| Clone Name | bart13g01 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | DHN4_HORVU (P12949) Dehydrin DHN4 (B18) | 105 | 9e-23 | 2 | DHN3_HORVU (P12948) Dehydrin DHN3 (B17) | 63 | 6e-10 | 3 | DHN1_MAIZE (P12950) Dehydrin DHN1 (M3) (RAB-17 protein) | 58 | 2e-08 | 4 | DHR21_ORYSA (P12253) Water stress-inducible protein Rab21 | 54 | 2e-07 | 5 | DH16B_ORYSA (P22911) Dehydrin Rab16B | 46 | 8e-05 | 6 | DHN2_HORVU (P12952) Dehydrin DHN2 (B9) | 45 | 1e-04 | 7 | DH16C_ORYSA (P22912) Dehydrin Rab16C | 45 | 1e-04 | 8 | DHR15_WHEAT (Q00742) Dehydrin Rab15 | 41 | 0.002 | 9 | DHN1_HORVU (P12951) Dehydrin DHN1 (B8) | 40 | 0.006 | 10 | DH16D_ORYSA (P22913) Dehydrin Rab16D | 38 | 0.022 | 11 | PER3_HUMAN (P56645) Period circadian protein 3 (hPER3) | 30 | 4.6 | 12 | PAQR4_HUMAN (Q8N4S7) Progestin and adipoQ receptor family member... | 30 | 6.1 | 13 | LAMA_DROME (Q00174) Laminin alpha chain precursor | 30 | 6.1 |
|---|
>DHN4_HORVU (P12949) Dehydrin DHN4 (B18)| Length = 225 Score = 105 bits (262), Expect = 9e-23 Identities = 51/99 (51%), Positives = 51/99 (51%) Frame = +1 Query: 88 MEYQGQQHGRVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGILHRX 267 MEYQGQQHGRVDEYGNP YQPMRDEHQTGRGILHR Sbjct: 1 MEYQGQQHGRVDEYGNPVAGHGVGTGMGTHGGVGTGAAAGGHYQPMRDEHQTGRGILHRS 60 Query: 268 XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQHN 384 EDDGMG LPGGHGDQQHN Sbjct: 61 GSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGHGDQQHN 99
>DHN3_HORVU (P12948) Dehydrin DHN3 (B17)| Length = 161 Score = 62.8 bits (151), Expect = 6e-10 Identities = 34/93 (36%), Positives = 37/93 (39%) Frame = +1 Query: 100 GQQHGRVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGILHRXXXXX 279 G RVDEYGNP +QP R+EH+ G GIL R Sbjct: 4 GHATNRVDEYGNPVAGHGVGTGMGAHGGVGTGAAAGGHFQPTREEHKAG-GILQRSGSSS 62 Query: 280 XXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQ 378 EDDGMG LPGGHGDQQ Sbjct: 63 SSSSEDDGMGGRRKKGLKDKIKEKLPGGHGDQQ 95
>DHN1_MAIZE (P12950) Dehydrin DHN1 (M3) (RAB-17 protein)| Length = 168 Score = 57.8 bits (138), Expect = 2e-08 Identities = 41/115 (35%), Positives = 46/115 (40%), Gaps = 17/115 (14%) Frame = +1 Query: 88 MEY--QGQQ-HGR---VDEYGNPXXXXXXXXXXXXXXXXXX-----------XXXXXXXY 216 MEY QGQ+ HGR VD+YGNP + Sbjct: 1 MEYGQQGQRGHGRTGHVDQYGNPVGGVEHGTGGMRHGTGTTGGMGQLGEHGGAGMGGGQF 60 Query: 217 QPMRDEHQTGRGILHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQH 381 QP R+EH+TG GILHR EDDGMG LPGGH D QH Sbjct: 61 QPAREEHKTG-GILHRSGSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGHKDDQH 114
>DHR21_ORYSA (P12253) Water stress-inducible protein Rab21| Length = 172 Score = 54.3 bits (129), Expect = 2e-07 Identities = 40/123 (32%), Positives = 47/123 (38%), Gaps = 25/123 (20%) Frame = +1 Query: 88 MEYQGQQHG----RVDEYGNPXXXXX--------------------XXXXXXXXXXXXXX 195 ME+QGQ HG RVDEYGNP Sbjct: 1 MEHQGQ-HGHVTSRVDEYGNPVGTGAGHGQMGTAGMGTHGTTGGMGTHGTTGGMGTHGTT 59 Query: 196 XXXXXXYQPMRDEHQTGRGILHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGH-GD 372 +QPMR+EH+TG G+L R EDDGMG LPGG+ G+ Sbjct: 60 GTGGGQFQPMREEHKTG-GVLQRSGSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGE 118 Query: 373 QQH 381 QQH Sbjct: 119 QQH 121
>DH16B_ORYSA (P22911) Dehydrin Rab16B| Length = 164 Score = 45.8 bits (107), Expect = 8e-05 Identities = 35/109 (32%), Positives = 40/109 (36%), Gaps = 13/109 (11%) Frame = +1 Query: 94 YQGQQHG----RVDEYGNPXXXXXXXXXXXX--------XXXXXXXXXXXXXYQPMRDEH 237 YQGQ HG RVD YGNP +QP R++H Sbjct: 4 YQGQ-HGYGADRVDVYGNPVGAGQYGGGATAPGGGHGAMGMGGHAGAGAGGQFQPAREDH 62 Query: 238 QTGRGILHRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQH 381 +TG GILHR EDDGMG LPGG+ H Sbjct: 63 KTG-GILHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNH 110
