| Clone Name | bart07e10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M60599.1|WHTDHDPD26 T.aestivum dihydrodipicolinate synthase (DHDPS) mRNA, complete cds, clones pDA08-26 Length = 1361 Score = 327 bits (165), Expect = 1e-86 Identities = 204/217 (94%) Strand = Plus / Plus Query: 161 gtcacacagggttagtagaggaaagttttcagctgcagccatcaccactgatgactatct 220 ||||||||||||| | |||||||||||||||||||| |||||||| |||||||| ||||| Sbjct: 168 gtcacacagggttggcagaggaaagttttcagctgcggccatcactactgatgattatct 227 Query: 221 tccgatgcgaagtactgaagtgaaaaatcggacgtctgtagatggaatcaaaagtctcag 280 ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 228 tccaatgcgaagtactgaagtgaaaaatcggacatcagtagatggaatcaaaagtctcag 287 Query: 281 actaatcacagctatcaaaaccccctatttgccagacggaagatttgatcttgaagcata 340 |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 288 actaatcacagcggtcaaaaccccctatttgccagatggaagatttgatcttgaagcata 347 Query: 341 tgattctctgataaacacgcaaataaacggtggcgcc 377 ||||||| |||||||||||||||||||||| |||||| Sbjct: 348 tgattctttgataaacacgcaaataaacgggggcgcc 384 Score = 107 bits (54), Expect = 3e-20 Identities = 88/97 (90%), Gaps = 3/97 (3%) Strand = Plus / Plus Query: 1 aaaaccctcgtctggttcgctggttttcact-gagtgacgaaacaatgatggcggcgcag 59 |||||||||| |||||||||||||||||||| || |||| |||||||||||||||||| Sbjct: 9 aaaaccctcgcctggttcgctggttttcactcgaaggacg--acaatgatggcggcgcag 66 Query: 60 ccgacgggtagcccgggggcccgcctcggctggaagg 96 ||||||| || |||||||| ||||||||||||||||| Sbjct: 67 ccgacggctaacccgggggtccgcctcggctggaagg 103
>gb|M60598.1|WHTDHDPD17 T.aestivum dihydrodipicolinate synthase (DHDPS) mRNA, complete cds, clone pDA17 Length = 1458 Score = 246 bits (124), Expect = 4e-62 Identities = 181/200 (90%) Strand = Plus / Plus Query: 168 agggttagtagaggaaagttttcagctgcagccatcaccactgatgactatcttccgatg 227 |||||||||| |||||||||| ||| ||||||| |||| ||||| |||||||||||| Sbjct: 244 agggttagtaaaggaaagtttgcagttgcagccgtcactctagatgattatcttccgatg 303 Query: 228 cgaagtactgaagtgaaaaatcggacgtctgtagatggaatcaaaagtctcagactaatc 287 |||||||||||||||||||| ||||| || ||||||||||||||| |||||||||||| Sbjct: 304 cgaagtactgaagtgaaaaaccggacatcaacagatggaatcaaaagcctcagactaatc 363 Query: 288 acagctatcaaaaccccctatttgccagacggaagatttgatcttgaagcatatgattct 347 ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 364 acagcggtcaaaaccccctatttgccagatggaagatttgatcttgaagcatacgattct 423 Query: 348 ctgataaacacgcaaataaa 367 |||||||||||||||||||| Sbjct: 424 ctgataaacacgcaaataaa 443
>dbj|AK071042.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080C02, full insert sequence Length = 1626 Score = 139 bits (70), Expect = 7e-30 Identities = 162/190 (85%), Gaps = 2/190 (1%) Strand = Plus / Plus Query: 167 cagggttagtagaggaaagttttcagctgca-gccatcaccactgatgactatcttccga 225 |||| |||| |||||||||||| || |||| ||||||||| |||||| |||||||| | Sbjct: 299 caggattagcagaggaaagtttgca-ttgcaggccatcacccttgatgattatcttccaa 357 Query: 226 tgcgaagtactgaagtgaaaaatcggacgtctgtagatggaatcaaaagtctcagactaa 285 |||||||||||||||||||||||||||| || || || |||| ||||||||| ||| Sbjct: 358 tgcgaagtactgaagtgaaaaatcggacatcaacagctgatatcactagtctcagagtaa 417 Query: 286 tcacagctatcaaaaccccctatttgccagacggaagatttgatcttgaagcatatgatt 345 | ||||| |||||||||| ||| |||| || |||||||||||||||||||||||||||| Sbjct: 418 ttacagcggtcaaaaccccatatctgcctgatggaagatttgatcttgaagcatatgatt 477 Query: 346 ctctgataaa 355 | |||||||| Sbjct: 478 cactgataaa 487
