ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart10g11 |
|---|---|
| Clone Library Name | barley_pub |
>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) Length = 389 Score = 254 bits (648), Expect = 1e-67 Identities = 134/149 (89%), Positives = 137/149 (91%) Frame = +1 Query: 94 KQQPQLVLAHKLFLLSQPDVDDLAKVGLRDDVLAAVKSDDMAALYESLAADGVLEMDAAL 273 KQQP LVLAHKLFLLS PDVDDLAKV LR DVLAAVKSDDMA+LYESL A GVLE DAAL Sbjct: 10 KQQPHLVLAHKLFLLSHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDAAL 69 Query: 274 LAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTGG 453 LAEMRGRIEEE RK DEKI DAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVT G Sbjct: 70 LAEMRGRIEEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTEG 129 Query: 454 KTVAVGQKMDLVFYTLQIGLFHMDFDLIS 540 KTVAVGQKMDLVF+TLQIG F+MDFDLIS Sbjct: 130 KTVAVGQKMDLVFHTLQIGFFYMDFDLIS 158
>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6| Length = 387 Score = 200 bits (508), Expect = 2e-51 Identities = 100/148 (67%), Positives = 121/148 (81%) Frame = +1 Query: 97 QQPQLVLAHKLFLLSQPDVDDLAKVGLRDDVLAAVKSDDMAALYESLAADGVLEMDAALL 276 QQP L+LA+KLFLL+ PDV D+ KV L+ +VL ++S MA LYE+L A VL++D +LL Sbjct: 9 QQPHLILANKLFLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDLDQSLL 68 Query: 277 AEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTGGK 456 MR EEE +K DEKI DAEENLGESEVREAHLAK+LYFIR+ +KEKALEQLK+T GK Sbjct: 69 ESMRAANEEELKKLDEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLKLTEGK 128 Query: 457 TVAVGQKMDLVFYTLQIGLFHMDFDLIS 540 TVAVGQKMD+VFYTLQ+ F+MDFDL+S Sbjct: 129 TVAVGQKMDVVFYTLQLAFFYMDFDLVS 156
>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) Length = 389 Score = 126 bits (317), Expect = 3e-29 Identities = 68/148 (45%), Positives = 103/148 (69%) Frame = +1 Query: 97 QQPQLVLAHKLFLLSQPDVDDLAKVGLRDDVLAAVKSDDMAALYESLAADGVLEMDAALL 276 + P L +A FLLS P+ A V R++++AAV+ ++MA YE+L +MD LL Sbjct: 13 KNPDLRIAQLRFLLSLPEHRGDAAV--REELMAAVRENNMAPYYEALCKSLDWQMDVDLL 70 Query: 277 AEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTGGK 456 ++M+ EEE ++ DE++ DAE+NLGESE+R+A +AK+ Y ++G+KE AL + T K Sbjct: 71 SKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCQIGDKEGALTAFRKTYDK 130 Query: 457 TVAVGQKMDLVFYTLQIGLFHMDFDLIS 540 TVA+G ++D+VFY L+IGLF+MD DLI+ Sbjct: 131 TVALGHRLDIVFYLLRIGLFYMDNDLIT 158
>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) (Proteasome regulatory particle subunit p44S10) (Phosphonoformate immuno-associated protein 4) (Breast cancer-associated protein SGA-113M) Length = 389 Score = 125 bits (315), Expect = 6e-29 Identities = 68/148 (45%), Positives = 102/148 (68%) Frame = +1 Query: 97 QQPQLVLAHKLFLLSQPDVDDLAKVGLRDDVLAAVKSDDMAALYESLAADGVLEMDAALL 276 + P L +A FLLS P+ A V RD+++AAV+ ++MA YE+L ++D LL Sbjct: 13 KNPDLRIAQLRFLLSLPEHRGDAAV--RDELMAAVRDNNMAPYYEALCKSLDWQIDVDLL 70 Query: 277 AEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTGGK 456 +M+ E+E ++ DE++ DAE+NLGESE+R+A +AK+ Y R+G+KE AL + T K Sbjct: 71 NKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDK 130 Query: 457 TVAVGQKMDLVFYTLQIGLFHMDFDLIS 540 TVA+G ++D+VFY L+IGLF+MD DLI+ Sbjct: 131 TVALGHRLDIVFYLLRIGLFYMDNDLIT 158
