ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06d09 |
|---|---|
| Clone Library Name | barley_pub |
>PSD13_MOUSE (Q9WVJ2) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 62.8 bits (151), Expect = 2e-10 Identities = 33/80 (41%), Positives = 47/80 (58%) Frame = +3 Query: 69 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 248 FL+ S+ P A + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 249 FESKINLLKFAHFAVVVSRQ 308 FE ++N L + V RQ Sbjct: 67 FEHRVNPLSLVEIILHVVRQ 86
>PSD13_CHICK (P84169) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 62.8 bits (151), Expect = 2e-10 Identities = 33/80 (41%), Positives = 46/80 (57%) Frame = +3 Query: 69 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 248 FL+ S P A + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 249 FESKINLLKFAHFAVVVSRQ 308 FE ++N L + V RQ Sbjct: 67 FEHRVNPLSLVEIILHVVRQ 86
>PSD13_BOVIN (Q5E964) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 62.8 bits (151), Expect = 2e-10 Identities = 33/80 (41%), Positives = 47/80 (58%) Frame = +3 Query: 69 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 248 FL+ S+ P A + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 249 FESKINLLKFAHFAVVVSRQ 308 FE ++N L + V RQ Sbjct: 67 FEHRVNPLSLVEIILHVVRQ 86
>PSD13_HUMAN (Q9UNM6) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 60.8 bits (146), Expect = 8e-10 Identities = 32/80 (40%), Positives = 46/80 (57%) Frame = +3 Query: 69 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 248 FL+ S+ P + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 249 FESKINLLKFAHFAVVVSRQ 308 FE ++N L + V RQ Sbjct: 67 FEHRVNPLSLVEIILHVVRQ 86
>RPN9_SCHPO (Q9US13) Probable 26S proteasome regulatory subunit rpn9| Length = 381 Score = 46.2 bits (108), Expect = 2e-05 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = +3 Query: 66 EFLEAQGSTRPE-LAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFI 242 +FL Q + PE L + Y + DLY+RKLW QLT L F + + LYT+F+ Sbjct: 11 DFLHDQATRAPESLQQSYILMEDLYERKLWKQLTDALIVF--FDTPETVPLRLPLYTNFV 68 Query: 243 SDFESKINLLKFAHFAV 293 + F IN LK + + Sbjct: 69 NSFRPNINQLKAVYMGL 85
>RPN9_YEAST (Q04062) 26S proteasome regulatory subunit RPN9 (Proteasome| non-ATPase subunit 7) Length = 393 Score = 35.0 bits (79), Expect = 0.048 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = +3 Query: 96 PELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISDFESKINLLK 275 P L + Y+ KLW QL+ L +F A ++ ++LY +F+S F KIN L Sbjct: 20 PSLHPLFEQFEKFYEEKLWFQLSESLTKFFDDA--KSTPLRLRLYDNFVSKFYDKINQLS 77 Query: 276 FAHF 287 + Sbjct: 78 VVKY 81
>ECTB_STRCO (Q93RW1) Diaminobutyrate--2-oxoglutarate transaminase (EC 2.6.1.76)| (Diaminobutyrate--2-oxoglutarate aminotransferase) (L-2,4-diaminobutyric acid transaminase) (DABA aminotransferase) Length = 423 Score = 32.7 bits (73), Expect = 0.24 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = +3 Query: 21 EGKGSGGDQAMAAPLEFLEAQGSTRPELAEWYAALADLYQRK 146 E +GSG ++ A +E ++ +G AEW ALADL +R+ Sbjct: 194 EDQGSGLNKPAAVIVETVQGEGGINVARAEWLRALADLCERQ 235
>FN3X_ARATH (Q9LEW8) Hypothetical 35.5 kDa protein At3g61080| Length = 318 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +3 Query: 84 GSTRPELAEWYAALADLY-QRKLWHQLTLKLDQFLALAVVQAGDALIQ 224 GST P++ W + + Y +++L +QL L DQ+ A+ Q G LIQ Sbjct: 159 GST-PQINTWSSDWIEFYGEKRLGYQLKLARDQYGDSAIYQKGHTLIQ 205
>ZIPA_VIBVY (Q7MMT6) Cell division protein zipA homolog| Length = 311 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +3 Query: 6 WPGRKEGKGSGGDQAMAAPLEFLEAQGSTRPELAEWYAALADLYQ 140 W +KEGK GD+ PL L+ G + P+ +E Y A D Y+ Sbjct: 25 WTSKKEGKAKFGDK----PLSKLDL-GESEPKESEMYVAPEDDYE 64
>ZIPA_VIBVU (Q8DFK4) Cell division protein zipA homolog| Length = 311 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +3 Query: 6 WPGRKEGKGSGGDQAMAAPLEFLEAQGSTRPELAEWYAALADLYQ 140 W +KEGK GD+ PL L+ G + P+ +E Y A D Y+ Sbjct: 25 WTSKKEGKAKFGDK----PLSKLDL-GESEPKESEMYVAPEDDYE 64
