaggacatgcaggttgccg 708

                                                                       
Query: 433 ggttccgccccgacaagataacctacagcatcgtcatggaggttcttggtcactgtggtc 492
           |||| || || ||||| ||||| ||||| || |||||||| ||||||||||| |||||||
Sbjct: 709 ggtttcgtcctgacaaaataacatacagtattgtcatggaagttcttggtcattgtggtc 768

                                                                       
Query: 493 acctggacgaggccgaggccgtcttcctcgagatgaggcgcgactgggctcccgatgagc 552
           | ||||| ||||| ||||| || ||| | ||||||||||  ||||||||||| |||||||
Sbjct: 769 atctggatgaggctgaggctgtgttcattgagatgaggcatgactgggctcctgatgagc 828

            
Query: 553 c 553
           |
Sbjct: 829 c 829

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>ref|NM_106133.1| Arabidopsis thaliana ATP binding / damaged DNA binding AT1G74750
            mRNA, complete cds
          Length = 2568

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 70/86 (81%)
 Strand = Plus / Plus

                                                                        
Query: 405  aagctctacagagacatgcagatcgctgggttccgccccgacaagataacctacagcatc 464
            |||||||||||||||||||| |  || ||||| |  || |||||  | |||||||| || 
Sbjct: 1558 aagctctacagagacatgcaaaatgccgggtttcaacctgacaaagtgacctacagtatt 1617

                                      
Query: 465  gtcatggaggttcttggtcactgtgg 490
            || |||||||| ||||| ||||||||
Sbjct: 1618 gttatggaggtacttggacactgtgg 1643



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                          
Query: 124  agcctgaccgcgtcacgtactgtacgctgatcgacatccatgctaa 169
            |||||||||| || || |||||||| ||||| || |||||||||||
Sbjct: 1277 agcctgaccgtgtaacttactgtaccctgatagatatccatgctaa 1322

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>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence
          Length = 115721

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 124   agcctgaccgcgtcacgtactgtacgctgatcgacatccatgctaa 169
             |||||||||| || || |||||||| ||||| || |||||||||||
Sbjct: 86954 agcctgaccgtgtaacttactgtaccctgatagatatccatgctaa 86909



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                         
Query: 405   aagctctacagagacatgcagatcgctgggttccgccccgacaagataacctacagcatc 464
             |||||||||||||||||||| |  || ||||| |  || |||||  | |||||||| || 
Sbjct: 86673 aagctctacagagacatgcaaaatgccgggtttcaacctgacaaagtgacctacagtatt 86614

                                       
Query: 465   gtcatggaggttcttggtcactgtgg 490
             || |||||||| ||||| ||||||||
Sbjct: 86613 gttatggaggtacttggacactgtgg 86588

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>emb|AL611969.15| Mouse DNA sequence from clone RP23-392K10 on chromosome 4, complete
              sequence
          Length = 174305

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 413    cagagacatgcagatcgctgggttcc 438
              |||||||||||||||| |||||||||
Sbjct: 130925 cagagacatgcagatccctgggttcc 130900

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>ref|NM_191511.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2055

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 327 gggtgcacgcccaacctggtcacctacaa 355
           ||||||||||||||| | |||||||||||
Sbjct: 628 gggtgcacgcccaacattgtcacctacaa 656

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>gb|AF016606.1| Unidentified bacterium dinitrogenase reductase (nifH) gene, partial
           cds
          Length = 327

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 394 acaatgtcgtcaagctctaca 414
           |||||||||||||||||||||
Sbjct: 92  acaatgtcgtcaagctctaca 72

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>ref|XM_963964.1| PREDICTED: Tribolium castaneum similar to CG13776-PA (LOC657508),
           mRNA
          Length = 1422

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 316 tgatcgacaacgggtgcacgcccaa 340
           ||||||| |||||||||||||||||
Sbjct: 653 tgatcgataacgggtgcacgcccaa 677

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>gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome 12, complete sequence
          Length = 210186

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 412   acagagacatgcagatcgctgggtt 436
             ||||||||||||||||| |||||||
Sbjct: 39011 acagagacatgcagatctctgggtt 38987

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>gb|AE005913.1| Caulobacter crescentus CB15 section 239 of 359 of the complete genome
          Length = 13785

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 495   ctggacgaggccgaggccgtcttcc 519
             ||||||||||||||||||| |||||
Sbjct: 11526 ctggacgaggccgaggccggcttcc 11550

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>gb|AC149489.2| Medicago truncatula chromosome 2 BAC clone mth2-24b4, complete
            sequence
          Length = 110753

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 477  cttggtcactgtggtcacctggacgaggc 505
            ||||||||||||||||| ||||| |||||
Sbjct: 8581 cttggtcactgtggtcaactggatgaggc 8609

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 327      gggtgcacgcccaacctggtcacctacaa 355
                ||||||||||||||| | |||||||||||
Sbjct: 33176593 gggtgcacgcccaacattgtcacctacaa 33176621

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>dbj|AP003368.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1100D10
          Length = 152997

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 327    gggtgcacgcccaacctggtcacctacaa 355
              ||||||||||||||| | |||||||||||
Sbjct: 113503 gggtgcacgcccaacattgtcacctacaa 113531

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>dbj|AK067606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112M07, full
           insert sequence
          Length = 2601

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 327 gggtgcacgcccaacctggtcacctacaa 355
           ||||||||||||||| | |||||||||||
Sbjct: 748 gggtgcacgcccaacattgtcacctacaa 776

