ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart10c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188704.1| Oryza sativa (japonica cultivar-group), predic... 78 3e-11
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
3dbj|AP003210.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
4dbj|AK122130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
5dbj|AK067723.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
6dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 52 0.002
7emb|AL162756.2|NMA5Z2491 Neisseria meningitidis serogroup A stra... 44 0.42
8gb|AE002098.2| Neisseria meningitidis MC58, complete genome 44 0.42
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
10dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
11gb|BC054659.1| Danio rerio LSM14 homolog A (SCD6, S. cerevisiae)... 42 1.7
12gb|BC065337.1| Danio rerio LSM14 homolog A (SCD6, S. cerevisiae)... 42 1.7
13ref|NM_200425.2| Danio rerio LSM14 homolog A (SCD6, S. cerevisia... 42 1.7
14gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.7
15dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.7
16gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.7
17gb|M33818.1|PSECARAA P.aeruginosa carbamoylphosphate synthetase ... 42 1.7
18gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genom... 40 6.6
19gb|AC163680.2| Mus musculus BAC clone RP24-111M15 from chromosom... 40 6.6
20gb|BC052252.1| Homo sapiens exosome component 6, mRNA (cDNA clon... 40 6.6
21ref|XM_483250.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
22ref|XM_463123.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
23gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.6
24ref|XM_517156.1| PREDICTED: Pan troglodytes hypothetical protein... 40 6.6
25ref|XM_472239.1| Oryza sativa (japonica cultivar-group), predic... 40 6.6
26ref|NM_058219.2| Homo sapiens exosome component 6 (EXOSC6), mRNA 40 6.6
27gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.6
28gb|AC152062.6| Mus musculus BAC clone RP23-341K9 from chromosome... 40 6.6
29gb|AC154907.3| Mus musculus BAC clone RP23-312K18 from chromosom... 40 6.6
30gb|AF448724.1| Sinorhizobium meliloti phage PBC5, complete genome 40 6.6
31ref|XM_656414.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.6
32gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.6
33gb|BC039194.1| Homo sapiens cDNA clone IMAGE:4281687, with appar... 40 6.6
34emb|CR391920.11| Zebrafish DNA sequence from clone CH211-213B7 i... 40 6.6
35emb|X70914.1|MFSODA M.fortuitum sod gene 40 6.6
36gb|AC163635.5| Mus musculus BAC clone RP23-183F13 from chromosom... 40 6.6
37emb|BX842604.1|OSJN00294 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
38emb|AL662790.21| Mouse DNA sequence from clone RP23-53E2 on chro... 40 6.6
39gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.6
40emb|CR857354.1| Pongo pygmaeus mRNA; cDNA DKFZp469F0232 (from cl... 40 6.6
41ref|NM_205122.1| Gallus gallus protein phosphatase 1, catalytic ... 40 6.6
42gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, comple... 40 6.6
43gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 6.6
44gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 6.6
45dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
46dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
47dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
48gb|AC093491.3| Homo sapiens chromosome 16 clone RP11-410N2, comp... 40 6.6
49ref|XM_343166.2| PREDICTED: Rattus norvegicus melanoma associate... 40 6.6
50gb|AC009060.7|AC009060 Homo sapiens chromosome 16 clone RP11-296... 40 6.6
51gb|AC009145.4|AC009145 Homo sapiens chromosome 16 clone RP11-556... 40 6.6
52gb|AC108439.22| Mus musculus chromosome 8, clone RP23-214F1, com... 40 6.6
53emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, com... 40 6.6
54dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
55dbj|AK105435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
56dbj|AK070268.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
57dbj|AK069225.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
58emb|AL442103.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.6
59gb|AC124095.7| Mus musculus chromosome 1, clone RP23-245G9, comp... 40 6.6
60emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
61gb|AC140229.3| Mus musculus BAC clone RP24-488O12 from 10, compl... 40 6.6
62dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynt... 40 6.6
63gb|AC163629.5| Mus musculus BAC clone RP24-542G7 from chromosome... 40 6.6
64dbj|D37987.1|CHK130KDC Chicken mRNA for catalytic subunit of chi... 40 6.6 
>ref|NM_188704.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3009

