ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart11d02 |
|---|---|
| Clone Library Name | barley_pub |
>ERI1_CAEEL (O44406) 3'-5' exonuclease eri-1 (EC 3.1.-.-) (Enhanced RNAi| protein) Length = 582 Score = 87.8 bits (216), Expect = 2e-17 Identities = 53/138 (38%), Positives = 66/138 (47%) Frame = +2 Query: 167 EATCEKDARIYPQEIIEFPAVLVDGATGLIESAFRRYVRPGHRPVLTQFCRDLTGIRQED 346 E TC + YP EIIE PAVL+D I S FR YVRP P L++FC T I QE Sbjct: 157 ECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVRPVRNPKLSEFCMQFTKIAQET 216 Query: 347 VDGGVDLGEALWMHDAWLKAATAKAGNRRCVRLAVVTXGDWDCRTMLEFECRFKGIEKPS 526 VD EAL W++ N R A VT G D ++F+C I P Sbjct: 217 VDAAPYFREALQRLYTWMRKFNLGQKNS---RFAFVTDGPHDMWKFMQFQCLLSNIRMPH 273 Query: 527 YFDRWINLRIPFQAAFGG 580 F +IN++ F+ F G Sbjct: 274 MFRSFINIKKTFKEKFNG 291
>THEX1_MOUSE (Q7TMF2) 3' histone mRNA exonuclease 1 (EC 3.1.-.-) (3'-5'| exonuclease ERI1) (Eri-1 homolog) Length = 345 Score = 85.1 bits (209), Expect = 1e-16 Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Frame = +2 Query: 167 EATCEK-DARIYPQEIIEFPAVLVDGATGLIESAFRRYVRPGHRPVLTQFCRDLTGIRQE 343 EATCE+ + + EIIEFP VL++ T IE F++YVRP L++FC LTGI Q+ Sbjct: 132 EATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFCIGLTGITQD 191 Query: 344 DVDGGVDLGEALWMHDAWLKAATAKAGNRRCVRLAVVTXGDWDCRTMLEFECRFKGIEKP 523 VD + L W+K+ + C ++T G WD L +CR ++ P Sbjct: 192 QVDRADAFPQVLKKVIEWMKSKELGTKYKYC----ILTDGSWDMSKFLSIQCRLSRLKHP 247 Query: 524 SYFDRWINLR 553 ++ +WIN+R Sbjct: 248 AFAKKWINIR 257
>THEX1_RAT (Q5FVR4) 3' histone mRNA exonuclease 1 (EC 3.1.-.-) (3'-5'| exonuclease ERI1) Length = 345 Score = 82.8 bits (203), Expect = 7e-16 Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Frame = +2 Query: 167 EATCEK-DARIYPQEIIEFPAVLVDGATGLIESAFRRYVRPGHRPVLTQFCRDLTGIRQE 343 EATCE+ + + EIIEFP VL++ + IE F++YVRP L++FC LTGI Q+ Sbjct: 132 EATCEEGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEFCIGLTGITQD 191 Query: 344 DVDGGVDLGEALWMHDAWLKAATAKAGNRRCVRLAVVTXGDWDCRTMLEFECRFKGIEKP 523 VD + L W+K+ + C ++T G WD L +C+ ++ P Sbjct: 192 QVDRADAFPQVLKKVIEWMKSKELGTKYKYC----ILTDGSWDMSKFLNIQCQLSRLKYP 247 Query: 524 SYFDRWINLR 553 S+ +WIN+R Sbjct: 248 SFAKKWINIR 257
>THEX1_HUMAN (Q8IV48) 3' histone mRNA exonuclease 1 (EC 3.1.-.-) (3'-5'| exonuclease ERI1) (Eri-1 homolog) (Histone mRNA 3' end-specific exoribonuclease) (Protein 3'hExo) (HEXO) Length = 348 Score = 79.3 bits (194), Expect = 8e-15 Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 1/130 (0%) Frame = +2 Query: 167 EATCEK-DARIYPQEIIEFPAVLVDGATGLIESAFRRYVRPGHRPVLTQFCRDLTGIRQE 343 EATCE+ + + EIIEFP VL++ T IE F++YVRP L+ FC LTGI Q+ Sbjct: 135 EATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQD 194 Query: 344 DVDGGVDLGEALWMHDAWLKAATAKAGNRRCVRLAVVTXGDWDCRTMLEFECRFKGIEKP 523 VD + L W+K + G + + +++T G WD L +C+ ++ P Sbjct: 195 QVDRADTFPQVLKKVIDWMK--LKELGTK--YKYSLLTDGSWDMSKFLNIQCQLSRLKYP 250 Query: 524 SYFDRWINLR 553 + +WIN+R Sbjct: 251 PFAKKWINIR 260
