ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart06d06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017292.1| Zea mays clone EL01N0315B08.c mRNA sequence Length = 1511 Score = 167 bits (84), Expect = 5e-38 Identities = 285/352 (80%) Strand = Plus / Plus Query: 160 cgcgccgcgacctgccgcctccacagaagacaatcgaaagatttgagaagatggtggaag 219 |||||||||||||||| ||||| |||||||||| ||||| |||||| |||||||| | Sbjct: 155 cgcgccgcgacctgcctcctcctgagaagacaattgaaaggcttgagagtatggtggatg 214 Query: 220 ggggaagttactacgaggcccaacaaatgttcaaatctaccagtgcaagatacattactt 279 | |||| || ||| || || |||||||||| ||| || ||||||||||| || ||| || Sbjct: 215 gaggaaatttctatgaagctcaacaaatgtacaagtcaaccagtgcaaggtatattgctg 274 Query: 280 gccaaaggtattcggaaggcttggacatccttcagtcaggagccacagtccagttgaagc 339 || | |||||| |||| ||||||||||||||||||||| || || || ||||||| Sbjct: 275 ctcagaagtattcagaagccttggacatccttcagtcaggcgctttggttcaattgaagc 334 Query: 340 atggacaggtaacttgtggtgctgaactcgctgtgctgttcgtggacactcttgtcaaag 399 |||||||||| || ||||||| |||||| ||||| || || || ||||| || ||| || Sbjct: 335 atggacaggttacctgtggtggtgaacttgctgtcctctttgttgacaccctcatcacag 394 Query: 400 ggcaatttccttataatgaacaaacttttgatcgtgtcagaaagatatacgaggcgttcc 459 | | |||| |||| |||||||| |||||||||| |||||||||| || ||||| |||| Sbjct: 395 gagagcttccatatagtgaacaaatttttgatcgtatcagaaagatgtatgaggcattcc 454 Query: 460 ccaggataaatatgccccatttccttggagatgattatgacgatgatgggca 511 | ||| ||| | | || ||||||||||||||||| ||||| ||||| ||||| Sbjct: 455 caagggtaactgttccacatttccttggagatgactatgatgatgaggggca 506
>dbj|AK066699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073F20, full insert sequence Length = 2221 Score = 117 bits (59), Expect = 4e-23 Identities = 146/175 (83%) Strand = Plus / Plus Query: 345 caggtaacttgtggtgctgaactcgctgtgctgttcgtggacactcttgtcaaagggcaa 404 |||||||||||||||| |||||| ||| | |||| |||||||| |||||||| | Sbjct: 740 caggtaacttgtggtggtgaacttgctataatgtttgtggacacccttgtcaaggcagcg 799 Query: 405 tttccttataatgaacaaacttttgatcgtgtcagaaagatatacgaggcgttccccagg 464 |||||||||||||| |||| ||||||||| |||||||||| ||||| || ||||||||| Sbjct: 800 cttccttataatgaagaaacctttgatcgtatcagaaagatgtacgacgccttccccagg 859 Query: 465 ataaatatgccccatttccttggagatgattatgacgatgatgggcagaaattat 519 ||| | | || || |||||||||||||||||||| || || ||||||||||||| Sbjct: 860 atatctgttccacacttccttggagatgattatgatgacgacgggcagaaattat 914 Score = 95.6 bits (48), Expect = 1e-16 Identities = 135/164 (82%) Strand = Plus / Plus Query: 159 tcgcgccgcgacctgccgcctccacagaagacaatcgaaagatttgagaagatggtggaa 218 ||||||||||||||||| ||||| ||| |||||||||||| ||||||| ||||||| Sbjct: 202 tcgcgccgcgacctgcctcctccccagcagacaatcgaaaagcttgagaatatggtggct 261 Query: 219 gggggaagttactacgaggcccaacaaatgttcaaatctaccagtgcaagatacattact 278 | |||| ||| || || ||||||||||||| ||| || ||| ||||||| || ||| || Sbjct: 262 gaaggaaattattatgaagcccaacaaatgtacaagtcaaccggtgcaaggtatattgct 321 Query: 279 tgccaaaggtattcggaaggcttggacatccttcagtcaggagc 322 || | ||||| ||||| |||||||||||||||||||||||| Sbjct: 322 gctcagaagtatttggaagccttggacatccttcagtcaggagc 365
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 429 gatcgtgtcagaaagatatacgaggcgttccccaggataaatatgccccatttccttgga 488 |||||| |||||||||| ||||| || |||||||||||| | | || || ||||||||| Sbjct: 3337819 gatcgtatcagaaagatgtacgacgccttccccaggatatctgttccacacttccttgga 3337878 Query: 489 gatgattatgacgatgatgggcagaaattat 519 ||||||||||| || || ||||||||||||| Sbjct: 3337879 gatgattatgatgacgacgggcagaaattat 3337909 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 287 gtattcggaaggcttggacatccttcagtcaggagc 322 ||||| ||||| |||||||||||||||||||||||| Sbjct: 3336929 gtatttggaagccttggacatccttcagtcaggagc 3336964 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 345 caggtaacttgtggtgctgaactcgctgtgctgttcgtggacactcttgtcaa 397 |||||||||||||||| |||||| ||| | |||| |||||||| |||||||| Sbjct: 3337339 caggtaacttgtggtggtgaacttgctataatgtttgtggacacccttgtcaa 3337391 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 ccgccgacgccgccgtgctcgccgg 116 ||||||||||||||| ||||||||| Sbjct: 24101067 ccgccgacgccgccgcgctcgccgg 24101091 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 cgccgccgtgctcgccggag 118 |||||||||||||||||||| Sbjct: 3664599 cgccgccgtgctcgccggag 3664580