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 98/118 (83%), Gaps = 6/118 (5%)
 Strand = Plus / Plus

                                                                       
Query: 366 aaccaggacggcctctacctgcttgacgccaagcgcgcgctcaccgcctc------cgcg 419
           ||||||||||| || | |||||| ||||| | |||||||||| ||||| |      ||||
Sbjct: 70  aaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcg 129

                                                                     
Query: 420 ctcgcggactggaacccccgcgacgccacgccctgcggttggacgggagtctcctgcg 477
           || |||||||||||| | |||||||||||||||||| | |||||||| ||||||||||
Sbjct: 130 ctggcggactggaacgcgcgcgacgccacgccctgcagctggacgggcgtctcctgcg 187
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 98/118 (83%), Gaps = 6/118 (5%)
 Strand = Plus / Plus

                                                                           
Query: 366     aaccaggacggcctctacctgcttgacgccaagcgcgcgctcaccgcctc------cgcg 419
               ||||||||||| || | |||||| ||||| | |||||||||| ||||| |      ||||
Sbjct: 7738301 aaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcg 7738360

                                                                         
Query: 420     ctcgcggactggaacccccgcgacgccacgccctgcggttggacgggagtctcctgcg 477
               || |||||||||||| | |||||||||||||||||| | |||||||| ||||||||||
Sbjct: 7738361 ctggcggactggaacgcgcgcgacgccacgccctgcagctggacgggcgtctcctgcg 7738418
to top
>dbj|AP003210.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0010K01
          Length = 144404

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 98/118 (83%), Gaps = 6/118 (5%)
 Strand = Plus / Plus

                                                                         
Query: 366   aaccaggacggcctctacctgcttgacgccaagcgcgcgctcaccgcctc------cgcg 419
             ||||||||||| || | |||||| ||||| | |||||||||| ||||| |      ||||
Sbjct: 40882 aaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcg 40941

                                                                       
Query: 420   ctcgcggactggaacccccgcgacgccacgccctgcggttggacgggagtctcctgcg 477
             || |||||||||||| | |||||||||||||||||| | |||||||| ||||||||||
Sbjct: 40942 ctggcggactggaacgcgcgcgacgccacgccctgcagctggacgggcgtctcctgcg 40999
to top
>dbj|AK122130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133B05, full
           insert sequence
          Length = 3604

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 98/118 (83%), Gaps = 6/118 (5%)
 Strand = Plus / Plus

                                                                       
Query: 366 aaccaggacggcctctacctgcttgacgccaagcgcgcgctcaccgcctc------cgcg 419
           ||||||||||| || | |||||| ||||| | |||||||||| ||||| |      ||||
Sbjct: 229 aaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcg 288

                                                                     
Query: 420 ctcgcggactggaacccccgcgacgccacgccctgcggttggacgggagtctcctgcg 477
           || |||||||||||| | |||||||||||||||||| | |||||||| ||||||||||
Sbjct: 289 ctggcggactggaacgcgcgcgacgccacgccctgcagctggacgggcgtctcctgcg 346
to top
>dbj|AK067723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116J03, full
           insert sequence
          Length = 3671

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 98/118 (83%), Gaps = 6/118 (5%)
 Strand = Plus / Plus

                                                                       
Query: 366 aaccaggacggcctctacctgcttgacgccaagcgcgcgctcaccgcctc------cgcg 419
           ||||||||||| || | |||||| ||||| | |||||||||| ||||| |      ||||
Sbjct: 174 aaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcg 233

