ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart16h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
2dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
3dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
4dbj|AK073715.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
5dbj|AK066906.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
6emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4,... 52 0.002
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
8gb|DQ215021.1| Taeniopygia guttata clone 0058P0001G03 U5 snRNP-s... 40 7.1
9ref|NM_197713.1| Oryza sativa (japonica cultivar-group) putative... 40 7.1
10ref|XM_323880.1| Neurospora crassa OR74A LACCASE PRECURSOR (BENZ... 40 7.1
11ref|XM_951846.1| Neurospora crassa OR74A LACCASE PRECURSOR (BENZ... 40 7.1
12gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 geno... 40 7.1
13gb|AC091143.6| Homo sapiens chromosome 18, clone CTD-3056C12, co... 40 7.1
14gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.1
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
16gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.1
17gb|M18334.1|NEULCCB N.crassa (strain TS) laccase gene, complete cds 40 7.1
18gb|M18333.1|NEULCCA N.crassa (strain OR) laccase gene, complete cds 40 7.1 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                    
Query: 195     atggagctctaccccggataccttgaagaccacttcaacattcacaagcttag 247
               |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 4507207 atggagctttacccgggataccttgaagaccatttcaacatccacaaacttag 4507155
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>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1120_C08
          Length = 150300

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 195   atggagctctaccccggataccttgaagaccacttcaacattcacaagcttag 247
             |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 31055 atggagctttacccgggataccttgaagaccatttcaacatccacaaacttag 31003
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>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0583B06
          Length = 134442

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 195   atggagctctaccccggataccttgaagaccacttcaacattcacaagcttag 247
             |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 73097 atggagctttacccgggataccttgaagaccatttcaacatccacaaacttag 73045
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>dbj|AK073715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059P06, full
           insert sequence
          Length = 2002

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 80/97 (82%), Gaps = 3/97 (3%)
 Strand = Plus / Plus

                                                                       
Query: 194 aatggagctctaccccggataccttgaagaccacttcaacattcacaagcttagcgggac 253
           ||||||||| ||||| || || ||||||||||| || ||||| ||||||||||   | | 
Sbjct: 330 aatggagctttaccctggctatcttgaagaccattttaacatccacaagctta---gtat 386

                                                
Query: 254 cggcggcgcgtccccgccggagtacatgacctcggcg 290
           | || |||| || || |||||||||||||||||||||
Sbjct: 387 cagcagcgcctctcctccggagtacatgacctcggcg 423
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>dbj|AK066906.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091P09, full
           insert sequence
          Length = 2651

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 80/97 (82%), Gaps = 3/97 (3%)
 Strand = Plus / Plus

                                                                       
Query: 194 aatggagctctaccccggataccttgaagaccacttcaacattcacaagcttagcgggac 253
           ||||||||| ||||| || || ||||||||||| || ||||| ||||||||||   | | 
Sbjct: 870 aatggagctttaccctggctatcttgaagaccattttaacatccacaagctta---gtat 926

                                                
Query: 254 cggcggcgcgtccccgccggagtacatgacctcggcg 290
           | || |||| || || |||||||||||||||||||||
Sbjct: 927 cagcagcgcctctcctccggagtacatgacctcggcg 963
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>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13,
             complete sequence
          Length = 123480

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 194   aatggagctctaccccggataccttgaagaccacttcaacattcacaagcttag 247
             ||||||||| ||||| || || ||||||||||| || ||||| |||||||||||
Sbjct: 57220 aatggagctttaccctggctatcttgaagaccattttaacatccacaagcttag 57273



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 270   ccggagtacatgacctcggcg 290
             |||||||||||||||||||||
Sbjct: 60307 ccggagtacatgacctcggcg 60327
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 194      aatggagctctaccccggataccttgaagaccacttcaacattcacaagcttag 247
                ||||||||| ||||| || || ||||||||||| || ||||| |||||||||||
Sbjct: 32440419 aatggagctttaccctggctatcttgaagaccattttaacatccacaagcttag 32440472



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 270      ccggagtacatgacctcggcg 290
                |||||||||||||||||||||
Sbjct: 32443506 ccggagtacatgacctcggcg 32443526
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>gb|DQ215021.1| Taeniopygia guttata clone 0058P0001G03 U5 snRNP-specific 40 kDa
           protein (Prp8-binding)-like mRNA, complete sequence
          Length = 1080

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  gaccagatcatctctggagg 48
           ||||||||||||||||||||
Sbjct: 240 gaccagatcatctctggagg 259
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>ref|NM_197713.1| Oryza sativa (japonica cultivar-group) putative metalloproteinase
           (OSJNBa0010C11.13), mRNA
          Length = 801

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 254 cggcggcgcgtccccgccgg 273
           ||||||||||||||||||||
Sbjct: 465 cggcggcgcgtccccgccgg 446
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>ref|XM_323880.1| Neurospora crassa OR74A LACCASE PRECURSOR (BENZENEDIOL:OXYGEN
           OXIDOREDUCTASE) (URISHIOL OXIDASE) (LACCASE ALLELE OR)
           (NCU04528.1) partial mRNA
          Length = 1860

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 409 agccctacaaggtcgacagc 428
           ||||||||||||||||||||
Sbjct: 926 agccctacaaggtcgacagc 945
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>ref|XM_951846.1| Neurospora crassa OR74A LACCASE PRECURSOR (BENZENEDIOL:OXYGEN
           OXIDOREDUCTASE) (URISHIOL OXIDASE) (LACCASE ALLELE OR)
           (NCU04528.1) partial mRNA
          Length = 1860

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 409 agccctacaaggtcgacagc 428
           ||||||||||||||||||||
Sbjct: 926 agccctacaaggtcgacagc 945
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>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete
              sequence
          Length = 147117

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    cggcggcgcgtccccgccgg 273
              ||||||||||||||||||||
Sbjct: 118573 cggcggcgcgtccccgccgg 118592
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>gb|AC091143.6| Homo sapiens chromosome 18, clone CTD-3056C12, complete sequence
          Length = 104854

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   aagaccacttcaacattcac 239
             ||||||||||||||||||||
Sbjct: 35929 aagaccacttcaacattcac 35910
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 419     ggtcgacagcggcggccagg 438
               ||||||||||||||||||||
Sbjct: 2451534 ggtcgacagcggcggccagg 2451553
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 254      cggcggcgcgtccccgccgg 273
                ||||||||||||||||||||
Sbjct: 21443560 cggcggcgcgtccccgccgg 21443579
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 254      cggcggcgcgtccccgccgg 273
                ||||||||||||||||||||
Sbjct: 21454823 cggcggcgcgtccccgccgg 21454842
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>gb|M18334.1|NEULCCB N.crassa (strain TS) laccase gene, complete cds
          Length = 2656

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 409  agccctacaaggtcgacagc 428
            ||||||||||||||||||||
Sbjct: 1389 agccctacaaggtcgacagc 1408
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>gb|M18333.1|NEULCCA N.crassa (strain OR) laccase gene, complete cds
          Length = 2652

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 409  agccctacaaggtcgacagc 428
            ||||||||||||||||||||
Sbjct: 1372 agccctacaaggtcgacagc 1391


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,879,698
Number of Sequences: 3902068
Number of extensions: 2879698
Number of successful extensions: 46662
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46486
Number of HSP's gapped (non-prelim): 176
length of query: 526
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 503
effective length of database: 17,143,297,704
effective search space: 8623078745112
effective search space used: 8623078745112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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