ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart07h06 |
|---|---|
| Clone Library Name | barley_pub |
>RETO_PAPSO (P93479) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 535 Score = 60.8 bits (146), Expect = 2e-09 Identities = 30/90 (33%), Positives = 50/90 (55%) Frame = +3 Query: 183 TPSSPSFTPLLKSSIRNPKFFTPSTVRPLYIVTPTNASHVQAAVLCGRRSGLRIXVRSGG 362 T ++ + LL +S++NP F P+ +P +IV P + + + V C R I +RSGG Sbjct: 48 TDTNSDYFKLLHASMQNPLFAKPTVSKPSFIVMPGSKEELSSTVHCCTRESWTIRLRSGG 107 Query: 363 HDYXGLSYRSVRAEAFAVLDLSSLRSVRVD 452 H Y GLSY + F ++D+ +L + +D Sbjct: 108 HSYEGLSYTA--DTPFVIVDMMNLNRISID 135
>RETO_ESCCA (P30986) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 538 Score = 58.9 bits (141), Expect = 6e-09 Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 2/108 (1%) Frame = +3 Query: 141 LSCLSAS-IPRQLVFTPSSPS-FTPLLKSSIRNPKFFTPSTVRPLYIVTPTNASHVQAAV 314 LSCL+ + + VF+ S S F L SI+NP F +P I+ P + + + Sbjct: 28 LSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTI 87 Query: 315 LCGRRSGLRIXVRSGGHDYXGLSYRSVRAEAFAVLDLSSLRSVRVDAQ 458 C R+ I +RSGGH Y GLSY S F ++DL +L V +D + Sbjct: 88 RCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLE 133
>ESR1_SPAAU (Q9PVZ9) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 579 Score = 34.7 bits (78), Expect = 0.12 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = +3 Query: 96 YASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLYI 275 Y++ + + G SD L L + LVF PSSP +P ++ + + + +T P+Y Sbjct: 43 YSAPLDAHGPPSDGSLQSLGSGPNSPLVFVPSSPHLSPFMQPANHH---YLETTSTPIYS 99 Query: 276 VTPTNASHVQAAVLCG 323 V P++ V CG Sbjct: 100 V-PSSQHSVSREDQCG 114
>ESR1_OREAU (P50240) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 583 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +3 Query: 93 CYASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLY 272 CY++ + + G SD L L + LVF PSSP +P + + + +T P+Y Sbjct: 42 CYSAPLDAHGPLSDGSLQSLGSGPTSPLVFVPSSPRLSPFMHPPSHH---YLETTSTPVY 98
>ESR1_ORENI (Q9YH33) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 585 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +3 Query: 93 CYASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLY 272 CY++ + + G SD L L + LVF PSSP +P + + + +T P+Y Sbjct: 42 CYSAPLDAHGPLSDGSLQSLGSGPTSPLVFVPSSPRLSPFMHPPSHH---YLETTSTPVY 98
>HDNO_ARTOX (P08159) 6-hydroxy-D-nicotine oxidase (EC 1.5.3.6) (6-HDNO)| Length = 458 Score = 33.5 bits (75), Expect = 0.27 Identities = 22/64 (34%), Positives = 31/64 (48%) Frame = +3 Query: 261 RPLYIVTPTNASHVQAAVLCGRRSGLRIXVRSGGHDYXGLSYRSVRAEAFAVLDLSSLRS 440 RP I +A V +V +GL I VRSGGH+ G + + VLDL + S Sbjct: 37 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATN----DGGIVLDLRLMNS 92 Query: 441 VRVD 452 + +D Sbjct: 93 IHID 96
>ESR1_PAGMA (O42132) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 581 Score = 31.6 bits (70), Expect = 1.0 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +3 Query: 96 YASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLY- 272 Y++ + + G SD L L + LVF PSSP +P + + + +T P+Y Sbjct: 43 YSAPLDAHGPPSDGSLQSLGSGPNSPLVFVPSSPRLSPFMHPPTHH---YLETTSTPVYR 99 Query: 273 IVTPTNASHVQAAVLCG 323 P++ V CG Sbjct: 100 SSVPSSQQSVSREDQCG 116
>YEK3_SCHPO (O36015) Putative ribosomal RNA methyltransferase C4F10.03c (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) Length = 285 Score = 31.6 bits (70), Expect = 1.0 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +3 Query: 234 PKFFTPSTVRPLYIVTPTNASHVQAAVLCGRRSG 335 P F P +PL ++ PTNA + + CG G Sbjct: 210 PSNFQPDLTKPLCVIDPTNAHEIAPFIACGDLDG 243