>gb|DQ447323.1| Zizania latifolia dihydrodipicolinate synthase (DHDPS) mRNA, complete cds Length = 1177 Score = 109 bits (55), Expect = 7e-21 Identities = 112/131 (85%) Strand = Plus / Plus Query: 225 atgcgaagtactgaagtgaaaaatcggacgtctgtagatggaatcaaaagtctcagacta 284 ||||||||| ||||||||||||||||||| || || || |||| || |||||| || Sbjct: 1 atgcgaagttctgaagtgaaaaatcggacatcaacagctgatatcactagcctcagatta 60 Query: 285 atcacagctatcaaaaccccctatttgccagacggaagatttgatcttgaagcatatgat 344 || ||||| |||||||||| ||| ||||||| ||||||||||||||||||||||||||| Sbjct: 61 ataacagcagtcaaaaccccttatctgccagatggaagatttgatcttgaagcatatgat 120 Query: 345 tctctgataaa 355 || |||||||| Sbjct: 121 tcactgataaa 131
>gb|U61730.2|CLU61730 Coix lacryma-jobi dihydrodipicolinate synthase (dapA) gene, complete cds Length = 4214 Score = 109 bits (55), Expect = 7e-21 Identities = 82/91 (90%) Strand = Plus / Plus Query: 267 atcaaaagtctcagactaatcacagctatcaaaaccccctatttgccagacggaagattt 326 |||| |||||| ||| ||||||||||| ||||||||||||||||||| || |||||||| Sbjct: 3123 atcacaagtctgagattaatcacagctgtcaaaaccccctatttgcctgatggaagattc 3182 Query: 327 gatcttgaagcatatgattctctgataaaca 357 ||||| ||||||||||||||||| ||||||| Sbjct: 3183 gatctggaagcatatgattctctcataaaca 3213 Score = 54.0 bits (27), Expect = 3e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 210 gatgactatcttccgatgcgaagtactgaagtgaa 244 ||||| |||||||| |||||||||||||||||||| Sbjct: 2207 gatgattatcttccaatgcgaagtactgaagtgaa 2241
>gb|BT016780.1| Zea mays clone Contig613 mRNA sequence Length = 1334 Score = 103 bits (52), Expect = 4e-19 Identities = 124/148 (83%) Strand = Plus / Plus Query: 210 gatgactatcttccgatgcgaagtactgaagtgaaaaatcggacgtctgtagatggaatc 269 ||||| || ||||| |||||||| ||||||||||| || ||||| || ||||| ||| Sbjct: 186 gatgattaccttccaatgcgaagcactgaagtgaagaaccggacatcaacagatgacatc 245 Query: 270 aaaagtctcagactaatcacagctatcaaaaccccctatttgccagacggaagatttgat 329 | ||| || |||||||||||||| | |||||||||||||||||||| || || || ||| Sbjct: 246 acaaggctgagactaatcacagcagttaaaaccccctatttgccagatgggaggttcgat 305 Query: 330 cttgaagcatatgattctctgataaaca 357 || ||||||||||||||||| ||||||| Sbjct: 306 ctggaagcatatgattctctcataaaca 333
>emb|X52850.1|ZMDHPS Maize mRNA for dihydrodipicolinate synthase (EC 4.2.1.52) Length = 1400 Score = 103 bits (52), Expect = 4e-19 Identities = 124/148 (83%) Strand = Plus / Plus Query: 210 gatgactatcttccgatgcgaagtactgaagtgaaaaatcggacgtctgtagatggaatc 269 ||||| || ||||| |||||||| ||||||||||| || ||||| || ||||| ||| Sbjct: 214 gatgattaccttccaatgcgaagcactgaagtgaagaaccggacatcaacagatgacatc 273 Query: 270 aaaagtctcagactaatcacagctatcaaaaccccctatttgccagacggaagatttgat 329 | ||| || |||||||||||||| | |||||||||||||||||||| || || || ||| Sbjct: 274 acaaggctgagactaatcacagcagttaaaaccccctatttgccagatgggaggttcgat 333 Query: 330 cttgaagcatatgattctctgataaaca 357 || ||||||||||||||||| ||||||| Sbjct: 334 ctggaagcatatgattctctcataaaca 361
>gb|AY107228.1| Zea mays PCO090048 mRNA sequence Length = 1425 Score = 103 bits (52), Expect = 4e-19 Identities = 124/148 (83%) Strand = Plus / Plus Query: 210 gatgactatcttccgatgcgaagtactgaagtgaaaaatcggacgtctgtagatggaatc 269 ||||| || ||||| |||||||| ||||||||||| || ||||| || ||||| ||| Sbjct: 267 gatgattaccttccaatgcgaagcactgaagtgaagaaccggacatcaacagatgacatc 326 Query: 270 aaaagtctcagactaatcacagctatcaaaaccccctatttgccagacggaagatttgat 329 | ||| || |||||||||||||| | |||||||||||||||||||| || || || ||| Sbjct: 327 acaaggctgagactaatcacagcagttaaaaccccctatttgccagatgggaggttcgat 386 Query: 330 cttgaagcatatgattctctgataaaca 357 || ||||||||||||||||| ||||||| Sbjct: 387 ctggaagcatatgattctctcataaaca 414