>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit rpn-7) Length = 410 Score = 104 bits (259), Expect = 2e-22 Identities = 54/146 (36%), Positives = 88/146 (60%) Frame = +1 Query: 103 PQLVLAHKLFLLSQPDVDDLAKVGLRDDVLAAVKSDDMAALYESLAADGVLEMDAALLAE 282 P L L+ F+L+ P+VD K + + +K DMA YE + AD + +DA LA Sbjct: 27 PDLELSQTRFMLNHPEVDSSVKEAKLEKLQETIKEFDMAPFYELVCADFKIVVDATQLAA 86 Query: 283 MRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTGGKTV 462 M+ +++ + ++ DAE+NLGESEVR+ L K Y+ ++G+K+ AL+ T KTV Sbjct: 87 MKAANQKKIDEITAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTV 146 Query: 463 AVGQKMDLVFYTLQIGLFHMDFDLIS 540 +G ++D+VF +++GLF +D LI+ Sbjct: 147 GMGYRIDVVFAMIRVGLFFLDHHLIN 172
>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (Rpn7 protein) Length = 389 Score = 103 bits (258), Expect = 2e-22 Identities = 58/149 (38%), Positives = 92/149 (61%) Frame = +1 Query: 94 KQQPQLVLAHKLFLLSQPDVDDLAKVGLRDDVLAAVKSDDMAALYESLAADGVLEMDAAL 273 ++ P L LA FLL+ + A L+ +L A+++++MA YE + ++ +D L Sbjct: 12 EKNPNLELAQTKFLLTLAEYKQDA--ALKAKLLEAIRTENMAPWYEHICSELGWTVDKDL 69 Query: 274 LAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTGG 453 LA M+ E + D I DAE+NLGE EVREA+L KS Y R+G+K A + T Sbjct: 70 LARMKENNRVEVEQLDAAIEDAEKNLGEMEVREANLKKSEYLCRIGDKAAAETAFRKTYE 129 Query: 454 KTVAVGQKMDLVFYTLQIGLFHMDFDLIS 540 KTV++G ++D+VF+ +++GLF++D DLI+ Sbjct: 130 KTVSLGHRLDIVFHLIRLGLFYLDHDLIT 158
>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7| Length = 409 Score = 66.2 bits (160), Expect = 6e-11 Identities = 38/147 (25%), Positives = 81/147 (55%), Gaps = 4/147 (2%) Frame = +1 Query: 109 LVLAHKLFLLSQPDVDDLAKVGLRDDVLAAVKSDDMAALYESLAAD----GVLEMDAALL 276 L ++ +F LS P +++ ++ L D + +A++ D+A LY+ L+ + ++ D+ L Sbjct: 23 LTISQAIFELSSPFLENKSQKAL-DTLFSAIRDHDLAPLYKYLSENPKTSASIDFDSNFL 81 Query: 277 AEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTGGK 456 M + EE+ +FD+ I DA+E GE E+ EA K+ Y+ + ++E+ ++ T + Sbjct: 82 NSMIKKNEEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERGVQLCDETFER 141 Query: 457 TVAVGQKMDLVFYTLQIGLFHMDFDLI 537 G K+D++F +++ + D ++ Sbjct: 142 ATLTGMKIDVLFSKIRLAYVYADMRVV 168
>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7| Length = 429 Score = 55.8 bits (133), Expect = 7e-08 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 21/162 (12%) Frame = +1 Query: 103 PQLVLAHKLFLLSQPDVDDLAKVGLRDDVLAAVKSDDMAALYESLAADGV---------- 252 P ++ K FLL+Q V + + VLA +K ++MA Y+ L + + Sbjct: 22 PNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEH 81 Query: 253 ----------LEMDAALLAEMRGRIEEETRKFDEKIGDAEEN-LGESEVREAHLAKSLYF 399 ++ D L E+ + E + ++ +EKI EE+ GE E +A + Y+ Sbjct: 82 DEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYY 141 Query: 400 IRVGEKEKALEQLKVTGGKTVAVGQKMDLVFYTLQIGLFHMD 525 ++G+K+ A + L + K ++ G K+D++ ++G F+ D Sbjct: 142 AQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYND 183
