ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart06f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OAT4_HUMAN (Q9NSA0) Solute carrier family 22 member 11 (Organic ... 40 0.003
2S22A4_MOUSE (Q9Z306) Organic cation/carnitine transporter 1 (Sol... 40 0.004
3S22A9_HUMAN (Q8IVM8) Solute carrier family 22 member 9 (Organic ... 39 0.007
4S22A5_MOUSE (Q9Z0E8) Organic cation/carnitine transporter 2 (Sol... 39 0.012
5S22A4_RAT (Q9R141) Organic cation/carnitine transporter 1 (Solut... 38 0.015
6OAT6_MOUSE (Q80UJ1) Solute carrier family 22 member 20 (Organic ... 38 0.020
7S22A4_HUMAN (Q9H015) Organic cation/carnitine transporter 1 (Sol... 37 0.034
8S22A5_HUMAN (O76082) Organic cation/carnitine transporter 2 (Sol... 37 0.034
9OCTN3_MOUSE (Q9WTN6) Organic cation/carnitine transporter 3 (Sol... 37 0.034
10S22A5_RAT (O70594) Organic cation/carnitine transporter 2 (Solut... 37 0.044
11RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1... 33 0.49
12SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory eleme... 32 0.83
13ARGC_SULAC (Q4JAQ3) N-acetyl-gamma-glutamyl-phosphate/N-acetyl-g... 32 1.4
14STF_LAMBD (P03764) Side tail fiber protein 31 1.9
15CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 prec... 31 1.9
16K0574_HUMAN (O60320) Protein KIAA0574 (Fragment) 30 3.2
17ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (I... 30 3.2
18OAT5_HUMAN (Q63ZE4) Solute carrier family 22 member 10 (Organic ... 30 4.1
19SI1L3_HUMAN (O60292) Signal-induced proliferation-associated 1-l... 30 4.1
20MOVP_ACLSA (P54892) Putative movement protein (50.4 kDa protein)... 30 5.4
21FACD2_MOUSE (Q80V62) Fanconi anemia group D2 protein homolog (Pr... 29 7.1
22CCD37_HUMAN (Q494V2) Coiled-coil domain-containing protein 37 29 7.1
23CN004_HUMAN (Q9H1B7) Protein C14orf4 29 7.1
24CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog 29 7.1
25INO80_CANAL (Q59KI4) Putative DNA helicase INO80 (EC 3.6.1.-) 29 9.2
26POLN_SLDV (Q8QL53) Nonstructural polyprotein (Polyprotein nsP123... 29 9.2
27STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoi... 29 9.2

>OAT4_HUMAN (Q9NSA0) Solute carrier family 22 member 11 (Organic anion|
           transporter 4)
          Length = 550

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 EPRWHCTGXXXXXXXXXXXXXXXXXGAWAWDRPAVTS-VISEWSLKCAGPALVSLPASSF 432
           +P+W                       W +DR   TS ++++W L C+   L  L  S F
Sbjct: 90  QPQWQLLDPNATATSWSEADTEPCVDGWVYDRSVFTSTIVAKWDLVCSSQGLKPLSQSIF 149

Query: 433 FAGCLAGGFLLTTLADSLLGRRKML 507
            +G L G F+   L+    GR+ ML
Sbjct: 150 MSGILVGSFIWGLLS-YRFGRKPML 173



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>S22A4_MOUSE (Q9Z306) Organic cation/carnitine transporter 1 (Solute carrier|
           family 22 member 4)
          Length = 553

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +1

Query: 337 WAWDRPA-VTSVISEWSLKCAGPALVSLPASSFFAGCLAGGFLLTTLADSLLGRRKMLLV 513
           W +D+   ++++++EW+L C       L  S FF G L G F+   L+D   GR+K+L  
Sbjct: 117 WEYDKDIFLSTIVTEWNLVCEDDWKTPLTTSLFFVGVLCGSFVSGQLSDR-FGRKKVLFA 175

Query: 514 SI 519
           ++
Sbjct: 176 TM 177



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>S22A9_HUMAN (Q8IVM8) Solute carrier family 22 member 9 (Organic anion|
           transporter 4)
          Length = 553

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 337 WAWDRPAVTS-VISEWSLKCAGPALVSLPASSFFAGCLAGGFLLTTLADSLLGRRKML 507
           W +DR + +S +++EW L C   +L S+    F AG + GG L   L+D   GRR +L
Sbjct: 120 WVYDRISFSSTIVTEWDLVCDSQSLTSVAKFVFMAGMMVGGILGGHLSDR-FGRRFVL 176