                                                                     
Query: 420 ctcgcggactggaacccccgcgacgccacgccctgcggttggacgggagtctcctgcg 477
           || |||||||||||| | |||||||||||||||||| | |||||||| ||||||||||
Sbjct: 234 ctggcggactggaacgcgcgcgacgccacgccctgcagctggacgggcgtctcctgcg 291
to top
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 298    tcctccccctcctgctgctcggcgtg 323
              ||||||||||||||||||||||||||
Sbjct: 805011 tcctccccctcctgctgctcggcgtg 805036
to top
>emb|AL162756.2|NMA5Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              5/7
          Length = 329861

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 309    ctgctgctcggcgtggcgggca 330
              ||||||||||||||||||||||
Sbjct: 261706 ctgctgctcggcgtggcgggca 261685
to top
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 309     ctgctgctcggcgtggcgggca 330
               ||||||||||||||||||||||
Sbjct: 1508739 ctgctgctcggcgtggcgggca 1508718
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 276      gacgagaccaccatggccggcttcctccccctcc 309
                ||||||||| || |||||||| ||||||||||||
Sbjct: 17664329 gacgagacccccctggccggcctcctccccctcc 17664362
to top
>dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1005_D12
          Length = 150588

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 276    gacgagaccaccatggccggcttcctccccctcc 309
              ||||||||| || |||||||| ||||||||||||
Sbjct: 113051 gacgagacccccctggccggcctcctccccctcc 113084
to top
>gb|BC054659.1| Danio rerio LSM14 homolog A (SCD6, S. cerevisiae), mRNA (cDNA clone
           MGC:66203 IMAGE:5914276), complete cds
          Length = 1883

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 305 cctcctgctgctcggcgtggc 325
           |||||||||||||||||||||
Sbjct: 793 cctcctgctgctcggcgtggc 813
to top
>gb|BC065337.1| Danio rerio LSM14 homolog A (SCD6, S. cerevisiae), mRNA (cDNA clone
           MGC:77302 IMAGE:6965908), complete cds
          Length = 2050

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 305 cctcctgctgctcggcgtggc 325
           |||||||||||||||||||||
Sbjct: 813 cctcctgctgctcggcgtggc 833
to top
>ref|NM_200425.2| Danio rerio LSM14 homolog A (SCD6, S. cerevisiae) (lsm14a), mRNA
          Length = 2050

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 305 cctcctgctgctcggcgtggc 325
           |||||||||||||||||||||
Sbjct: 813 cctcctgctgctcggcgtggc 833
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 405     ctcaccgcctccgcgctcgcg 425
               |||||||||||||||||||||
Sbjct: 2164306 ctcaccgcctccgcgctcgcg 2164286
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 399     cgcgcgctcaccgcctccgcg 419
               |||||||||||||||||||||
Sbjct: 4093927 cgcgcgctcaccgcctccgcg 4093947
to top
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 310     tgctgctcggcgtggcgggca 330
               |||||||||||||||||||||
Sbjct: 2192572 tgctgctcggcgtggcgggca 2192592
to top
>gb|M33818.1|PSECARAA P.aeruginosa carbamoylphosphate synthetase (carA and carB) genes,
            complete cds, and 5' end
          Length = 1747

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 354  gcgctcgggctcaaccaggacggcctctacctg 386
            |||||||||||||||| ||||||| ||| ||||
Sbjct: 1211 gcgctcgggctcaacccggacggcatcttcctg 1243
to top
>gb|AC133860.5| Oryza sativa chromosome 3 BAC OSJNBa0091E13 genomic sequence, complete
             sequence
          Length = 157397

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   ccccatccatctccatctca 137
             ||||||||||||||||||||
Sbjct: 43004 ccccatccatctccatctca 43023
to top
>gb|AC163680.2| Mus musculus BAC clone RP24-111M15 from chromosome 8, complete sequence
          Length = 207917

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    tgtcctctcccccatccatc 128
              ||||||||||||||||||||
Sbjct: 139121 tgtcctctcccccatccatc 139140
to top
>gb|BC052252.1| Homo sapiens exosome component 6, mRNA (cDNA clone MGC:59978
           IMAGE:6256140), complete cds
          Length = 1729