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 35.0 bits (79), Expect = 0.14 Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 6/148 (4%) Frame = -1 Query: 467 TATVLPPVTLSCSSAFSFSPTLMKYKDLARWASRTSLSP---KFSSASPIFSSNLRVXXX 297 +A+++ PVT + SS S +PT + S TS SP SS+S SS+ Sbjct: 162 SASIISPVTSTLSSTTSSNPTTTSLSSTSTSPSSTSTSPSSTSTSSSSTSTSSSSTSTSS 221 Query: 296 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDFTAARTSSRRP---TLARSSTSGCERRNS 126 S T++ ++S P + + SSTS S Sbjct: 222 SSTSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKS 281 Query: 125 LCASTSCGCCFXXXXXXXXXXXPTRLAS 42 AS++ + LAS Sbjct: 282 TSASSTSTSSYSTSTSPSLTSSSPTLAS 309
>RRBP1_MOUSE (Q99PL5) Ribosome-binding protein 1 (Ribosome receptor protein)| (mRRp) Length = 1605 Score = 32.7 bits (73), Expect = 0.67 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +1 Query: 250 VLEMDAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHL 381 +L +L +++ +EEE R + K+G AEE L +S V HL Sbjct: 1333 ILAETEGMLKDLQKSVEEEERVWKAKVGAAEEELHKSRVTVKHL 1376
>ISPE_CAUCR (Q9A8L7) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 295 Score = 32.7 bits (73), Expect = 0.67 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = +1 Query: 175 LRDDVLAAVKSDDMAALYESLAADGVLEMDA-ALLAEMRG 291 LRD + A+ DD+ AL SL ADG + A AL+AE RG Sbjct: 120 LRDALAPALSDDDLEALAASLGADGAACLRARALIAEGRG 159
>LEU2_CLOAB (Q97EE0) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 422 Score = 32.3 bits (72), Expect = 0.88 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Frame = +1 Query: 229 ESLAADGVLEMDAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLA---KSLYF 399 E+ A +G+ +D + M+GR + E +KF DA+E+ S V E L+ ++ F Sbjct: 222 EAGAKNGIFPVDEKTIEYMKGRSDRELKKF-----DADEDAEYSRVIEIDLSTLKPTVAF 276 Query: 400 IRVGEKEKALEQLKVTGGKTVAVG 471 + E K ++Q+ V +G Sbjct: 277 PHLPENTKTIDQVGEVNVDQVVIG 300
>MRCKB_MOUSE (Q7TT50) Serine/threonine-protein kinase MRCK beta (EC 2.7.11.1)| (CDC42-binding protein kinase beta) (Myotonic dystrophy kinase-related CDC42-binding kinase beta) (Myotonic dystrophy protein kinase-like beta) (MRCK beta) (DMPK-like beta) Length = 1713 Score = 32.3 bits (72), Expect = 0.88 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Frame = +1 Query: 253 LEMDAALLAEMRGR--IEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEK 423 LE+ +AL AE+R + ++EE RK + E L ESE + L + + +R +EK Sbjct: 877 LELQSALEAEIRAKQLVQEELRKVKDSSLAFESKLKESEAKNRELLEEMQSLRKRMEEK 935
>RAD50_PYRKO (Q5JHN1) DNA double-strand break repair rad50 ATPase| Length = 883 Score = 31.6 bits (70), Expect = 1.5 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%) Frame = +1 Query: 151 VDDLAKVGLRDDVLAAVKSD---DMAALYESLAADGVLEMDAALLAEMRGRI---EEETR 312 +D+L+K R L K ++ AL E L A + A L ++ R+ EEE Sbjct: 330 IDELSKKEARVKELLKEKEGLQKELGALEEDLKAYQRAKELMANLERLKKRLTLSEEEIE 389 Query: 313 KFDEKIGDAEENLGE--SEVREAHLAKSLYFIRVGEKEKALEQLKVTGGKTVAVGQKM 480 K + +I A E E E+ E + GE+ KAL +LK G+ G+++ Sbjct: 390 KLEAEIQKARERKEEIMKELEEIGSRRGELKSIAGERNKALMELKKAKGRCPVCGREL 447
>ASSY_SYNPX (Q7U3B9) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -3 Query: 321 VELAGLLLDPAAHLREQRRVHLQHAVGRQRLVQRRHVIGFHCGE 190 V + G +LDP A +RE R+ H +GR +++ R V+G E Sbjct: 230 VAINGQVLDPVAMIREANRLAGSHGIGRLDMIENR-VVGIKSRE 272
>RRBP1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome receptor protein) (180| kDa ribosome receptor homolog) (ES/130-related protein) Length = 1410 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/59 (30%), Positives = 33/59 (55%) Frame = +1 Query: 250 VLEMDAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKA 426 +L +L +++ +EEE + + K+G AEE L +S V HL + + ++ GE E + Sbjct: 1134 ILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLK-GELESS 1191