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>emb|BX293548.5| Mouse DNA sequence from clone RP23-417K1 on chromosome 2, complete
              sequence
          Length = 195079

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 413    cagagacatgcagatcgctgg 433
              |||||||||||||||||||||
Sbjct: 103461 cagagacatgcagatcgctgg 103481

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>emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on chromosome 12, complete
              sequence
          Length = 205515

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 412    acagagacatgcagatcgctgggtt 436
              ||||||||||||||||| |||||||
Sbjct: 121270 acagagacatgcagatctctgggtt 121246

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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
              sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 181    tggaagtggccatggatctgtacg 204
              |||||||||||||| |||||||||
Sbjct: 455258 tggaagtggccatgcatctgtacg 455235

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>ref|XM_360432.1| Magnaporthe grisea 70-15 hypothetical protein (MG10744.4) partial
           mRNA
          Length = 1890

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 496 tggacgaggccgaggccgtc 515
           ||||||||||||||||||||
Sbjct: 560 tggacgaggccgaggccgtc 579

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>gb|AC141563.3| Mus musculus BAC clone RP23-410M22 from chromosome 6, complete sequence
          Length = 186983

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   tggaagtggccatggatctg 200
             ||||||||||||||||||||
Sbjct: 35067 tggaagtggccatggatctg 35086

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>ref|XM_752857.1| Ustilago maydis 521 hypothetical protein (UM01803.1) partial mRNA
          Length = 2217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 cacgcccaacctggtcacct 351
           ||||||||||||||||||||
Sbjct: 630 cacgcccaacctggtcacct 649

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>ref|XM_824652.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.8640)
            partial mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 369  ctgcaggccaaggcgaggaa 388
            ||||||||||||||||||||
Sbjct: 1441 ctgcaggccaaggcgaggaa 1460

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>ref|XM_570270.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CND01690) partial mRNA
          Length = 2510

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 181  tggaagtggccatggatctgtacg 204
            |||||||||||||| |||||||||
Sbjct: 1222 tggaagtggccatgcatctgtacg 1245

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>gb|AC118695.10| Mus musculus chromosome 19, clone RP24-62C10, complete sequence
          Length = 261979

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 473    ggttcttggtcactgtggtcacct 496
              |||||||||||||||||| |||||
Sbjct: 111622 ggttcttggtcactgtggccacct 111645

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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      tcttcgaggagatggaggga 113
               ||||||||||||||||||||
Sbjct: 2995309 tcttcgaggagatggaggga 2995328

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>emb|AJ579894.1|PSP579894 Pseudomonas sp. Y2 paa2 gene cluster for phenylacetate degradation
          Length = 21562

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   caacctggtcacctacaaca 357
             ||||||||||||||||||||
Sbjct: 17430 caacctggtcacctacaaca 17449

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>gb|AC011333.7| Homo sapiens chromosome 5 clone CTC-229L21, complete sequence
          Length = 159964

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 420   atgcagatcgctgggttccgcccc 443
             ||||||||||||||| ||||||||
Sbjct: 61605 atgcagatcgctgggctccgcccc 61582

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>gb|AY885277.1| Sarcocystis neurona clone Sn6 microsatellite sequence
          Length = 306

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 109 agggagccggttaccagcct 128
           ||||||||||||||||||||
Sbjct: 148 agggagccggttaccagcct 129

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>gb|AC099699.16| Mus musculus chromosome 7, clone RP23-32A8, complete sequence
          Length = 195263

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    ggtgcacgcccaacctggtc 347
              ||||||||||||||||||||
Sbjct: 121418 ggtgcacgcccaacctggtc 121399

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     ggacgaggccgaggccgtct 516
               ||||||||||||||||||||
Sbjct: 1470308 ggacgaggccgaggccgtct 1470289

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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      tcttcgaggagatggaggga 113
               ||||||||||||||||||||
Sbjct: 2921695 tcttcgaggagatggaggga 2921714

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>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 101075

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   acctggtcacctacaacata 359
             ||||||||||||||||||||
Sbjct: 52659 acctggtcacctacaacata 52678

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>dbj|BS000230.1| Pan troglodytes chromosome 22 clone:PTB-105H12, map 22, complete
             sequences
          Length = 242704

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   ccctgcaggccaaggcgagg 386
             ||||||||||||||||||||
Sbjct: 96139 ccctgcaggccaaggcgagg 96158

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>dbj|AK101013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149B10, full
           insert sequence
          Length = 1875

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 acctggtcacctacaacata 359
           ||||||||||||||||||||
Sbjct: 659 acctggtcacctacaacata 678

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>dbj|AK099985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130A06, full
           insert sequence
          Length = 1889

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 acctggtcacctacaacata 359
           ||||||||||||||||||||
Sbjct: 659 acctggtcacctacaacata 678

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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 338     caacctggtcacctacaaca 357
               ||||||||||||||||||||
Sbjct: 2943356 caacctggtcacctacaaca 2943375

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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 338     caacctggtcacctacaaca 357
               ||||||||||||||||||||
Sbjct: 3706357 caacctggtcacctacaaca 3706338

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>emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa0036E08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 149022

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    acctggtcacctacaacata 359
              ||||||||||||||||||||
Sbjct: 148770 acctggtcacctacaacata 148789


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,712,278
Number of Sequences: 3902068
Number of extensions: 3712278
Number of successful extensions: 68531
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68159
Number of HSP's gapped (non-prelim): 372
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result