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 cgcgctcaccgcctccgcgctcgc 424
           ||||||||||||| ||||||||||
Sbjct: 510 cgcgctcaccgccgccgcgctcgc 533
to top
>ref|XM_483250.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1974

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 450 ccctgcggttggacgggagtctcctgcgtcgacggc 485
           |||||||| ||| |||| ||| ||||||||||||||
Sbjct: 175 ccctgcggctggtcgggcgtcacctgcgtcgacggc 210
to top
>ref|XM_463123.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 773

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 ccccatccatctccatctca 137
           ||||||||||||||||||||
Sbjct: 417 ccccatccatctccatctca 436
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 311     gctgctcggcgtggcgggca 330
               ||||||||||||||||||||
Sbjct: 1517110 gctgctcggcgtggcgggca 1517129
to top
>ref|XM_517156.1| PREDICTED: Pan troglodytes hypothetical protein XP_517156
           (LOC461177), mRNA
          Length = 873

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 gccggcttcctccccctcct 310
           ||||||||||||||||||||
Sbjct: 336 gccggcttcctccccctcct 317
to top
>ref|XM_472239.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2403

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 122  atccatctccatctcaataa 141
            ||||||||||||||||||||
Sbjct: 1497 atccatctccatctcaataa 1478
to top
>ref|NM_058219.2| Homo sapiens exosome component 6 (EXOSC6), mRNA
          Length = 1729

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 cgcgctcaccgcctccgcgctcgc 424
           ||||||||||||| ||||||||||
Sbjct: 510 cgcgctcaccgccgccgcgctcgc 533
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     tcctgctgctcggcgtggcg 326
               ||||||||||||||||||||
Sbjct: 4875415 tcctgctgctcggcgtggcg 4875434
to top
>gb|AC152062.6| Mus musculus BAC clone RP23-341K9 from chromosome 10, complete sequence
          Length = 240781

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    cgcgcgctcaccgcctccgc 418
              ||||||||||||||||||||
Sbjct: 210404 cgcgcgctcaccgcctccgc 210423
to top
>gb|AC154907.3| Mus musculus BAC clone RP23-312K18 from chromosome 8, complete sequence
          Length = 182534

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   tgtcctctcccccatccatc 128
             ||||||||||||||||||||
Sbjct: 27191 tgtcctctcccccatccatc 27210
to top
>gb|AF448724.1| Sinorhizobium meliloti phage PBC5, complete genome
          Length = 57416

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   ctcgccgtcgccaatgccga 191
             ||||||||||||||||||||
Sbjct: 33015 ctcgccgtcgccaatgccga 33034
to top
>ref|XM_656414.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3902.2), mRNA
          Length = 1596

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 tcgccgtcgccaatgccgac 192
           ||||||||||||||||||||
Sbjct: 758 tcgccgtcgccaatgccgac 777
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 118      ccccatccatctccatctca 137
                ||||||||||||||||||||
Sbjct: 22625142 ccccatccatctccatctca 22625123
to top
>gb|BC039194.1| Homo sapiens cDNA clone IMAGE:4281687, with apparent retained
           intron
          Length = 1421

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 401 cgcgctcaccgcctccgcgctcgc 424
           ||||||||||||| ||||||||||
Sbjct: 525 cgcgctcaccgccgccgcgctcgc 548
to top
>emb|CR391920.11| Zebrafish DNA sequence from clone CH211-213B7 in linkage group 16,
              complete sequence
          Length = 199710

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    ctcccccatccatctccatc 134
              ||||||||||||||||||||
Sbjct: 149319 ctcccccatccatctccatc 149338
to top
>emb|X70914.1|MFSODA M.fortuitum sod gene
          Length = 1478

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 304 ccctcctgctgctcggcgtg 323
           ||||||||||||||||||||
Sbjct: 92  ccctcctgctgctcggcgtg 111
to top
>gb|AC163635.5| Mus musculus BAC clone RP23-183F13 from chromosome 17, complete sequence
          Length = 185844