>AMPA_BACHK (Q6HBY2) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) Length = 494 Score = 31.2 bits (69), Expect = 2.0 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +1 Query: 190 LAAVKSDDMAALYESLAADGVLEMDAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVR 369 LA+ ++ +A E + V E+D A +++ +EE+ +K +LG+++V Sbjct: 8 LASHEAVVVALFEEEKTSSFVQELDKAFEGQLQVLLEEKELSTKKKAISKVHSLGKTDV- 66 Query: 370 EAHLAKSLYFIRVGEKEK-ALEQLKVTGGKT 459 K YF+ +G+KE E L+ GKT Sbjct: 67 -----KRYYFVGLGKKESYTTETLRSALGKT 92
>AMPA_BACAN (Q81XS5) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) Length = 494 Score = 31.2 bits (69), Expect = 2.0 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +1 Query: 190 LAAVKSDDMAALYESLAADGVLEMDAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVR 369 LA+ ++ +A E + V E+D A +++ +EE+ +K +LG+++V Sbjct: 8 LASHEAVVVALFEEEKTSSFVQELDKAFEGQLQVLLEEKELSTKKKAISKVHSLGKTDV- 66 Query: 370 EAHLAKSLYFIRVGEKEK-ALEQLKVTGGKT 459 K YF+ +G+KE E L+ GKT Sbjct: 67 -----KRYYFVGLGKKESYTTETLRSALGKT 92
>MUTS2_CLOAB (Q97GM6) MutS2 protein| Length = 788 Score = 31.2 bits (69), Expect = 2.0 Identities = 15/39 (38%), Positives = 24/39 (61%) Frame = +1 Query: 277 AEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSL 393 +E R R++E +K EK+ +AEE+L SE + KS+ Sbjct: 601 SEARQRLQESRQKLKEKLNNAEESLNISERDQGEALKSV 639
>TBP7_CAEEL (P54816) TAT-binding homolog 7| Length = 1242 Score = 30.8 bits (68), Expect = 2.6 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Frame = +1 Query: 229 ESLAADGVLEMDAA-----LLAEMRGRIEEETRKFDEKIGDAEENLGESE 363 E+LAAD L M+ +AE+ G E+E EKIG EE G E Sbjct: 185 ENLAADDPLPMEGGGEIVLPIAEIDGMAEQENEDLIEKIGREEEEEGAEE 234
>IF2P_SCHPO (Q10251) Eukaryotic translation initiation factor 5B (eIF-5B)| (Translation initiation factor IF-2) Length = 1079 Score = 30.4 bits (67), Expect = 3.3 Identities = 24/69 (34%), Positives = 35/69 (50%) Frame = +1 Query: 271 LLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTG 450 +L E R R EEE R +E+ AEE +EV EA K ++ EKE+ ++ Sbjct: 253 MLEEKRAREEEEQRIREEEARIAEEEKRLAEVEEAR--KEEARLKKKEKERKKKEEMKAQ 310 Query: 451 GKTVAVGQK 477 GK ++ QK Sbjct: 311 GKYLSKKQK 319
>YGCJ_ECOLI (Q46899) Hypothetical protein ygcJ| Length = 363 Score = 30.4 bits (67), Expect = 3.3 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 6/82 (7%) Frame = +1 Query: 253 LEMDAALLAEMRGRIEEET-RKFDEKIGDAEENLGESEVREAHLAKSLYFIR--VGEK-- 417 ++ DA + R RI ++ ++ K G +N+GES +R HLA+ +R +GE+ Sbjct: 25 MQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFD 84 Query: 418 EKALEQ-LKVTGGKTVAVGQKM 480 +K +++ L + GK+V +K+ Sbjct: 85 QKIIDKTLALLSGKSVDEAEKI 106
>CH60_CAEEL (P50140) Chaperonin homolog HSP60, mitochondrial precursor (Heat| shock protein 60) (HSP-60) Length = 568 Score = 30.0 bits (66), Expect = 4.4 Identities = 23/97 (23%), Positives = 42/97 (43%) Frame = +1 Query: 199 VKSDDMAALYESLAADGVLEMDAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAH 378 +K +D+ A + + D LL RG E ++ + + E++ + E + + Sbjct: 323 IKIEDITANDLGEVDEVTITKDDTLLLRGRGDQTEIEKRIEHITDEIEQSTSDYEKEKLN 382 Query: 379 LAKSLYFIRVGEKEKALEQLKVTGGKTVAVGQKMDLV 489 R+ + K + LK+ GG V VG+K D V Sbjct: 383 E-------RLAKLSKGVAVLKIGGGSEVEVGEKKDRV 412