>DHN2_HORVU (P12952) Dehydrin DHN2 (B9)| Length = 143 Score = 45.4 bits (106), Expect = 1e-04 Identities = 34/107 (31%), Positives = 40/107 (37%), Gaps = 9/107 (8%) Frame = +1 Query: 88 MEYQGQQH----GRVDEYGNPXXXXXXXXXX-XXXXXXXXXXXXXXXYQPMRDEHQTGRG 252 MEYQGQ +V+EYG P QP RD+H+T G Sbjct: 1 MEYQGQTGHATTDKVEEYGQPVAGHGGATGGPTGTHGAAAAAAGTGQLQPTRDDHKTD-G 59 Query: 253 ILHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGG-HGD---QQH 381 +L R EDDG+G LPGG H D QQH Sbjct: 60 VLRRSGSSSSSSSEDDGVGGRRKKGMKEKIKEKLPGGAHKDAAGQQH 106
>DH16C_ORYSA (P22912) Dehydrin Rab16C| Length = 164 Score = 45.1 bits (105), Expect = 1e-04 Identities = 34/102 (33%), Positives = 40/102 (39%), Gaps = 11/102 (10%) Frame = +1 Query: 94 YQGQQHG----RVDEYGNPXXXXXXXXXXX------XXXXXXXXXXXXXXYQPMRDEHQT 243 YQGQ HG RVD YGNP +QP+++EH+T Sbjct: 4 YQGQ-HGYGADRVDVYGNPVAGQYGGGATAPGGGHGVMGMGGHHAGAGGQFQPVKEEHKT 62 Query: 244 GRGILHRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGH 366 G GILHR EDDGMG LPGG+ Sbjct: 63 G-GILHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGN 103
>DHR15_WHEAT (Q00742) Dehydrin Rab15| Length = 149 Score = 41.2 bits (95), Expect = 0.002 Identities = 34/103 (33%), Positives = 35/103 (33%), Gaps = 5/103 (4%) Frame = +1 Query: 88 MEYQGQQHG---RVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGIL 258 ME+QGQ RVDEYGNP P R IL Sbjct: 1 MEFQGQHDNPANRVDEYGNPFPLAGAWGERTRSRHRRAV--------PGPQGRAQDRWIL 52 Query: 259 HRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGD-QQH 381 HR EDDGMG LPGGH D QQH Sbjct: 53 HRSGSSSSSSSSEDDGMGGRRKKGMKEKIKEKLPGGHKDNQQH 95
>DHN1_HORVU (P12951) Dehydrin DHN1 (B8)| Length = 139 Score = 39.7 bits (91), Expect = 0.006 Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 4/96 (4%) Frame = +1 Query: 88 MEYQGQQHG----RVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGI 255 MEYQGQ HG +V+EYG P Q RD H+T G+ Sbjct: 1 MEYQGQ-HGHATDKVEEYGQPVAGHGGFTGGPTGTHGAAGVGGAQL-QATRDGHKTD-GV 57 Query: 256 LHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGG 363 L R EDDG+G LPGG Sbjct: 58 LRRSGSSSSSSSEDDGVGGRRKKGMKEKIKEKLPGG 93
>DH16D_ORYSA (P22913) Dehydrin Rab16D| Length = 151 Score = 37.7 bits (86), Expect = 0.022 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 5/98 (5%) Frame = +1 Query: 88 MEYQGQQHG----RVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGI 255 MEYQGQ G R DE+GNP +P R++ +T G+ Sbjct: 1 MEYQGQHGGHASSRADEHGNPAVTTGNAPTGMGAGHIQ---------EPAREDKKTD-GV 50 Query: 256 LHRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGH 366 L R EDDGMG LPGG+ Sbjct: 51 LRRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGN 88
>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)| Length = 1201 Score = 30.0 bits (66), Expect = 4.6 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 522 HPSVALLSVGAVSGSHPGHPSVTLLPVGS 436 HP+ + LS+G P HP+ T+L GS Sbjct: 1020 HPTASTLSMGLPPSRTPSHPTATVLSTGS 1048
>PAQR4_HUMAN (Q8N4S7) Progestin and adipoQ receptor family member 4 (Progestin| and adipoQ receptor family member IV) Length = 273 Score = 29.6 bits (65), Expect = 6.1 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Frame = +2 Query: 422 WPAPAEPTGSRVTLG*PGWEPLTAPTDSK--ATLGWPAPGHM 541 W PA G V G GW LTAP+ S GW A + Sbjct: 144 WLRPAALVGYTVLSGVAGWRALTAPSTSARLRAFGWQAAARL 185
>LAMA_DROME (Q00174) Laminin alpha chain precursor| Length = 3712 Score = 29.6 bits (65), Expect = 6.1 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Frame = -2 Query: 532 RCRPS----QCGLAVRRCRQWLPSRSSQCDXXXXXXXXXXXCQYPAVRSRRCQRCAAGH 368 RC+P + G+ R C S S+QCD V R+C RCA H Sbjct: 2000 RCKPDHYGFESGVGCRACDCGAASNSTQCDPHTGHCACKS-----GVTGRQCDRCAVDH 2053 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,786,631 Number of Sequences: 219361 Number of extensions: 835794 Number of successful extensions: 3026 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2749 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3013 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)