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>S22A5_MOUSE (Q9Z0E8) Organic cation/carnitine transporter 2 (Solute carrier|
           family 22 member 5) (High-affinity sodium-dependent
           carnitine cotransporter)
          Length = 557

 Score = 38.5 bits (88), Expect = 0.012
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +1

Query: 337 WAWDRPA-VTSVISEWSLKCAGPALVSLPASSFFAGCLAGGFLLTTLADSLLGRRKMLLV 513
           W +D+   ++++++EW L C       L  S FF G L G F+   L+D   GR+ +L +
Sbjct: 117 WEYDKDVFLSTIVTEWDLVCKDDWKAPLTTSLFFVGVLMGSFISGQLSDR-FGRKNVLFL 175

Query: 514 SI 519
           ++
Sbjct: 176 TM 177



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>S22A4_RAT (Q9R141) Organic cation/carnitine transporter 1 (Solute carrier|
           family 22 member 4)
          Length = 553

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +1

Query: 337 WAWDRPA-VTSVISEWSLKCAGPALVSLPASSFFAGCLAGGFLLTTLADSLLGRRKMLLV 513
           W + +   ++++++EW+L C       L  S FF G L G F+   L+D   GR+K+L  
Sbjct: 117 WEYSKDVFLSTIVTEWNLVCEDDWKTPLTTSLFFVGVLCGSFVSGQLSDR-FGRKKVLFA 175

Query: 514 SI 519
           ++
Sbjct: 176 TM 177



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>OAT6_MOUSE (Q80UJ1) Solute carrier family 22 member 20 (Organic anion|
           transporter 6)
          Length = 556

 Score = 37.7 bits (86), Expect = 0.020
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 337 WAWDRPAVTS-VISEWSLKCAGPALVSLPASSFFAGCLAGGFLLTTLADSLLGRRKMLLV 513
           W +DR    S ++ EW L C    L  L  S + +G L G  L   LAD  LGR+  L+ 
Sbjct: 111 WVYDRSIFPSTIVMEWDLVCEARTLRDLAQSIYMSGVLVGAALFGGLADR-LGRKAPLVW 169

Query: 514 SIVSM 528
           S + +
Sbjct: 170 SYLQL 174



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>S22A4_HUMAN (Q9H015) Organic cation/carnitine transporter 1 (Solute carrier|
           family 22 member 4) (Ergothioneine transporter) (ET
           transporter)
          Length = 551

 Score = 37.0 bits (84), Expect = 0.034
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +1

Query: 358 VTSVISEWSLKCAGPALVSLPASSFFAGCLAGGFLLTTLADSLLGRRKMLLVSI 519
           +++V++EW+L C     V L  S FF G L G F+   L+D   GR+ +L  ++
Sbjct: 125 LSTVVTEWNLVCEDNWKVPLTTSLFFVGVLLGSFVSGQLSDR-FGRKNVLFATM 177



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>S22A5_HUMAN (O76082) Organic cation/carnitine transporter 2 (Solute carrier|
           family 22 member 5) (High-affinity sodium-dependent
           carnitine cotransporter)
          Length = 557

 Score = 37.0 bits (84), Expect = 0.034
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +1

Query: 358 VTSVISEWSLKCAGPALVSLPASSFFAGCLAGGFLLTTLADSLLGRRKMLLVSI 519
           ++++++EW+L C       L  S FF G L G F+   L+D   GR+ +L V++
Sbjct: 125 LSTIVTEWNLVCEDDWKAPLTISLFFVGVLLGSFISGQLSDR-FGRKNVLFVTM 177



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>OCTN3_MOUSE (Q9WTN6) Organic cation/carnitine transporter 3 (Solute carrier|
           family 22 member 21) (Solute carrier family 22 member 9)
          Length = 564

 Score = 37.0 bits (84), Expect = 0.034
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +1

Query: 337 WAWDRPA-VTSVISEWSLKCAGPALVSLPASSFFAGCLAGGFLLTTLADSLLGRRKMLLV 513
           W +D+   ++++++EW L C       L  S F+ G L G F+   L+D   GR+ +L +
Sbjct: 117 WEYDKDIFLSTIVTEWDLVCKDDWKAPLTTSFFYVGVLLGSFISGQLSDR-FGRKNILFL 175

Query: 514 SI 519
           ++
Sbjct: 176 TM 177



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>S22A5_RAT (O70594) Organic cation/carnitine transporter 2 (Solute carrier|
           family 22 member 5) (High-affinity sodium-dependent
           carnitine cotransporter) (UST2r) (CT1)
          Length = 557

 Score = 36.6 bits (83), Expect = 0.044
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +1