>CRN4_CAEEL (Q10905) Cell death-related nuclease 4 precursor (EC 3.1.-.-)| Length = 298 Score = 52.4 bits (124), Expect = 1e-06 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 2/130 (1%) Frame = +2 Query: 167 EATCEKDARIYPQEIIEFPAVLVDGATGLIES--AFRRYVRPGHRPVLTQFCRDLTGIRQ 340 E T + + YP E+I+F V D I +F +YV+P LT+ C D TGI Q Sbjct: 17 ETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQ 76 Query: 341 EDVDGGVDLGEALWMHDAWLKAATAKAGNRRCVRLAVVTXGDWDCRTMLEFECRFKGIEK 520 +D WL + G + A V D + +++ + I+ Sbjct: 77 RSIDTADTFDVVYEQFQQWLITLGLEEG-----KFAFVCDSRQDLWRIAQYQMKLSNIQM 131 Query: 521 PSYFDRWINL 550 P++F ++INL Sbjct: 132 PAFFRQYINL 141
>CN155_HUMAN (Q5H9T9) Protein C14orf155| Length = 837 Score = 32.0 bits (71), Expect = 1.4 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 1/112 (0%) Frame = -1 Query: 598 QVDPPSAAESRLEGDPQVDPAIKVGGLLDPLESTLELQHGATIPVPXGHDGQADASPVPC 419 ++ PPSA ES P +P ++ L P E + ++ I P + P+P Sbjct: 349 EILPPSAEES-----PSEEPPAEI--LPPPAEKSPSVELLGEIRSPSAQKAPIEVQPLPA 401 Query: 418 LRRCRLQPSVVHPERLAEIHAAVYVLLPDAGEVPAKLGQHGPVSGA-NVPAE 266 P+ V P + E A V LLP+ E P + + +S A PAE Sbjct: 402 EGALEEAPAKVEPPTVEETLADVQPLLPE--EAPREEARELQLSTAMETPAE 451
>DPO3_STRMU (Q8DWE0) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1465 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +2 Query: 248 GLIESAFRRYVRPGHRPVLTQFCRDLTGIRQEDVDGGVDLGEAL 379 G I F ++ PGH L+QF DLTGI + V G + + L Sbjct: 453 GNIVEQFDEFIDPGHP--LSQFTTDLTGITDQHVKGAKPISQVL 494
>DPO3_MYCPU (P47729) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1435 Score = 31.6 bits (70), Expect = 1.8 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +2 Query: 206 EIIEFPAVLVDGATGLIESAFRRYVRPGHRPVLTQFCRDLTGIRQEDVDGGVDLGEALWM 385 E+I+F A ++ G I +++P + L F LTGI QE ++ G +L EAL Sbjct: 420 ELIQFGASVIKN--GRIIETHHFFIKPKSK--LDSFTTKLTGITQEHLEKGYELQEALEK 475 Query: 386 HDAWLKAATAKAGN 427 + KA A N Sbjct: 476 ISSIFKARIMVAHN 489
>ILVC_METTH (O27491) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 333 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Frame = +2 Query: 224 AVLVDGATGLIESAFRRYVRPGHRPVLTQF--CRDL 325 AVL G T LI +AF+ VR G++P + F C +L Sbjct: 201 AVLCGGVTELINTAFKTLVRAGYQPEIAYFETCHEL 236
>DPO3_OCEIH (Q8EQU6) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1428 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/64 (32%), Positives = 30/64 (46%) Frame = +2 Query: 209 IIEFPAVLVDGATGLIESAFRRYVRPGHRPVLTQFCRDLTGIRQEDVDGGVDLGEALWMH 388 IIE AV + G G I F + P H L+Q DLTGI + V+ ++ + L Sbjct: 431 IIELAAVKIKG--GEIVDRFESFANPHH--ALSQTTIDLTGITDDMVNDAPEVADVLKDF 486 Query: 389 DAWL 400 W+ Sbjct: 487 HTWM 490
