ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart10d07 |
|---|---|
| Clone Library Name | barley_pub |
>CLPP1_RHOBA (Q7UK67) ATP-dependent Clp protease proteolytic subunit 1 (EC| 3.4.21.92) (Endopeptidase Clp 1) Length = 227 Score = 33.9 bits (76), Expect = 0.29 Identities = 23/90 (25%), Positives = 45/90 (50%) Frame = +3 Query: 201 RITVHYSTAGDDANHDDFLEYVIGDVLQHQDGLHQSWSTHCCHGESSRGTAAETSGTSDE 380 R+ +H G D +E ++ +++D L++ S+HC G+S A +T D Sbjct: 145 RVMMHQPLGGVSGQVSD-IEIQAAEMFRYRDKLNEIISSHC--GKSVEQIAKDT----DR 197 Query: 381 QIAADLKYARMLQDMEDLDVDTPPNDDEED 470 D + A+ ++DL + TP ++++ED Sbjct: 198 DFFLDAQQAKEYGLVDDLLLGTPASEEDED 227
>PTMA_MOUSE (P26350) Prothymosin alpha [Contains: Thymosin alpha]| Length = 110 Score = 32.3 bits (72), Expect = 0.85 Identities = 19/47 (40%), Positives = 22/47 (46%) Frame = +3 Query: 333 ESSRGTAAETSGTSDEQIAADLKYARMLQDMEDLDVDTPPNDDEEDD 473 E G E G DE+ A R+ +D ED DVDT EEDD Sbjct: 65 EEEEGDGEEEDGDEDEEAEAPTG-KRVAEDDEDDDVDTKKQKTEEDD 110
>PTMA_XENLA (Q5U274) Prothymosin alpha| Length = 111 Score = 32.3 bits (72), Expect = 0.85 Identities = 19/47 (40%), Positives = 22/47 (46%) Frame = +3 Query: 333 ESSRGTAAETSGTSDEQIAADLKYARMLQDMEDLDVDTPPNDDEEDD 473 E G E G DE+ A R+ +D ED DVDT EEDD Sbjct: 66 EEEEGDGEEEDGDEDEEAEAPTG-KRVAEDDEDDDVDTKKQKTEEDD 111
>YI32_AGRT7 (P05679) Insertion element IS136 hypothetical 21.2 kDa protein| Length = 194 Score = 31.6 bits (70), Expect = 1.4 Identities = 24/76 (31%), Positives = 32/76 (42%) Frame = +2 Query: 263 CDRRCSPTPGRPAPVLEHTLLPWGEQQRHSSRNLRNFR*TDRGRPQIRQDAAGYGGSGCG 442 CDR C+PTPGR PV + LP Q + L++ P+ R A Sbjct: 74 CDRACAPTPGRDPPV---SSLPNSRQPARQNPRLQHL-------PRSRACATDKANWAPR 123 Query: 443 HASQRR*GRRYKLCAF 490 + GRRY+L F Sbjct: 124 MTAS---GRRYRLAGF 136
>RUSC1_MOUSE (Q8BG26) RUN and SH3 domain-containing protein 1| Length = 893 Score = 30.4 bits (67), Expect = 3.2 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Frame = +2 Query: 278 SPTPGRPAPVLEHTL---LPWGEQQRHSSRNLRNFR*TDRGRPQIRQDAAGY 424 +P P P P L+ T+ L WGE+ S R TD P R A + Sbjct: 671 APAPSCPPPALQQTMQAVLHWGERLAQSLRGTSGESTTDSSTPSARPPAGSW 722
>PTMA_HUMAN (P06454) Prothymosin alpha [Contains: Thymosin alpha-1]| Length = 110 Score = 30.4 bits (67), Expect = 3.2 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = +3 Query: 333 ESSRGTAAETSGTSDEQIAADLKYARMLQDMEDLDVDTPPNDDEEDD 473 E G E G DE+ A R +D ED DVDT +EDD Sbjct: 65 EEEEGDGEEEDGDEDEE-AESATGKRAAEDDEDDDVDTKKQKTDEDD 110
>PTMA_PONPY (Q5R790) Prothymosin alpha [Contains: Thymosin alpha]| Length = 109 Score = 30.4 bits (67), Expect = 3.2 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = +3 Query: 333 ESSRGTAAETSGTSDEQIAADLKYARMLQDMEDLDVDTPPNDDEEDD 473 E G E G DE+ A R +D ED DVDT +EDD Sbjct: 64 EEEEGDGEEEDGDEDEE-AESATGKRAAEDDEDDDVDTKKQKTDEDD 109
>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)| Length = 1691 Score = 30.0 bits (66), Expect = 4.2 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +3 Query: 333 ESSRGTAAETSGTSDEQIAADLKYARMLQDMEDLDVDTPPNDDEED 470 ++++ TA E + TSDE + D DM D+D+ D+EE+ Sbjct: 565 DTAQATATENAETSDESVDMD-------DDMGSTDMDSDEEDEEEE 603
>ASPN_HUMAN (Q9BXN1) Asporin precursor (Periodontal ligament-associated protein| 1) (PLAP-1) Length = 379 Score = 30.0 bits (66), Expect = 4.2 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +3 Query: 411 MLQDMEDLDVDTPPNDDEEDD 473 ML+DMED D D +DD++DD Sbjct: 30 MLKDMEDTDDDDDDDDDDDDD 50
>PTMA_BOVIN (P01252) Prothymosin alpha [Contains: Thymosin alpha-1]| Length = 109 Score = 30.0 bits (66), Expect = 4.2 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = +3 Query: 333 ESSRGTAAETSGTSDEQIAADLKYARMLQDMEDLDVDTPPNDDEEDD 473 E G E G DE+ A R +D ED DVDT +EDD Sbjct: 64 EEEEGDGEEEDGDEDEEAEAATG-KRAAEDDEDDDVDTKKQKTDEDD 109