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0701D05 Length = 172161 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 429 gatcgtgtcagaaagatatacgaggcgttccccaggataaatatgccccatttccttgga 488 |||||| |||||||||| ||||| || |||||||||||| | | || || ||||||||| Sbjct: 16189 gatcgtatcagaaagatgtacgacgccttccccaggatatctgttccacacttccttgga 16248 Query: 489 gatgattatgacgatgatgggcagaaattat 519 ||||||||||| || || ||||||||||||| Sbjct: 16249 gatgattatgatgacgacgggcagaaattat 16279 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 287 gtattcggaaggcttggacatccttcagtcaggagc 322 ||||| ||||| |||||||||||||||||||||||| Sbjct: 15299 gtatttggaagccttggacatccttcagtcaggagc 15334 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 345 caggtaacttgtggtgctgaactcgctgtgctgttcgtggacactcttgtcaa 397 |||||||||||||||| |||||| ||| | |||| |||||||| |||||||| Sbjct: 15709 caggtaacttgtggtggtgaacttgctataatgtttgtggacacccttgtcaa 15761
>dbj|AP003209.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1189A09 Length = 167761 Score = 77.8 bits (39), Expect = 3e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 429 gatcgtgtcagaaagatatacgaggcgttccccaggataaatatgccccatttccttgga 488 |||||| |||||||||| ||||| || |||||||||||| | | || || ||||||||| Sbjct: 155448 gatcgtatcagaaagatgtacgacgccttccccaggatatctgttccacacttccttgga 155507 Query: 489 gatgattatgacgatgatgggcagaaattat 519 ||||||||||| || || ||||||||||||| Sbjct: 155508 gatgattatgatgacgacgggcagaaattat 155538 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 287 gtattcggaaggcttggacatccttcagtcaggagc 322 ||||| ||||| |||||||||||||||||||||||| Sbjct: 154558 gtatttggaagccttggacatccttcagtcaggagc 154593 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 345 caggtaacttgtggtgctgaactcgctgtgctgttcgtggacactcttgtcaa 397 |||||||||||||||| |||||| ||| | |||| |||||||| |||||||| Sbjct: 154968 caggtaacttgtggtggtgaacttgctataatgtttgtggacacccttgtcaa 155020
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 200 atttgagaagatggtggaaggg 221 |||||||||||||||||||||| Sbjct: 397523 atttgagaagatggtggaaggg 397502
>ref|XM_570748.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNE01450) partial mRNA Length = 4115 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 200 atttgagaagatggtggaaggg 221 |||||||||||||||||||||| Sbjct: 2878 atttgagaagatggtggaaggg 2857
>ref|NM_192729.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3006 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 ccgccgacgccgccgtgctcgccgg 116 ||||||||||||||| ||||||||| Sbjct: 874 ccgccgacgccgccgcgctcgccgg 850
>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome Length = 920079 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 407 tccttataatgaacaaacttttgat 431 ||||||||||||| ||||||||||| Sbjct: 122463 tccttataatgaaaaaacttttgat 122439
>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome Length = 897405 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 407 tccttataatgaacaaacttttgat 431 ||||||||||||| ||||||||||| Sbjct: 117162 tccttataatgaaaaaacttttgat 117138
>gb|AC110490.6| Homo sapiens 3 BAC RP11-426N12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 26995 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 486 ggagatgattatgacgatgat 506 ||||||||||||||||||||| Sbjct: 1299 ggagatgattatgacgatgat 1279
>gb|AC104472.14| Homo sapiens 3 BAC RP11-674E16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158702 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 ggagatgattatgacgatgat 506 ||||||||||||||||||||| Sbjct: 124061 ggagatgattatgacgatgat 124081
