ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06h08 |
|---|---|
| Clone Library Name | barley_pub |
>TSJT1_TOBAC (P24805) Stem-specific protein TSJT1| Length = 149 Score = 42.7 bits (99), Expect = 2e-04 Identities = 23/67 (34%), Positives = 34/67 (50%) Frame = +3 Query: 153 GSRTPSPKTRASELVKRFLAGADPAVSVELGSLGNLAYSHVKESLLLPRSFAAXDEIFCL 332 G + KTR E+ + F + L + +A+SH E+ L PRS D++FC+ Sbjct: 22 GIQKKEAKTR-EEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCI 80 Query: 333 FEGVLDN 353 F G LDN Sbjct: 81 FSGALDN 87
>ACS2_ZYGBA (Q96VC7) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA| ligase 2) (Acyl-activating enzyme 2) Length = 675 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/52 (34%), Positives = 27/52 (51%) Frame = +3 Query: 171 PKTRASELVKRFLAGADPAVSVELGSLGNLAYSHVKESLLLPRSFAAXDEIF 326 PKTR+ ++++R L + +LG L +A S V +P AA DE F Sbjct: 623 PKTRSGKIMRRVLRKVASNEADQLGDLSTMANSEV-----VPSIIAAVDEQF 669
>Y4FC_RHISN (P55441) Hypothetical monooxygenase y4fC (EC 1.-.-.-)| Length = 244 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -2 Query: 337 SNRQKISSXAAKDLGRRRDSLTWE*ARLPSDPSSTDTAGSAPARKRFTSSDAR 179 S+ K S+ ++K++G+R S +T +AGS+P R RFT S R Sbjct: 162 SDISKCSTSSSKEVGKRGRSF------------ATRSAGSSPTRPRFTRSVTR 202
>K1949_MOUSE (Q8BQ30) Protein KIAA1949 homolog| Length = 594 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -2 Query: 253 PSDPSSTDTAGSAPARKRF-TSSDARVLGDGVRL 155 P +P++ D AGS +KR+ T+ + VLG +RL Sbjct: 468 PVNPATADAAGSGSGKKRYPTAEEILVLGGYLRL 501
>FADB_PSEPK (Q88L02) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 715 Score = 28.1 bits (61), Expect = 5.4 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 8/65 (12%) Frame = +3 Query: 153 GSRTPSPKTRASELVKRFLAGADPAVSVELGSLGNLAYSHVKESLL--------LPRSFA 308 G P+P + K G D A+ VE LA + V ESL+ L R Sbjct: 246 GPNYPAPVEAIKSIQKAANFGRDKALEVEAAGFAKLAKTSVAESLIGLFLNDQELKRKAK 305 Query: 309 AXDEI 323 A DEI Sbjct: 306 AHDEI 310
>KSGA_RHOPA (Q6N5B4) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 287 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = -2 Query: 358 PKLSRTPSNRQKISSXAAKDLGRRRDSLTWE*ARLPSDPSS-TDTAGSAPARKRFT 194 P+ P +R + AA G+RR L L DP+ T AG PAR+ T Sbjct: 209 PRAQPEPCDRAALEQVAAAAFGQRRKMLRQSLKSLGVDPAQLTAAAGIDPARRAET 264
>FADB_PSEPU (Q9AHY3) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 715 Score = 27.7 bits (60), Expect = 7.1 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 8/65 (12%) Frame = +3 Query: 153 GSRTPSPKTRASELVKRFLAGADPAVSVELGSLGNLAYSHVKESLL--------LPRSFA 308 G P+P + K G D A+ VE LA + V ESL+ L R Sbjct: 246 GPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSVAESLIGLFLNDQELKRKAK 305 Query: 309 AXDEI 323 A DEI Sbjct: 306 AHDEI 310
>FADB_PSEOL (Q93Q12) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 715 Score = 27.7 bits (60), Expect = 7.1 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 8/65 (12%) Frame = +3 Query: 153 GSRTPSPKTRASELVKRFLAGADPAVSVELGSLGNLAYSHVKESLL--------LPRSFA 308 G P+P + K G D A+ VE LA + V ESL+ L R Sbjct: 246 GPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSVAESLIGLFLNDQELKRKAK 305 Query: 309 AXDEI 323 A DEI Sbjct: 306 AHDEI 310
>NIRL_PSEST (Q52523) Protein nirL| Length = 170 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -1 Query: 374 LLAQPPQVVQDSLEQAEDLILCSERPWEEEGLF 276 L A+P Q + + + E+ +L + W+EEGLF Sbjct: 23 LAARPYQRLAEQIGSVEEHVLQQIQRWQEEGLF 55
>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 1004 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +3 Query: 156 SRTPSPKTRASELVKRFLAGADPAVSVELGSLG 254 SRTPSP++ A VK L+ P S G LG Sbjct: 485 SRTPSPRSPAPARVKAELSSPTPGSSPVPGELG 517
>PYR1_YEAST (P07259) Protein URA1 [Includes: Glutamine-dependent| carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2)] Length = 2214 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Frame = +3 Query: 207 LAGADPAVSVELGSLGNLA-YSHVK 278 LAGADP + VE+ S G +A + H K Sbjct: 1319 LAGADPVLGVEMASTGEVATFGHSK 1343 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,962,160 Number of Sequences: 219361 Number of extensions: 537406 Number of successful extensions: 1901 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1898 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