>ESR1_ORYLA (P50241) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 620 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/78 (26%), Positives = 34/78 (43%) Frame = +3 Query: 96 YASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLYI 275 Y++ + + G S+ L L + LVF PSSP +P + + + +T P+Y Sbjct: 88 YSAPLETNGPPSEGSLQSLGSGPTSPLVFVPSSPRLSPFMHPPSHH---YLETTSTPVYR 144 Query: 276 VTPTNASHVQAAVLCGRR 329 + AS CG R Sbjct: 145 SSHQGASREDQ---CGSR 159
>VIT2_FUNHE (Q98893) Vitellogenin-2 precursor (Vitellogenin II) (VTG II)| [Contains: Lipovitellin-1 (LV1); Phosvitin (PV); Lipovitellin-2 (LV2)] Length = 1687 Score = 29.6 bits (65), Expect = 3.8 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 11/101 (10%) Frame = +3 Query: 153 SASIPRQLVFTPSSPS-FTP--LLKSSIRNPKFFTPSTVRPLYIVTPTNASHVQAAVL-- 317 +AS+ Q +P P F P LLKS I TPS Y V N+ +QA+VL Sbjct: 812 AASVEVQATISPPLPEDFHPAHLLKSDISMKASVTPSVSLHTYGVMGVNSPFIQASVLSR 871 Query: 318 ------CGRRSGLRIXVRSGGHDYXGLSYRSVRAEAFAVLD 422 ++ R+ + G Y L V+ A A L+ Sbjct: 872 AKDHAALPKKMEARLDIVKGYFSYQFLPVEGVKTIASARLE 912
>PMPI_CHLTR (O84882) Probable outer membrane protein pmpI precursor| (Polymorphic membrane protein I) Length = 878 Score = 29.3 bits (64), Expect = 5.0 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Frame = +3 Query: 132 DAFLSCLSASIPRQLVFTP----SSPSFTPL---LKSSIRNPKFFTPSTVRPLYIVTPTN 290 DA LS L A L F P SS +PL L++S+ +P TP+T PL I T N Sbjct: 336 DAILSSLEARNGDILFFDPIVQESSSKESPLPSSLQASVTSP---TPATASPLVIQTSAN 392 Query: 291 AS 296 S Sbjct: 393 RS 394
>E321_ADE1A (P35769) Early E3 20.2 kDa glycoprotein| Length = 183 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +3 Query: 183 TPSSPSFTPLLKSSIRNPKFFTPSTVRPLYIVT 281 T S+P+FT LLK ++ N + ST+ + +VT Sbjct: 119 TISNPTFTALLKRTVNNSTTISTSTISIIAVVT 151
>NDC1_PONPY (Q5RBY5) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 674 Score = 28.9 bits (63), Expect = 6.6 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Frame = +3 Query: 96 YASSVASQGNSSDAF-LSCLSASIPRQLVF-TPSS-----PSFTPLLKSSIRNPKFFTPS 254 Y + A+ G S ++ + + P + F TP S PS PL+K+S+ + K TP Sbjct: 383 YQEAAATNGRVSSSYPVEPKKLNSPEETTFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPE 442 Query: 255 TVRP 266 V P Sbjct: 443 VVSP 446
>NDC1_HUMAN (Q9BTX1) Nucleoporin NDC1 (hNDC1) (Transmembrane protein 48)| Length = 674 Score = 28.9 bits (63), Expect = 6.6 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Frame = +3 Query: 96 YASSVASQGNSSDAF-LSCLSASIPRQLVF-TPSS-----PSFTPLLKSSIRNPKFFTPS 254 Y + A+ G S ++ + + P + F TP S PS PL+K+S+ + K TP Sbjct: 383 YQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPD 442 Query: 255 TVRP 266 V P Sbjct: 443 VVSP 446
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 28.5 bits (62), Expect = 8.6 Identities = 29/114 (25%), Positives = 42/114 (36%) Frame = +3 Query: 99 ASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLYIV 278 AS +S SS A S L++S SS + + L SSI + + ST Sbjct: 102 ASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLAS 161 Query: 279 TPTNASHVQAAVLCGRRSGLRIXVRSGGHDYXGLSYRSVRAEAFAVLDLSSLRS 440 + TN++ S L S L+ S+ + A SSL S Sbjct: 162 SSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSS 215 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,080,739 Number of Sequences: 219361 Number of extensions: 574654 Number of successful extensions: 2067 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1799 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1983 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