Query: 337 WAWDRPA-VTSVISEWSLKCAGPALVSLPASSFFAGCLAGGFLLTTLADSLLGRRKMLLV 513
           W +++   ++++++EW L C       L  S FF G L G F+   L+D   GR+ +L +
Sbjct: 117 WEYNKDVFLSTIVTEWDLVCKDDWKAPLTTSLFFVGVLMGSFISGQLSDR-FGRKNVLFL 175

Query: 514 SI 519
           ++
Sbjct: 176 TM 177



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>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
            (Helicase-like protein NHL)
          Length = 1400

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = -1

Query: 494  RPRSESASVVRRKPPARQPAKNEDAGRETSAGPAHLSDHSEITDVTAGRSHAHAPDGSAH 315
            + +S+ +S +R++P     A  EDAG   S+GP H    SE               G  H
Sbjct: 1176 KTQSKISSFLRQRPAGTVGAGGEDAGPSQSSGPPHGPAASEW--------------GEPH 1221

Query: 314  GDAVAAEQDASAP 276
            G  +A +Q   AP
Sbjct: 1222 GRDIAGQQATGAP 1234



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>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding|
            protein) (NRE-binding protein) (DBP-5) (Bax antagonist
            selected in saccharomyces 1) (BASS1)
          Length = 2426

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 11   SPDKLAANAQKRAREPCEWLTRPPPRS*QATKQGRPRHRRSMTPSRR 151
            SP + +    +R+R P      P  RS   +++ R   RRS TPSRR
Sbjct: 1952 SPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRR 1998



 Score = 28.9 bits (63), Expect = 9.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 41   KRAREPCEWLTRPPPRS*QATKQGRPRHRRSMTPSRRT 154
            +R+R P      P  RS   +++ R   RRS TPSRR+
Sbjct: 1955 RRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRS 1992



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>ARGC_SULAC (Q4JAQ3) N-acetyl-gamma-glutamyl-phosphate/N-acetyl-gamma-|
           aminoadipyl-phosphate reductase (EC 1.2.1.38) (EC
           1.2.1.-) (AGPR) (N-acetyl-glutamate
           semialdehyde/N-acetyl-aminoadipate semialdehyde
           dehydrogenase) (NAGSA dehydrogenase)
          Length = 350

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
 Frame = -1

Query: 389 LSDHSEITDVTAGRSHAHAP--DGSAHGDAVAAEQDASAPVQC--HRGSASVNTEMNTCC 222
           L ++  I+DV  G S   A   +GS H +     Q+A  P +   HR +A V  E+    
Sbjct: 168 LDNYRLISDVKVGSSEGGAKPSEGSHHPE----RQNAIRPYEAEGHRHAAEVEQELQYI- 222

Query: 221 ASKAYAKASNTALRSCRAPVAPMYVSMVSSIDGALAGLVLWLVRSGAAAV----SAIRTV 54
            SK   K S             +    VS+I GALA +  WL+      +      I   
Sbjct: 223 -SKKEVKIS-------------LVPHAVSTIRGALASVHGWLISDDLNEIEFWKKIIEFY 268

Query: 53  RGRAFVRL 30
           RGR FVR+
Sbjct: 269 RGRKFVRV 276



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>STF_LAMBD (P03764) Side tail fiber protein|
          Length = 774

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 40/161 (24%), Positives = 58/161 (36%), Gaps = 6/161 (3%)
 Frame = -1

Query: 485 SESASVVRRKPPARQPAKNEDAGRETSAGPAHLSDHSEITDVTAGRSHAHAPDGS---AH 315
           SE+A+  R    +++ AK+ +    +SAG A  S        TA  + A A   S   A 
Sbjct: 230 SEAATSARDAVASKEAAKSSETNASSSAGRAASS-------ATAAENSARAAKTSETNAR 282

Query: 314 GDAVAAEQDASAPVQCH---RGSASVNTEMNTCCASKAYAKASNTALRSCRAPVAPMYVS 144
               AAE+ ASA         GSAS  +   T  A  A + + + +     A  A     
Sbjct: 283 SSETAAERSASAAADAKTAAAGSASTASTKATEAAGSAVSASQSKSAAEAAAIRAKNSAK 342

Query: 143 MVSSIDGALAGLVLWLVRSGAAAVSAIRTVRGRAFVRLPLA 21
               I  A+A       R G   +S+            P A
Sbjct: 343 RAEDIASAVALEDADTTRKGIVQLSSATNSTSETLAATPKA 383



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>CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 precursor (Inner|
           cell wall protein)
          Length = 238

