ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart08h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC021542.8| Homo sapiens chromosome 15, clone RP11-507B12, co... 40 0.23
2emb|Z82205.1|HS363L9 Human DNA sequence from clone RP3-363L9 on ... 38 0.90
3gb|AC009407.8| Homo sapiens BAC clone RP11-223I10 from 2, comple... 38 0.90
4gb|AC137853.21| Mus musculus chromosome 19, clone RP24-276L14, c... 36 3.5
5gb|DQ479917.1| Mus musculus strain BTBR T+ tf/J dual specificity... 36 3.5
6gb|AC073370.7| Homo sapiens chromosome 10 clone RP11-472G21, com... 36 3.5
7gb|AY182373.1| Acinonyx jubatus Hox8 early enhancer sequence 36 3.5
8gb|AY182372.1| Panthera pardus Hox8 early enhancer sequence 36 3.5

>gb|AC021542.8| Homo sapiens chromosome 15, clone RP11-507B12, complete sequence
          Length = 80114

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 10   cctttgccaccctcccttcc 29
            ||||||||||||||||||||
Sbjct: 2977 cctttgccaccctcccttcc 2996



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>emb|Z82205.1|HS363L9 Human DNA sequence from clone RP3-363L9 on chromosome X Contains a
              N-acetyltransferase 5 (ARD1 homolog, S. cerevisiae) (NAT5)
              pseudogene, complete sequence
          Length = 125971

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 7      gttcctttgccaccctccc 25
              |||||||||||||||||||
Sbjct: 120473 gttcctttgccaccctccc 120491



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>gb|AC009407.8| Homo sapiens BAC clone RP11-223I10 from 2, complete sequence
          Length = 202568

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     ccaccctcccttccgttcc 34
              |||||||||||||||||||
Sbjct: 187543 ccaccctcccttccgttcc 187561



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>gb|AC137853.21| Mus musculus chromosome 19, clone RP24-276L14, complete sequence
          Length = 173430

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    cctttgccaccctccctt 27
             ||||||||||||||||||
Sbjct: 10437 cctttgccaccctccctt 10454



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>gb|DQ479917.1| Mus musculus strain BTBR T+ tf/J dual specificity phosphatase 5 gene,
            complete cds
          Length = 5331

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 10   cctttgccaccctccctt 27
            ||||||||||||||||||
Sbjct: 2516 cctttgccaccctccctt 2533



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>gb|AC073370.7| Homo sapiens chromosome 10 clone RP11-472G21, complete sequence
          Length = 178253

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 13     ttgccaccctcccttccg 30
              ||||||||||||||||||
Sbjct: 148105 ttgccaccctcccttccg 148122



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>gb|AY182373.1| Acinonyx jubatus Hox8 early enhancer sequence
          Length = 906

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 12  tttgccaccctcccttcc 29
           ||||||||||||||||||
Sbjct: 610 tttgccaccctcccttcc 593



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>gb|AY182372.1| Panthera pardus Hox8 early enhancer sequence
          Length = 906

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 12  tttgccaccctcccttcc 29
           ||||||||||||||||||
Sbjct: 610 tttgccaccctcccttcc 593


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 265,821
Number of Sequences: 3902068
Number of extensions: 265821
Number of successful extensions: 56985
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56972
Number of HSP's gapped (non-prelim): 13
length of query: 36
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 16
effective length of database: 17,155,003,908
effective search space: 274480062528
effective search space used: 274480062528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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