>ref|XM_471331.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1062 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 273 agtctcagactaatcacagctatcaaaaccccctatttgccagacggaagatttgatctt 332 ||||||||| |||| ||||| |||||||||| ||| |||| || ||||||||||||||| Sbjct: 157 agtctcagagtaattacagcggtcaaaaccccatatctgcctgatggaagatttgatctt 216 Query: 333 gaagcatatgattctctgataaa 355 |||||||||||||| |||||||| Sbjct: 217 gaagcatatgattcactgataaa 239
>emb|AL607007.3|OSJN00118 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018J12, complete sequence Length = 120004 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 273 agtctcagactaatcacagctatcaaaaccccctatttgccagacggaagatttgatctt 332 ||||||||| |||| ||||| |||||||||| ||| |||| || ||||||||||||||| Sbjct: 96944 agtctcagagtaattacagcggtcaaaaccccatatctgcctgatggaagatttgatctt 97003 Query: 333 gaagcatatgattctctgataaa 355 |||||||||||||| |||||||| Sbjct: 97004 gaagcatatgattcactgataaa 97026 Score = 77.8 bits (39), Expect = 2e-11 Identities = 77/87 (88%), Gaps = 2/87 (2%) Strand = Plus / Plus Query: 166 acagggttagtagaggaaagttttcagctgcag-ccatcaccactgatgactatcttccg 224 ||||| |||| |||||||||||| || ||||| |||||||| |||||| |||||||| Sbjct: 96232 acaggattagcagaggaaagtttgcat-tgcaggccatcacccttgatgattatcttcca 96290 Query: 225 atgcgaagtactgaagtgaaaaatcgg 251 ||||||||||||||||||||||||||| Sbjct: 96291 atgcgaagtactgaagtgaaaaatcgg 96317
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 273 agtctcagactaatcacagctatcaaaaccccctatttgccagacggaagatttgatctt 332 ||||||||| |||| ||||| |||||||||| ||| |||| || ||||||||||||||| Sbjct: 10116460 agtctcagagtaattacagcggtcaaaaccccatatctgcctgatggaagatttgatctt 10116519 Query: 333 gaagcatatgattctctgataaa 355 |||||||||||||| |||||||| Sbjct: 10116520 gaagcatatgattcactgataaa 10116542 Score = 83.8 bits (42), Expect = 4e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 276 ctcagactaatcacagctatcaaaaccccctatttgccagacggaagatttgatcttgaa 335 |||||| |||| ||||| | |||||||| ||| |||| || |||||||||||||||||| Sbjct: 28906142 ctcagagtaataacagcggttaaaaccccttatctgccggatggaagatttgatcttgaa 28906083 Query: 336 gcatatgattctctgataaaca 357 ||||||||||| |||||||||| Sbjct: 28906082 gcatatgattcgctgataaaca 28906061 Score = 77.8 bits (39), Expect = 2e-11 Identities = 77/87 (88%), Gaps = 2/87 (2%) Strand = Plus / Plus Query: 166 acagggttagtagaggaaagttttcagctgcag-ccatcaccactgatgactatcttccg 224 ||||| |||| |||||||||||| || ||||| |||||||| |||||| |||||||| Sbjct: 10115748 acaggattagcagaggaaagtttgcat-tgcaggccatcacccttgatgattatcttcca 10115806 Query: 225 atgcgaagtactgaagtgaaaaatcgg 251 ||||||||||||||||||||||||||| Sbjct: 10115807 atgcgaagtactgaagtgaaaaatcgg 10115833 Score = 67.9 bits (34), Expect = 2e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 166 acagggttagtagaggaaagttttcagctgcagccatcaccactgatgactatcttccga 225 ||||| |||| |||||||||||||||| | |||||| || ||||| |||||||| | Sbjct: 28906841 acaggattagcagaggaaagttttcagtgacggccatctccctggatgattatcttccaa 28906782 Query: 226 tgcgaagtactgaagtgaaaaatcgg 251 ||||||||| |||||||||||||||| Sbjct: 28906781 tgcgaagtagtgaagtgaaaaatcgg 28906756 Score = 52.0 bits (26), Expect = 0.001 Identities = 68/82 (82%) Strand = Plus / Minus Query: 166 acagggttagtagaggaaagttttcagctgcagccatcaccactgatgactatcttccga 225 ||||| |||| | |||||||||||||| | |||||| || ||||| |||||||| | Sbjct: 28910989 acaggattagcataggaaagttttcagtgacggccatctccctggatgattatcttccaa 28910930 Query: 226 tgcgaagtactgaagtgaaaaa 247 ||||||||| |||||||||||| Sbjct: 28910929 tgcgaagtagtgaagtgaaaaa 28910908