>FTSK_PSEPK (Q88FS8) DNA translocase ftsK| Length = 834 Score = 29.6 bits (65), Expect = 5.5 Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 23/127 (18%) Frame = +3 Query: 183 PPGAFRRITVHYSTAGDDANHDDFLEYVIGDVLQHQD----GLHQSWSTHCCHGESSRGT 350 PPG I VH + DD H + + + D G+ ++ S G G Sbjct: 706 PPGTSLPIRVHGAFVSDDEVHRTVEAWKLRGAPDYNDDILNGVEEAGSGFDGGGGGGEGD 765 Query: 351 AAETSGTSDEQIAADL-------------------KYARMLQDMEDLDVDTPPNDDEEDD 473 AET DE + L + ARM++ ME V TP N + + Sbjct: 766 DAETDALYDEAVQFVLESRRASISAVQRKLKIGYNRAARMIESMEMAGVVTPMNSNGSRE 825 Query: 474 ISCVPSP 494 + P Sbjct: 826 VIAPGGP 832
>CHSTB_RAT (P69478) Carbohydrate sulfotransferase 11 (EC 2.8.2.5) (Chondroitin| 4-O-sulfotransferase 1) (Chondroitin 4-sulfotransferase 1) (C4ST) (C4ST-1) (C4S-1) Length = 352 Score = 29.3 bits (64), Expect = 7.2 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = +3 Query: 228 GDDANHDDFLEYVIGDVLQHQDGLHQSWST-----HCCH 329 GDD ++F+ Y+I Q ++ ++ W T H CH Sbjct: 232 GDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCH 270
>CHSTB_MOUSE (Q9JME2) Carbohydrate sulfotransferase 11 (EC 2.8.2.5) (Chondroitin| 4-O-sulfotransferase 1) (Chondroitin 4-sulfotransferase 1) (C4ST) (C4ST-1) (C4S-1) Length = 352 Score = 29.3 bits (64), Expect = 7.2 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = +3 Query: 228 GDDANHDDFLEYVIGDVLQHQDGLHQSWST-----HCCH 329 GDD ++F+ Y+I Q ++ ++ W T H CH Sbjct: 232 GDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCH 270
>CHSTB_HUMAN (Q9NPF2) Carbohydrate sulfotransferase 11 (EC 2.8.2.5) (Chondroitin| 4-O-sulfotransferase 1) (Chondroitin 4-sulfotransferase 1) (C4ST) (C4ST-1) (C4S-1) Length = 352 Score = 29.3 bits (64), Expect = 7.2 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = +3 Query: 228 GDDANHDDFLEYVIGDVLQHQDGLHQSWST-----HCCH 329 GDD ++F+ Y+I Q ++ ++ W T H CH Sbjct: 232 GDDVKFEEFVAYLIDPHTQREEPFNEHWQTVYSLCHPCH 270
>SCRL2_ORYSA (Q5QNA6) SCAR-like protein 2| Length = 1334 Score = 29.3 bits (64), Expect = 7.2 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +3 Query: 276 VLQHQDGLHQSWSTHCCHGESSRGTAAETSGTSDEQIAADLKYARMLQDM 425 V+ H++G H S + H S+ +GTS + + DLK + +L DM Sbjct: 299 VVPHENG-HDKLSNNNLHKLSNTPLHTRLNGTSADDLGDDLKQSSLLDDM 347
>FKBP4_ASPFU (Q4WMV5) FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) Length = 489 Score = 28.9 bits (63), Expect = 9.3 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 366 GTSDEQIAADLKYARMLQDMEDLDVDTPPNDDEED 470 G SD++ A LK A L+++ED D D D+E+ Sbjct: 91 GPSDKEKARKLKEAAALKELEDEDEDDDSEGDDEN 125
>M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kinase kinase 4| (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK) (Nck-interacting kinase) Length = 1233 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 334 RAAEAQQQKPPELQMNRSRPTSNTP 408 R AQQQ PP Q +RS+P+ + P Sbjct: 497 RRPHAQQQPPPPQQQDRSKPSFHAP 521
>K1688_MOUSE (P59281) Protein KIAA1688| Length = 1107 Score = 28.9 bits (63), Expect = 9.3 Identities = 17/49 (34%), Positives = 19/49 (38%) Frame = +2 Query: 290 GRPAPVLEHTLLPWGEQQRHSSRNLRNFR*TDRGRPQIRQDAAGYGGSG 436 G P P L L W QQ H F RG +QD +GY G Sbjct: 541 GTPEPFLAQARLAWEAQQAH-------FHMKQRGSWDSQQDGSGYESDG 582
>YG1B_YEAST (P53210) Hypothetical 34.7 kDa protein in MSB2-UGA1 intergenic| region Length = 297 Score = 28.9 bits (63), Expect = 9.3 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +3 Query: 399 KYARMLQDMEDLDVDTPPNDDEEDD 473 +++ D D ++DTP NDD++DD Sbjct: 135 RFSETNDDSTDEEIDTPINDDDDDD 159 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,910,381 Number of Sequences: 219361 Number of extensions: 1745512 Number of successful extensions: 5987 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5386 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5948 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
