>PCDG3_PANTR (Q5DRB7) Protocadherin gamma A3 precursor (PCDH-gamma-A3)|
          Length = 932

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 89  RVLETTSDDQGPPHAVLLTQD----DQSDAAADVTLPALPTPAGENIVLSHGAPTP 244
           ++L T SD   PP +  ++ +    DQ+D A ++  PALPT     + L+  +  P
Sbjct: 529 KLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584

>PCDG3_HUMAN (Q9Y5H0) Protocadherin gamma A3 precursor (PCDH-gamma-A3)|
          Length = 932

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 89  RVLETTSDDQGPPHAVLLTQD----DQSDAAADVTLPALPTPAGENIVLSHGAPTP 244
           ++L T SD   PP +  ++ +    DQ+D A ++  PALPT     + L+  +  P
Sbjct: 529 KLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584

>SKI_HORSE (Q9TUG2) Ski oncogene (C-ski)|
          Length = 730

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
 Frame = +2

Query: 101 TTSDDQGPPHAVLLTQDD-------QSDAAADVTLPALPTPAGENIVLSHGAPTPMLRLP 259
           +TSD + PPH   L +D        ++  A +V   AL  PA + +V S    T + R P
Sbjct: 386 STSDKELPPHLPALIRDSFYSYKSFETGVAPNV---ALAPPAQQKVVSSPPCATVVSRAP 442

Query: 260 SHRSTCXXXXXXXXXXXXGLARVHPAVDVVPAELARGEXQEPREAVAE 403
              +TC             LA   P     P  +A  E  +  EA  E
Sbjct: 443 EPLATCVQPRKRK------LAVDTPGAPETPVPVAAPEDDKDSEAEVE 484

>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)|
          Length = 657

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -1

Query: 177 TSAAASD*SSWVRRTAWGGPWSSEVVSRTRQLAT 76
           T+AA  + ++ VRRTA G   +S+VVS TR  AT
Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTRGEAT 419

>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 152  DQSDAAADVTLPALPTPAGENIVLSHGAPTPMLRLPSH 265
            D   AA + + P++PTP G  +   H   T M ++  H
Sbjct: 2302 DSPGAATEYSEPSVPTPPGAGVKEEHDQSTQMSKVKKH 2339

>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1|
           (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1)
          Length = 1600

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 95  LETTSDDQGPPHAVLLTQDDQSDAAADVTLPALPTP---AGENIVLSHGAPTP 244
           LE   + + P  AV++  DD+S  AA    P LP P    G     S  +PTP
Sbjct: 222 LEPQPNGESPQVAVIIRPDDRSQGAAIGGRPGLPGPEHSPGTESQPSSPSPTP 274

>PCDG8_HUMAN (Q9Y5G5) Protocadherin gamma A8 precursor (PCDH-gamma-A8)|
          Length = 932

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 89  RVLETTSDDQGPPHAVLLTQD----DQSDAAADVTLPALPTPAGENIVLS 226
           ++L T SD   PP +  ++      DQ+D A ++  PALPT     + L+
Sbjct: 529 QLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELA 578

>PCDG9_HUMAN (Q9Y5G4) Protocadherin gamma A9 precursor (PCDH-gamma-A9)|
          Length = 932

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +2

Query: 95  LETTSDDQGPPH-----AVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTP 244
           ++ T+ D G P      ++ L   DQ+D A ++  PALPT     + L+  +  P
Sbjct: 530 MQVTASDSGSPPLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584

>PCDGA_PANTR (Q5DRC1) Protocadherin gamma A10 precursor (PCDH-gamma-A10)|
          Length = 936

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +2

Query: 95  LETTSDDQGPPH-----AVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTP 244
           ++ T+ D G P      ++ L   DQ+D A ++  PALPT     + L+  +  P
Sbjct: 534 MQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 588

>PCDGA_HUMAN (Q9Y5H3) Protocadherin gamma A10 precursor (PCDH-gamma-A10)|
          Length = 936

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +2

Query: 95  LETTSDDQGPPH-----AVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTP 244
           ++ T+ D G P      ++ L   DQ+D A ++  PALPT     + L+  +  P
Sbjct: 534 MQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 588

>PDC6I_HUMAN (Q8WUM4) Programmed cell death 6-interacting protein|
           (PDCD6-interacting protein) (ALG-2-interacting protein
           1) (Hp95)
          Length = 868

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 140 LTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTPMLRLP 259
           L +D Q   A + + P++PTPA ++      APTP    P
Sbjct: 705 LLKDLQQSIAREPSAPSIPTPAYQSSPAGGHAPTPPTPAP 744


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,792,450
Number of Sequences: 219361
Number of extensions: 526777
Number of successful extensions: 2561
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2560
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)