>gb|L77616.1| Oryza sativa dihydrodipicolinate synthase gene, complete cds Length = 3116 Score = 83.8 bits (42), Expect = 4e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 276 ctcagactaatcacagctatcaaaaccccctatttgccagacggaagatttgatcttgaa 335 |||||| |||| ||||| | |||||||| ||| |||| || |||||||||||||||||| Sbjct: 1935 ctcagagtaataacagcggttaaaaccccttatctgccggatggaagatttgatcttgaa 1994 Query: 336 gcatatgattctctgataaaca 357 ||||||||||| |||||||||| Sbjct: 1995 gcatatgattcgctgataaaca 2016 Score = 67.9 bits (34), Expect = 2e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 166 acagggttagtagaggaaagttttcagctgcagccatcaccactgatgactatcttccga 225 ||||| |||| |||||||||||||||| | |||||| || ||||| |||||||| | Sbjct: 1238 acaggattagcagaggaaagttttcagtgacggccatctccctggatgattatcttccaa 1297 Query: 226 tgcgaagtactgaagtgaaaaatcgg 251 ||||||||| |||||||||||||||| Sbjct: 1298 tgcgaagtagtgaagtgaaaaatcgg 1323
>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence Length = 154865 Score = 83.8 bits (42), Expect = 4e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 276 ctcagactaatcacagctatcaaaaccccctatttgccagacggaagatttgatcttgaa 335 |||||| |||| ||||| | |||||||| ||| |||| || |||||||||||||||||| Sbjct: 118304 ctcagagtaataacagcggttaaaaccccttatctgccggatggaagatttgatcttgaa 118245 Query: 336 gcatatgattctctgataaaca 357 ||||||||||| |||||||||| Sbjct: 118244 gcatatgattcgctgataaaca 118223 Score = 67.9 bits (34), Expect = 2e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 166 acagggttagtagaggaaagttttcagctgcagccatcaccactgatgactatcttccga 225 ||||| |||| |||||||||||||||| | |||||| || ||||| |||||||| | Sbjct: 119003 acaggattagcagaggaaagttttcagtgacggccatctccctggatgattatcttccaa 118944 Query: 226 tgcgaagtactgaagtgaaaaatcgg 251 ||||||||| |||||||||||||||| Sbjct: 118943 tgcgaagtagtgaagtgaaaaatcgg 118918 Score = 52.0 bits (26), Expect = 0.001 Identities = 68/82 (82%) Strand = Plus / Minus Query: 166 acagggttagtagaggaaagttttcagctgcagccatcaccactgatgactatcttccga 225 ||||| |||| | |||||||||||||| | |||||| || ||||| |||||||| | Sbjct: 123151 acaggattagcataggaaagttttcagtgacggccatctccctggatgattatcttccaa 123092 Query: 226 tgcgaagtactgaagtgaaaaa 247 ||||||||| |||||||||||| Sbjct: 123091 tgcgaagtagtgaagtgaaaaa 123070
>emb|X72743.2|PDPTDHDS P.deltoides/trichocarpa mRNA for dihydrodipicolinate synthase Length = 1177 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 288 acagctatcaaaaccccctatttgccagacggaagatttgatcttgaagcatatgat 344 ||||| ||||||||||| ||| |||| || || ||||||||||||||||| |||||| Sbjct: 251 acagccatcaaaaccccatatctgcctgatggtagatttgatcttgaagcgtatgat 307
>gb|BT014092.1| Lycopersicon esculentum clone 133196F, mRNA sequence Length = 1368 Score = 46.1 bits (23), Expect = 0.081 Identities = 44/51 (86%) Strand = Plus / Plus Query: 294 atcaaaaccccctatttgccagacggaagatttgatcttgaagcatatgat 344 ||||||||||| ||| | ||||| |||||||| ||||| || ||||||||| Sbjct: 286 atcaaaaccccatatctaccagatggaagattcgatctcgaggcatatgat 336