>KCNH8_RAT (Q9QWS8) Potassium voltage-gated channel subfamily H member 8| (Voltage-gated potassium channel subunit Kv12.1) (Ether-a-go-go-like potassium channel 3) (ELK channel 3) Length = 1102 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = -1 Query: 253 EAGGAVDEHGRKLNDLLRVDPSVLLAS--RLEVHHQEKVEILLH 128 +A GA HG +D+ VDPS++ ++ R E H Q V+ LH Sbjct: 938 QANGAHLYHGNVTSDIWSVDPSLVGSNPQRTEAHEQSPVDSELH 981
>MRAZ_THICR (Q31I69) Protein mraZ| Length = 152 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Frame = -1 Query: 223 RKLNDLLRVDPSVLLASRLEVHHQEKVE------ILLHLMAQPLPARRHDRCHLRHALAG 62 RKL L +DP L RL + H ++E +LL P R H + L G Sbjct: 60 RKLMSLPNMDPQARLVQRLLLGHASEMEMDGQGRVLL-----PSLLREHAKLEKEAILLG 114 Query: 61 SPSKLEIWESREY 23 +K E+W + Sbjct: 115 QGNKFELWSQEAW 127
>MFD_MYCTU (P64326) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1234 Score = 30.0 bits (66), Expect = 5.3 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 10/115 (8%) Frame = -1 Query: 379 ERLAEIHAAVYVLLPDAGEVPAKLGQ-HGP------VSGANVPAESGFDEAGGAVDE-HG 224 ERL+E +L P P +G GP + GAN+ + D G V G Sbjct: 443 ERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVSAAEG 502 Query: 223 RKLNDLLR--VDPSVLLASRLEVHHQEKVEILLHLMAQPLPARRHDRCHLRHALA 65 ++L R VDP L A L VH Q + + ++ + + R + L +A A Sbjct: 503 KRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASA 557
>MFD_MYCBO (P64327) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1234 Score = 30.0 bits (66), Expect = 5.3 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 10/115 (8%) Frame = -1 Query: 379 ERLAEIHAAVYVLLPDAGEVPAKLGQ-HGP------VSGANVPAESGFDEAGGAVDE-HG 224 ERL+E +L P P +G GP + GAN+ + D G V G Sbjct: 443 ERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVSAAEG 502 Query: 223 RKLNDLLR--VDPSVLLASRLEVHHQEKVEILLHLMAQPLPARRHDRCHLRHALA 65 ++L R VDP L A L VH Q + + ++ + + R + L +A A Sbjct: 503 KRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASA 557
>PYRG_AZOBR (P28595) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 544 Score = 29.6 bits (65), Expect = 6.9 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 3/107 (2%) Frame = -1 Query: 439 DASPVPCLRRCRLQPSVVHPERLAEIHAAVYVLLPDAGEVPAKLGQHG--PVSGANVPAE 266 D P L R + V PE IH + +P AGE+ K QH + G + A Sbjct: 146 DIESTPFLEAIRQFGNEVGPENALFIHLTLLPYIPTAGELKTKPTQHSVKELLGMGIQAN 205 Query: 265 SGFDEAGGAVDEHGRKLNDLL-RVDPSVLLASRLEVHHQEKVEILLH 128 A + E+ RK L + P ++A+ L+V +V + H Sbjct: 206 ILLCRADRPIPENERKKIALFCNIRPERVIAA-LDVDSIYQVPVSYH 251