>CDC6_PYRKO (Q5JET2) Cell division control protein 6 homolog (CDC6 homolog)| Length = 415 Score = 30.0 bits (66), Expect = 4.4 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%) Frame = +1 Query: 175 LRDDVLAAVKSDDMAALYESLAADGVLEMDAALLAEMRGRIEEETRKFD--EKIGDAEEN 348 LRD ++ K A YE + D V+ + AAL A G + R D G+ E Sbjct: 222 LRDILMQRAKE----AFYEGVLDDAVVPLCAALAAREHG---DARRALDLLRVAGEIAER 274 Query: 349 LGESEVREAHLAKSLYFIRVGEKEKALEQL 438 G S+V E H+ K+ I E+ ++ L Sbjct: 275 EGASKVTERHVWKAQEKIEQDTMEEVIKTL 304
>LACD2_STRMU (Q8DWE5) Tagatose 1,6-diphosphate aldolase 2 (EC 4.1.2.40)| (Tagatose-bisphosphate aldolase 2) (D-tagatose-1,6-bisphosphate aldolase 2) Length = 329 Score = 30.0 bits (66), Expect = 4.4 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Frame = +1 Query: 133 LLSQPDVDDLAKVGLRDDVLAAVKSDDMAALYESLAADGVLEMDAALLAEMRGRIEEETR 312 +LSQ + LAKV + V++A+ D AL +A + E A + E++ + EE Sbjct: 2 ILSQQKYNYLAKVSDSNGVISALAFDQRGALKCLMAQYQMKEPTVAQMEELKVLVSEELT 61 Query: 313 KFDEKI-GDAEENLGESEVREAHLAKSLYFIRVG 411 + I D E L ++ R+ L + + G Sbjct: 62 PYASSILLDPEYGLPAAQARDREAGLLLAYEKTG 95
>SWAP_CAEEL (Q10580) Protein SWAP (Suppressor of white apricot protein homolog)| Length = 749 Score = 29.6 bits (65), Expect = 5.7 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%) Frame = +1 Query: 280 EMRGRIEEETRKFDEKIGDA---EENLGESEVRE 372 E R ++EEETRK EKI ++ +N G S+ RE Sbjct: 616 EERSKLEEETRKKAEKISESLSERKNTGRSDRRE 649
>UVH3_ARATH (Q9ATY5) DNA-repair protein UVH3 (EC 3.1.-.-) (UV hypersensitive| protein 3) (XPG homolog) (ERCC5 homolog) (RAD2 homolog) (AtUVH3) (AtXPG) (AtRAD2) Length = 1479 Score = 29.6 bits (65), Expect = 5.7 Identities = 20/78 (25%), Positives = 38/78 (48%) Frame = +1 Query: 259 MDAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQL 438 M LLA+MR ++ E R+ +K+ A E E ++ EA+L + + E +++ Sbjct: 291 MQLDLLAQMREKLMAENRQKYQKVKKAPEKFSELQI-EAYLKTVAFRREINEVQRSAGGR 349 Query: 439 KVTGGKTVAVGQKMDLVF 492 V G +T + + + F Sbjct: 350 AVGGVQTSRIASEANREF 367
>YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein C19G12.16c| precursor Length = 670 Score = 29.3 bits (64), Expect = 7.5 Identities = 37/162 (22%), Positives = 51/162 (31%), Gaps = 10/162 (6%) Frame = -1 Query: 482 SIFCPTATVLPPVTLSCSSAFSFSPTLMKYKDLARWASRTSLSPKFSSASPIFSSNLRVX 303 SI T+T PVT+S SS SF+P+ +L S T+ S+SP +S++ + Sbjct: 248 SIITSTST---PVTVSSSSLSSFTPSYS--TNLTTTGSTTTTGSATVSSSPFYSNSSVIP 302 Query: 302 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDFTAART----------SSRRPTLARSS 153 T + T SS PT SS Sbjct: 303 TSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVIPTSVPSS 362 Query: 152 TSGCERRNSLCASTSCGCCFXXXXXXXXXXXPTRLASPRFAS 27 S NS +T T +SP F S Sbjct: 363 VSSFTSSNSSYTTTLTASNTSITYTGTGTGSATFTSSPPFYS 404