>ref|NM_130106.2| Arabidopsis thaliana DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE); dihydrodipicolinate synthase AT2G45440 (DHDPS2) mRNA, complete cds Length = 1700 Score = 42.1 bits (21), Expect = 1.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 285 atcacagctatcaaaaccccctatttgccagacggaagatttgatcttgaagc 337 ||||||||||||||||| || ||| | || || |||||||| || |||||||| Sbjct: 659 atcacagctatcaaaacaccgtatctacctgatggaagattcgaccttgaagc 711
>gb|AC002387.3| Arabidopsis thaliana chromosome 2 clone F4L23 map CIC02E07, complete sequence Length = 122928 Score = 42.1 bits (21), Expect = 1.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 285 atcacagctatcaaaaccccctatttgccagacggaagatttgatcttgaagc 337 ||||||||||||||||| || ||| | || || |||||||| || |||||||| Sbjct: 15964 atcacagctatcaaaacaccgtatctacctgatggaagattcgaccttgaagc 15912
>gb|AF200325.1|AF200325 Arabidopsis thaliana dihydrodipicolinate synthase 2 (DHDPS2) gene, complete cds Length = 1815 Score = 42.1 bits (21), Expect = 1.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 285 atcacagctatcaaaaccccctatttgccagacggaagatttgatcttgaagc 337 ||||||||||||||||| || ||| | || || |||||||| || |||||||| Sbjct: 883 atcacagctatcaaaacaccgtatctacctgatggaagattcgaccttgaagc 935
>gb|BT004823.1| Arabidopsis thaliana At2g45440 gene, complete cds Length = 1098 Score = 42.1 bits (21), Expect = 1.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 285 atcacagctatcaaaaccccctatttgccagacggaagatttgatcttgaagc 337 ||||||||||||||||| || ||| | || || |||||||| || |||||||| Sbjct: 205 atcacagctatcaaaacaccgtatctacctgatggaagattcgaccttgaagc 257
>gb|AY089070.1| Arabidopsis thaliana clone 26817 mRNA, complete sequence Length = 1477 Score = 42.1 bits (21), Expect = 1.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 285 atcacagctatcaaaaccccctatttgccagacggaagatttgatcttgaagc 337 ||||||||||||||||| || ||| | || || |||||||| || |||||||| Sbjct: 465 atcacagctatcaaaacaccgtatctacctgatggaagattcgaccttgaagc 517
>gb|L36436.1|SOYDAPA Glycine max dihydrodipicolinate synthase (dapA) mRNA, complete cds Length = 999 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 324 tttgatcttgaagcatatgat 344 ||||||||||||||||||||| Sbjct: 145 tttgatcttgaagcatatgat 165
>emb|AL360270.18| Human DNA sequence from clone RP11-96K19 on chromosome 1 Contains a putative novel transcript, a gene for a novel protein (FLJ11269), a processed pseudogene for cyclin T2 (CCNT2) and a CpG island, complete sequence Length = 172805 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 atttgatcttgaagcatatg 342 |||||||||||||||||||| Sbjct: 73453 atttgatcttgaagcatatg 73472
>emb|X98506.1|STACS S.tuberosum mRNA for acetyl-CoA synthetase Length = 2383 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gctgcagccatcaccactga 211 |||||||||||||||||||| Sbjct: 1731 gctgcagccatcaccactga 1712
>gb|AC154473.2| Mus musculus BAC clone RP24-120O11 from chromosome 16, complete sequence Length = 190965 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 aatcaaaagtctcagactaatcac 289 |||||||||||||||||| ||||| Sbjct: 157007 aatcaaaagtctcagactgatcac 157030 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,411,109 Number of Sequences: 3902068 Number of extensions: 2411109 Number of successful extensions: 38714 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38643 Number of HSP's gapped (non-prelim): 66 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)