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -1

Query: 431 NEDAGRETSAGPAHLSD-HSEITDVTAGRSHAHAPDGSAHGDAVAAEQDASAPVQCHRGS 255
           N DA    SA  +  S+ ++ + D ++  S + +    A     A+   AS+  +    S
Sbjct: 69  NNDADAAYSAFKSSCSEQNASLGDSSSSASSSASSSSKASSSTKASSSSASSSTKASSSS 128

Query: 254 ASVNTEMNTCCASKAYAKASNT 189
           AS +T+ ++  A+ + +KAS+T
Sbjct: 129 ASSSTKASSSSAAPSSSKASST 150



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>K0574_HUMAN (O60320) Protein KIAA0574 (Fragment)|
          Length = 405

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 28/100 (28%), Positives = 40/100 (40%)
 Frame = -1

Query: 455 PPARQPAKNEDAGRETSAGPAHLSDHSEITDVTAGRSHAHAPDGSAHGDAVAAEQDASAP 276
           PP R   ++   G +   GP H+S  +  +D T   S       S  GDA +        
Sbjct: 238 PPGRVSPEDPGMGSQVQPGPGHVSRST--SDPTLCTS-------SMAGDASS-------- 280

Query: 275 VQCHRGSASVNTEMNTCCASKAYAKASNTALRSCRAPVAP 156
              HR S S + E     A    A  S +A  +CRA ++P
Sbjct: 281 ---HRPSCSQDLEAGLSEAVPGSASMSRSATAACRAQLSP 317



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>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early|
           protein IE110) (VMW110) (Alpha-0 protein)
          Length = 775

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
 Frame = -1

Query: 494 RPRSESASVVRRKPPARQPAKNEDAGRETSAGPAHL----SDHSEIT-----DVTAGRSH 342
           RPR+  A  VR  PP   P +    G E +A PA        HS +      + +  R+ 
Sbjct: 400 RPRAAVAPCVRAPPPGPGP-RAPAPGAEPAARPADARRVPQSHSSLAQAANQEQSLCRAR 458

Query: 341 AHAPDGS-------AHGDAVAAEQDASAPVQCHRGSASVNTEMNTCCASKAYAKASNTAL 183
           A    GS        HG +  A    +AP+     +ASV  E       +  +   N + 
Sbjct: 459 ATVARGSGGPGVEGGHGPSRGAAPSGAAPLP---SAASVEQEAAVRPRKRRGSGQENPSP 515

Query: 182 RSCRAPVAP 156
           +S R P+AP
Sbjct: 516 QSTRPPLAP 524



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>OAT5_HUMAN (Q63ZE4) Solute carrier family 22 member 10 (Organic anion|
           transporter 5)
          Length = 531

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 20/83 (24%), Positives = 29/83 (34%)
 Frame = +1

Query: 259 PRWHCTGXXXXXXXXXXXXXXXXXGAWAWDRPAVTSVISEWSLKCAGPALVSLPASSFFA 438
           P+W                       W +D+    S I  W L C   +L S+       
Sbjct: 94  PQWQLLHLNGTIHSTSEADTEPCVDGWVYDQSYFPSTIVTWDLVCDYQSLKSVVQFLLLT 153

Query: 439 GCLAGGFLLTTLADSLLGRRKML 507
           G L GG +   ++D   GRR +L
Sbjct: 154 GMLVGGIIGGHVSDR-FGRRFIL 175



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>SI1L3_HUMAN (O60292) Signal-induced proliferation-associated 1-like protein 3|
            (SPA-1-like protein 3)
          Length = 1781

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 458  KPPARQPAKNEDAGRETSAGPAHLSDHSEITDVTAGRSHAHAPD 327
            K P+RQ A  +D+    S G    S HS    +++  S +H+ D
Sbjct: 1242 KHPSRQDAAGKDSPNRHSKGEPQYSSHSSSNTLSSNASSSHSDD 1285



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>MOVP_ACLSA (P54892) Putative movement protein (50.4 kDa protein) (ORF2)|
          Length = 457

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -1

Query: 488 RSESASVVRRKPPARQPAKNEDAGRETSAGPAHLSDHSEITDVTAGRSHAHAPDGSAHG 312
           RSES    RR+ P+ +   N  +G +T     HL +HS+  D+   R    A  G  HG
Sbjct: 366 RSESVPGRRRQTPSWKDRGN--SGTDTGG---HLREHSDTGDLGTNRVPGRAGGGEIHG 419



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>FACD2_MOUSE (Q80V62) Fanconi anemia group D2 protein homolog (Protein FACD2)|
          Length = 1450