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    caccatggccggcttcctcc 303
              ||||||||||||||||||||
Sbjct: 183511 caccatggccggcttcctcc 183530
to top
>emb|BX842604.1|OSJN00294 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1160F02, complete
              sequence
          Length = 139971

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 113    ctctcccccatccatctccatctc 136
              ||||||||| ||||||||||||||
Sbjct: 106285 ctctcccccctccatctccatctc 106308
to top
>emb|AL662790.21| Mouse DNA sequence from clone RP23-53E2 on chromosome 11 Contains the 5'
              end of a novel pseudogene (similar to hypothetical protein
              TR:Q8C517), 3 novel pseudogenes (similar to hypothetical
              protein TR:Q8C517) and the 5' end of the Col1a1 gene for
              pro-collagen type I alpha 1, complete sequence
          Length = 133405

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 111    tcctctcccccatccatctccatc 134
              ||||| ||||||||||||||||||
Sbjct: 125672 tcctcacccccatccatctccatc 125695
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 379     tctacctgcttgacgccaagcgcg 402
               |||||||||| |||||||||||||
Sbjct: 2736357 tctacctgctggacgccaagcgcg 2736334
to top
>emb|CR857354.1| Pongo pygmaeus mRNA; cDNA DKFZp469F0232 (from clone DKFZp469F0232)
          Length = 1740

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 gccggcttcctccccctcct 310
           ||||||||||||||||||||
Sbjct: 58  gccggcttcctccccctcct 39
to top
>ref|NM_205122.1| Gallus gallus protein phosphatase 1, catalytic subunit, beta
           isoform (PPP1CB), mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 298 tcctccccctcctgctgctcggcg 321
           |||||| |||||||||||||||||
Sbjct: 104 tcctcctcctcctgctgctcggcg 127
to top
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence
          Length = 141442

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   gccggcttcctccccctcct 310
             ||||||||||||||||||||
Sbjct: 27641 gccggcttcctccccctcct 27660
to top
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 384     ctgcttgacgccaagcgcgc 403
               ||||||||||||||||||||
Sbjct: 3094302 ctgcttgacgccaagcgcgc 3094283
to top
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
               complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 401     cgcgctcaccgcctccgcgctcgc 424
               ||||||||||||| ||||||||||
Sbjct: 1288366 cgcgctcaccgccgccgcgctcgc 1288343
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 113    ctctcccccatccatctccatctc 136
              ||||||||| ||||||||||||||
Sbjct: 106285 ctctcccccctccatctccatctc 106308
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 450      ccctgcggttggacgggagtctcctgcgtcgacggc 485
                |||||||| ||| |||| ||| ||||||||||||||
Sbjct: 25053768 ccctgcggctggtcgggcgtcacctgcgtcgacggc 25053803
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 118      ccccatccatctccatctca 137
                ||||||||||||||||||||
Sbjct: 22618171 ccccatccatctccatctca 22618152
to top
>gb|AC093491.3| Homo sapiens chromosome 16 clone RP11-410N2, complete sequence
          Length = 162176

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 401    cgcgctcaccgcctccgcgctcgc 424
              ||||||||||||| ||||||||||
Sbjct: 160779 cgcgctcaccgccgccgcgctcgc 160802
to top
>ref|XM_343166.2| PREDICTED: Rattus norvegicus melanoma associated antigen (mutated)
           1 (predicted) (Mum1_predicted), mRNA
          Length = 2935

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 cgcgcgctcaccgcctccgc 418
           ||||||||||||||||||||
Sbjct: 302 cgcgcgctcaccgcctccgc 283
to top
>gb|AC009060.7|AC009060 Homo sapiens chromosome 16 clone RP11-296I10, complete sequence
          Length = 180596