>RNC_LACSS (Q38XR8) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 230 Score = 29.3 bits (64), Expect = 7.5 Identities = 27/80 (33%), Positives = 37/80 (46%) Frame = +1 Query: 202 KSDDMAALYESLAADGVLEMDAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHL 381 ++D L E L DG +E+D LLAE+ G + + D +GD LG R Sbjct: 159 QTDYKTNLQEFLQQDGEIEIDYQLLAEV-GPSHDRQFEVDVLVGD--RVLGSGVGRNKKA 215 Query: 382 AKSLYFIRVGEKEKALEQLK 441 A+ +KALEQLK Sbjct: 216 AEQ------AAAKKALEQLK 229
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 29.3 bits (64), Expect = 7.5 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Frame = -1 Query: 488 TRSIFCPTATVLPPVTLSCSSAFSFSPTLMKYKDLARWASRTS-----LSPKFSSASPIF 324 T + PT+ P + S S +SP+ KY + S TS SP++S SP + Sbjct: 1692 TSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQY 1751 Query: 323 S 321 S Sbjct: 1752 S 1752
>PRMA_STAS1 (Q49Y20) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 312 Score = 29.3 bits (64), Expect = 7.5 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 6/64 (9%) Frame = +1 Query: 295 IEEETRKFDEKIGDAEENLGESEVREAH--LAKSLYFIRVG---EKEKAL-EQLKVTGGK 456 ++EET KFD I + ++ E + +A+ L K YFI G EK +A+ E +K +G + Sbjct: 233 LKEETEKFDVVIANILAHIIEEMIDDAYNTLNKDGYFITSGIIEEKHEAIVEHMKRSGFE 292 Query: 457 TVAV 468 V++ Sbjct: 293 IVSI 296
>SYTM_ARATH (O04630) Threonyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.3) (Threonine--tRNA ligase) (ThrRS) Length = 709 Score = 29.3 bits (64), Expect = 7.5 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 12/62 (19%) Frame = +1 Query: 295 IEEETRKFDEKIGDAEENLG------------ESEVREAHLAKSLYFIRVGEKEKALEQL 438 I E+++++ EK+ ++ G + +VREA LA+ Y + VGE E A Q+ Sbjct: 620 ISEKSQQYAEKVQKQIKDAGFYVDADLTDRKIDKKVREAQLAQYNYILVVGETEAATGQV 679 Query: 439 KV 444 V Sbjct: 680 SV 681
>TPM1_HYDAT (P39921) Tropomyosin-1 (Tropomyosin I)| Length = 253 Score = 28.9 bits (63), Expect = 9.7 Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Frame = +1 Query: 253 LEMDAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKAL- 429 LE + + + R + EEE + DEKI + EE E +V++ L ++ +R E+ + Sbjct: 83 LEDVSESVKQARNQYEEEEAESDEKIQNLEE---EVKVKKRELEENEIKLREKERRNVVV 139 Query: 430 -EQLKVTGGKTVAVGQKMDLVFYTLQIGL 513 ++ K A+ ++++++ T++ GL Sbjct: 140 HRDIEAATVKADAIEKRIEILENTIKNGL 168
>GREA_RHILO (Q98I49) Transcription elongation factor greA (Transcript cleavage| factor greA) Length = 157 Score = 28.9 bits (63), Expect = 9.7 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Frame = +1 Query: 265 AALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAK---SLYFIRVGEKEKALEQ 435 A+L E+R R +EE + E I +A + SE E H AK SL RV E E + + Sbjct: 12 ASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNEGRVNELEDLIAR 71 Query: 436 LKV 444 +V Sbjct: 72 AEV 74
>SYV_BACHK (Q6HD68) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 881 Score = 28.9 bits (63), Expect = 9.7 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +1 Query: 262 DAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLK 441 D L E R R+E+E KFD+++ ++ L + +AK+ + GE+ K + L+ Sbjct: 812 DLINLDEERARLEKELEKFDKEVERVQKKLS----NQGFVAKAPAAVIEGERAKEQDYLE 867 Query: 442 VTGGKTVAVGQKM 480 K AV Q++ Sbjct: 868 ----KREAVRQRL 876
>SYV_BACCZ (Q633Y6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 881 Score = 28.9 bits (63), Expect = 9.7 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +1 Query: 262 DAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLK 441 D L E R R+E+E KFD+++ ++ L + +AK+ + GE+ K + L+ Sbjct: 812 DLINLDEERARLEKELEKFDKEVERVQKKLS----NQGFVAKAPAAVIEGERAKEQDYLE 867 Query: 442 VTGGKTVAVGQKM 480 K AV Q++ Sbjct: 868 ----KREAVRQRL 876