>RL25_PSEAE (Q9HVC4) 50S ribosomal protein L25 (General stress protein CTC)| Length = 204 Score = 29.6 bits (65), Expect = 6.9 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 6/128 (4%) Frame = -1 Query: 601 VQVDPPSAAESRLEGDPQVDPAIKVGGLLDPLESTLELQHGATIPVPXGHDGQADASPVP 422 V+ D A RL + + PA+ GG +P TLEL+ A + + +A S V Sbjct: 10 VRSDLGKGASRRLRRNAGLVPAVVYGGDKEPQSVTLELREIAKL-----LENEAAFSHVI 64 Query: 421 CLRRCRLQPSVV------HPERLAEIHAAVYVLLPDAGEVPAKLGQHGPVSGANVPAESG 260 L + +V+ HP + +HA ++ D KL H P+ N G Sbjct: 65 ALNVGGAKETVLIKALQRHPAKGFVMHADFLRVVAD-----HKLTAHVPLHFINEEVAVG 119 Query: 259 FDEAGGAV 236 +AGG + Sbjct: 120 VKQAGGEI 127
>PARB_XYLFA (Q9PB63) Probable chromosome partitioning protein parB| Length = 310 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = -1 Query: 541 PAIKVGGLLDPLESTLELQHGATIPVPXGHDGQADASPVPCLRRCRLQPSVVHPER 374 P +K GL LE+ L + G+++P P +GQ + L+ +LQPS P R Sbjct: 6 PPLKKRGLGRGLEALLGSKGGSSVP-PTVAEGQLPGEVLRTLQITQLQPSKYQPRR 60
>KCNH8_MOUSE (P59111) Potassium voltage-gated channel subfamily H member 8| (Voltage-gated potassium channel subunit Kv12.1) (Ether-a-go-go-like potassium channel 3) (ELK channel 3) (ELK3) (Fragment) Length = 876 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = -1 Query: 253 EAGGAVDEHGRKLNDLLRVDPSVLLAS--RLEVHHQEKVEILLH 128 +AGGA HG + + VDPS++ +S R E H Q + LH Sbjct: 712 QAGGAHLYHGNVASGIWSVDPSLVGSSPQRTEAHEQNPADSELH 755
>ALR2_THETN (Q8R860) Alanine racemase 2 (EC 5.1.1.1)| Length = 388 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/58 (29%), Positives = 29/58 (50%) Frame = +2 Query: 200 PQEIIEFPAVLVDGATGLIESAFRRYVRPGHRPVLTQFCRDLTGIRQEDVDGGVDLGE 373 P +I P DG L+ + VR + P++ + C D T I +V+ GV++G+ Sbjct: 276 PSKIATLPIGYADGLNRLLSNNHEVLVRGKYVPIVGRVCMDQTMIDVTEVE-GVEVGD 332
>ILVC_LISMO (Q8Y5S0) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 331 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 224 AVLVDGATGLIESAFRRYVRPGHRPVLTQF 313 AVL GAT LI++ F V G++P L F Sbjct: 196 AVLCGGATHLIQAGFETLVEAGYQPELAYF 225
>ILVC_LISMF (Q71Y36) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 331 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 224 AVLVDGATGLIESAFRRYVRPGHRPVLTQF 313 AVL GAT LI++ F V G++P L F Sbjct: 196 AVLCGGATHLIQAGFETLVEAGYQPELAYF 225
>ILVC_LISIN (Q92A29) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 331 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 224 AVLVDGATGLIESAFRRYVRPGHRPVLTQF 313 AVL GAT LI++ F V G++P L F Sbjct: 196 AVLCGGATHLIQAGFETLVEAGYQPELAYF 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,275,860 Number of Sequences: 219361 Number of extensions: 1477647 Number of successful extensions: 5668 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5226 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5660 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