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 401    cgcgctcaccgcctccgcgctcgc 424
              ||||||||||||| ||||||||||
Sbjct: 152698 cgcgctcaccgccgccgcgctcgc 152675
to top
>gb|AC009145.4|AC009145 Homo sapiens chromosome 16 clone RP11-556H2, complete sequence
          Length = 182302

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   gtcctctcccccatccatct 129
             ||||||||||||||||||||
Sbjct: 16537 gtcctctcccccatccatct 16556
to top
>gb|AC108439.22| Mus musculus chromosome 8, clone RP23-214F1, complete sequence
          Length = 205732

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   tcctccccctcctgctgctc 317
             ||||||||||||||||||||
Sbjct: 45710 tcctccccctcctgctgctc 45729
to top
>emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, complete sequence
          Length = 212599

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    ccatccatctccatctcaat 139
              ||||||||||||||||||||
Sbjct: 142371 ccatccatctccatctcaat 142390
to top
>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0025J22
          Length = 175355

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 450    ccctgcggttggacgggagtctcctgcgtcgacggc 485
              |||||||| ||| |||| ||| ||||||||||||||
Sbjct: 109884 ccctgcggctggtcgggcgtcacctgcgtcgacggc 109919
to top
>dbj|AK105435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F11, full
            insert sequence
          Length = 2699

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 122  atccatctccatctcaataa 141
            ||||||||||||||||||||
Sbjct: 1542 atccatctccatctcaataa 1523
to top
>dbj|AK070268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E14, full
           insert sequence
          Length = 773

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 ccccatccatctccatctca 137
           ||||||||||||||||||||
Sbjct: 417 ccccatccatctccatctca 436
to top
>dbj|AK069225.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013E16, full
           insert sequence
          Length = 1268

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 113 ctctcccccatccatctccatctc 136
           ||||||||| ||||||||||||||
Sbjct: 128 ctctcccccctccatctccatctc 151
to top
>emb|AL442103.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0102C09, complete
             sequence
          Length = 72636

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 113   ctctcccccatccatctccatctc 136
             ||||||||| ||||||||||||||
Sbjct: 53162 ctctcccccctccatctccatctc 53185
to top
>gb|AC124095.7| Mus musculus chromosome 1, clone RP23-245G9, complete sequence
          Length = 198825

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 131    catctcaataacagcacccaccaa 154
              |||||||||| |||||||||||||
Sbjct: 101719 catctcaataccagcacccaccaa 101742
to top
>emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0068L06,
             complete sequence
          Length = 145517

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 113   ctctcccccatccatctccatctc 136
             ||||||||| ||||||||||||||
Sbjct: 37534 ctctcccccctccatctccatctc 37557
to top
>gb|AC140229.3| Mus musculus BAC clone RP24-488O12 from 10, complete sequence
          Length = 156601

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   cgcgcgctcaccgcctccgc 418
             ||||||||||||||||||||
Sbjct: 76868 cgcgcgctcaccgcctccgc 76849
to top
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster,
             partial and complete cds
          Length = 113234

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   cgacgcccatgtcgccgtcc 208
             ||||||||||||||||||||
Sbjct: 23991 cgacgcccatgtcgccgtcc 24010
to top
>gb|AC163629.5| Mus musculus BAC clone RP24-542G7 from chromosome 17, complete sequence
          Length = 198902

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    caccatggccggcttcctcc 303
              ||||||||||||||||||||
Sbjct: 187220 caccatggccggcttcctcc 187201
to top
>dbj|D37987.1|CHK130KDC Chicken mRNA for catalytic subunit of chicken gizzard type-1 delta
           protein phosphatase, complete cds
          Length = 1338

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 298 tcctccccctcctgctgctcggcg 321
           |||||| |||||||||||||||||
Sbjct: 104 tcctcctcctcctgctgctcggcg 127


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,783,396
Number of Sequences: 3902068
Number of extensions: 2783396
Number of successful extensions: 72411
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71546
Number of HSP's gapped (non-prelim): 865
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top