>SYV_BACCR (Q817R6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 881 Score = 28.9 bits (63), Expect = 9.7 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +1 Query: 262 DAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLK 441 D L E R R+E+E KFD+++ ++ L + +AK+ + GE+ K + L+ Sbjct: 812 DLINLDEERARLEKELEKFDKEVERVQKKLS----NQGFVAKAPAAVIEGERAKEQDYLE 867 Query: 442 VTGGKTVAVGQKM 480 K AV Q++ Sbjct: 868 ----KREAVRQRL 876
>SYV_BACC1 (Q72ZW8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 881 Score = 28.9 bits (63), Expect = 9.7 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +1 Query: 262 DAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLK 441 D L E R R+E+E KFD+++ ++ L + +AK+ + GE+ K + L+ Sbjct: 812 DLINLDEERARLEKELEKFDKEVERVQKKLS----NQGFVAKAPAAVIEGERAKEQDYLE 867 Query: 442 VTGGKTVAVGQKM 480 K AV Q++ Sbjct: 868 ----KREAVRQRL 876
>SYV_BACAN (Q81LD3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 881 Score = 28.9 bits (63), Expect = 9.7 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = +1 Query: 262 DAALLAEMRGRIEEETRKFDEKIGDAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLK 441 D L E R R+E+E KFD+++ ++ L + +AK+ + GE+ K + L+ Sbjct: 812 DLINLDEERARLEKELEKFDKEVERVQKKLS----NQGFVAKAPAAVIEGERAKEQDYLE 867 Query: 442 VTGGKTVAVGQKM 480 K AV Q++ Sbjct: 868 ----KREAVRQRL 876
>INCE_CHICK (P53352) Inner centromere protein| Length = 877 Score = 28.9 bits (63), Expect = 9.7 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%) Frame = +1 Query: 280 EMRGRIEEETRKFDEKIGDA-EENLGESEVREAHLAKSLYFIRV-------GEKEKALEQ 435 E + RIE++ FDEK A EE L E ++++ AK + K+KAL+Q Sbjct: 562 ERKRRIEQKLALFDEKTEKAREERLAEEKIKKRAAAKKMEEAEARRRQDEEARKQKALQQ 621
>RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)| Length = 1116 Score = 28.9 bits (63), Expect = 9.7 Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 11/115 (9%) Frame = +1 Query: 202 KSDDMAALYE---SLAADGVLEMDAAL------LAEMRGRIE--EETRKFDEKIGDAEEN 348 K M++L E SL AD D AL LAE IE +E R DE+ E + Sbjct: 590 KEKQMSSLKERVKSLQAD-TTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEID 648 Query: 349 LGESEVREAHLAKSLYFIRVGEKEKALEQLKVTGGKTVAVGQKMDLVFYTLQIGL 513 + ++++ SL + EKE +L LK + G K D TL+I L Sbjct: 649 NYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAL 703
>BFR2_MAGMG (O50172) Bacterioferritin subunit 2 (BFR 2)| Length = 160 Score = 28.9 bits (63), Expect = 9.7 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +1 Query: 97 QQPQLVLAHKLFLLSQPDVDDLAKVGLRDDVLAAVKSD 210 +Q V+ LFL P++ DL K+G+ +DV + SD Sbjct: 53 KQADEVIERILFLEGLPNLQDLGKLGIGEDVAEMLASD 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.135 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,068,649 Number of Sequences: 219361 Number of extensions: 971729 Number of successful extensions: 4089 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 3929 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4083 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