>PUR5_PROMM (Q7V581) Phosphoribosylformylglycinamidine cyclo-ligase (EC| 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) Length = 345 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/43 (32%), Positives = 19/43 (44%) Frame = +3 Query: 90 TRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDAL 218 TRPEL +W + + LWH L + L +A D L Sbjct: 271 TRPELFQWLQDAGQIPEHDLWHTFNLGVGFCLVVAEEVVSDVL 313
>ECTB_STRAW (Q829L4) Diaminobutyrate--2-oxoglutarate transaminase (EC 2.6.1.76)| (Diaminobutyrate--2-oxoglutarate aminotransferase) (L-2,4-diaminobutyric acid transaminase) (DABA aminotransferase) Length = 423 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +3 Query: 21 EGKGSGGDQAMAAPLEFLEAQGSTRPELAEWYAALADLYQRK 146 E +GSG ++ A +E ++ +G EW ALA+L +R+ Sbjct: 194 EDQGSGLNKPAAVIVETVQGEGGINVARPEWLRALAELCKRQ 235
>SHH_RAT (Q63673) Sonic hedgehog protein precursor (SHH) [Contains: Sonic| hedgehog protein N-product; Sonic hedgehog protein C-product] Length = 437 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +3 Query: 9 PGRKEGKGSGGDQAMAAPLEFLEAQGSTRPELAEWYAALADLYQRKLW 152 P R +G G G ++ AP EA+G+ P WY+ L LY W Sbjct: 378 PARTDGGGGG---SIPAPQSVAEARGAGPPAGIHWYSQL--LYHIGTW 420
>GLGC_ANASP (P30521) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)| (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) Length = 429 Score = 28.1 bits (61), Expect = 5.9 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +3 Query: 63 LEFLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQL-YTHF 239 +E L AQ + PE W+ AD ++ LW +D+FL L +GD L ++ Y F Sbjct: 82 VEVLAAQQT--PENPNWFQGTADAVRQYLWMLQEWDVDEFLIL----SGDHLYRMDYRLF 135 Query: 240 I 242 I Sbjct: 136 I 136
>ECTB_STRCH (Q6QUY9) Diaminobutyrate--2-oxoglutarate transaminase (EC 2.6.1.76)| (Diaminobutyrate--2-oxoglutarate aminotransferase) (L-2,4-diaminobutyric acid transaminase) (DABA aminotransferase) Length = 420 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +3 Query: 21 EGKGSGGDQAMAAPLEFLEAQGSTRPELAEWYAALADLYQRKL 149 E +GSG ++ A +E ++ +G AEW AL +L R++ Sbjct: 194 EDQGSGLNKPAAVIVETVQGEGGINVARAEWLRALQELCLRQV 236
>GLGC_SYNP6 (Q5N3K9) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)| (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (ADPGlc PPase) Length = 430 Score = 27.7 bits (60), Expect = 7.7 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +3 Query: 63 LEFLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQL-YTHF 239 +E L AQ PE W+ AD ++ LW +D++L L +GD L ++ Y+ F Sbjct: 83 VEVLAAQ--ITPENPNWFQGTADAVRQYLWLIKEWDVDEYLIL----SGDHLYRMDYSQF 136 Query: 240 I 242 I Sbjct: 137 I 137
>PGK_BACST (P18912) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 394 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 Query: 39 GDQAMAAPLEFLEAQGSTRPELAEWYAALADLY 137 GD + + F + PELA+ +A LADLY Sbjct: 109 GDVLLLENVRFYPGEEKNDPELAKAFAELADLY 141
>TRUD_PSEPK (Q88MF2) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 352 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +3 Query: 30 GSGGDQAMAAPLEFLEAQGSTRPELAEWYAALADLYQRKL 149 G G A AP + A G+ +P L +W A ++R++ Sbjct: 261 GEGASPAGGAPAQLENAIGARQPALCQWLAQAGMDHERRI 300
>DMPP_ACICA (Q7WTJ2) Phenol hydroxylase P5 protein (EC 1.14.13.7) (Phenol| 2-monooxygenase P5 component) Length = 352 Score = 27.3 bits (59), Expect = 10.0 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = +3 Query: 30 GSGGDQAMAAPLEFLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQA 206 GSG + L+ LE+ S L + LA+LY R+L+ QL F + + A Sbjct: 213 GSGLSSPQSMILDLLESGDSRTIYLFQGARDLAELYNRELFEQLVKDYPNFRYIPALNA 271 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,374,684 Number of Sequences: 219361 Number of extensions: 313822 Number of successful extensions: 1424 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1405 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1424 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