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
 Frame = -1

Query: 530  DMDTMDTSSIFLRPRSESASVVRRKPPARQPAKNE--DAGRETSAGPAHLSDHSEITDVT 357
            D+DT+D     + PRS SA   + +   +   K +  D+ + + +      D SE     
Sbjct: 841  DLDTLD-----MMPRSSSAVAAKNRNKGKTGGKKQKADSNKASCSDTLLTEDTSECDMAP 895

Query: 356  AGRSHAHAPDGSAHGDAVAAEQDASA 279
            +GRSH         G    + Q+  A
Sbjct: 896  SGRSHVDKESTGKEGKTFVSLQNYRA 921



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>CCD37_HUMAN (Q494V2) Coiled-coil domain-containing protein 37|
          Length = 611

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 479 SASVVRRKPPARQPAKNEDAGRETSAGPAHLS 384
           S+S    + P +Q  KNE+ G + SA P HLS
Sbjct: 26  SSSSSTEENPKKQARKNEEHGPDPSANPFHLS 57



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>CN004_HUMAN (Q9H1B7) Protein C14orf4|
          Length = 796

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
 Frame = -1

Query: 455 PPARQPAKNEDAGRETSA--GPAHLSDHSEITDVTAGRSHAHAPDGSAHGDAVAAEQDAS 282
           PP   P  N     E++   GP+ ++    + D T G +H+     S H    +A +++S
Sbjct: 600 PPPLGPHSNRTTPPESAPQNGPSPMAALMSVAD-TLGTAHSPKDGSSVHSTTASARRNSS 658

Query: 281 APVQ-----CHRGSASVNTEMN 231
           +PV        R  AS N ++N
Sbjct: 659 SPVSPASVPGQRRLASRNGDLN 680



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>CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog|
          Length = 775

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
 Frame = -1

Query: 455 PPARQPAKNEDAGRETSA--GPAHLSDHSEITDVTAGRSHAHAPDGSAHGDAVAAEQDAS 282
           PP   P  N     E++   GP+ ++    + D T G +H+     S H    +A +++S
Sbjct: 579 PPPLGPHSNRTTPPESAPQNGPSPMAALMSVAD-TLGTAHSPKDGSSVHSTTASARRNSS 637

Query: 281 APVQ-----CHRGSASVNTEMN 231
           +PV        R  AS N ++N
Sbjct: 638 SPVSPASVPGQRRLASRNGDLN 659



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>INO80_CANAL (Q59KI4) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1387

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 464 RRKPPARQPAKNEDAGRETSAGPAHLSDHSEITDVTAGRSHAHAPD 327
           RR+ PA   +  +D+ +  +A      DHS     TA  + +  PD
Sbjct: 253 RRRKPAATTSTTDDSNKAVAAAANGTKDHSATAGTTASANGSDTPD 298



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>POLN_SLDV (Q8QL53) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
           (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1
          Length = 2593

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 21/89 (23%), Positives = 35/89 (39%)
 Frame = -1

Query: 428 EDAGRETSAGPAHLSDHSEITDVTAGRSHAHAPDGSAHGDAVAAEQDASAPVQCHRGSAS 249
           E+ GR+ +A P++      I DV          DG ++ D    +   S  + C RG+  
Sbjct: 521 EEEGRQQAANPSY------IADVLGQDDEEEVDDGMSNVDLGEEDGVGSTIIDCQRGTVK 574

Query: 248 VNTEMNTCCASKAYAKASNTALRSCRAPV 162
           V T        +    +  T LR+ +  V
Sbjct: 575 VITAFGDNTMGEYLVLSPVTVLRTRKLAV 603



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>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac|
          Length = 1120

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 1/123 (0%)
 Frame = -1

Query: 485 SESASVVRRKPPARQPAKNEDAGRETSAGPAHLSDHSEITDVTAGRSHAHAPDGSAHGDA 306
           +++A   R    +   A +      +SAG A            A  S   A   SA G A
Sbjct: 146 ADAADSARAASTSAGQAASSAQSASSSAGTASTKATEASKSAAAAESSKSAAATSA-GAA 204

Query: 305 VAAEQDASAPVQCHRGSAS-VNTEMNTCCASKAYAKASNTALRSCRAPVAPMYVSMVSSI 129
             +E +ASA +Q    SAS   T+ +    S   A AS  A +S     +    S  SS 
Sbjct: 205 KTSETNASASLQSAATSASTATTKASEAATSARDAAASKEAAKSSETNASSSASSAASSA 264

Query: 128 DGA 120
             A
Sbjct: 265 TAA 267


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,340,869
Number of Sequences: 219361
Number of extensions: 834327
Number of successful extensions: 3801
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3792
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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