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 ccgccgacgccgccgtgctcgccgg 116 ||||||||||||||| ||||||||| Sbjct: 76889 ccgccgacgccgccgcgctcgccgg 76913
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 153 tcggcctcgcgccgcgacctgccgc 177 |||||||||||| |||||||||||| Sbjct: 3996464 tcggcctcgcgcggcgacctgccgc 3996488
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 90 caccgccgacgccgccgtgctcgcc 114 |||||||| |||||||||||||||| Sbjct: 3678564 caccgccgtcgccgccgtgctcgcc 3678588
>gb|AF181457.1|AF181457 Hordeum vulgare dehydrin (Dhn7) mRNA, complete cds Length = 654 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 128 gccgacgccgccgtgctcgcc 108
>emb|AM087403.1| Streptomyces venezuelae pSVH1 plasmid Length = 12652 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 cgatcaccgccgacgccgccg 106 ||||||||||||||||||||| Sbjct: 9215 cgatcaccgccgacgccgccg 9235
>gb|AY895931.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 560559 dehydrin 7 (Dhn7) gene, complete cds Length = 1371 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 271 gccgacgccgccgtgctcgcc 251
>gb|AY895930.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 559556 dehydrin 7 (Dhn7) gene, complete cds Length = 1370 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 275 gccgacgccgccgtgctcgcc 255
>gb|AY895929.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 531957 dehydrin 7 (Dhn7) gene, complete cds Length = 1370 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 275 gccgacgccgccgtgctcgcc 255
>gb|AY895926.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 466460 dehydrin 7 (Dhn7) gene, complete cds Length = 1370 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 275 gccgacgccgccgtgctcgcc 255
>gb|AY895925.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 420916 dehydrin 7 (Dhn7) gene, complete cds Length = 1373 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 271 gccgacgccgccgtgctcgcc 251
>gb|AY895924.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 420913 dehydrin 7 (Dhn7) gene, complete cds Length = 1375 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 271 gccgacgccgccgtgctcgcc 251
>gb|AY895921.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 406276 dehydrin 7 (Dhn7) gene, complete cds Length = 1373 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 271 gccgacgccgccgtgctcgcc 251
>gb|AY895920.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 401371 dehydrin 7 (Dhn7) gene, complete cds Length = 1363 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 268 gccgacgccgccgtgctcgcc 248
>gb|AY895919.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 401370 dehydrin 7 (Dhn7) gene, complete cds Length = 1366 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 271 gccgacgccgccgtgctcgcc 251
>gb|AY895917.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 296926 dehydrin 7 (Dhn7) gene, complete cds Length = 1370 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 275 gccgacgccgccgtgctcgcc 255
>gb|AY895915.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 293409 dehydrin 7 (Dhn7) gene, complete cds Length = 1366 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 271 gccgacgccgccgtgctcgcc 251
>gb|AY895910.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 253933 dehydrin 7 (Dhn7) gene, complete cds Length = 1363 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 268 gccgacgccgccgtgctcgcc 248
>gb|AY895909.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 236388 dehydrin 7 (Dhn7) gene, complete cds Length = 1369 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 275 gccgacgccgccgtgctcgcc 255
>gb|AY895905.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 212305 dehydrin 7 (Dhn7) gene, complete cds Length = 1363 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gccgacgccgccgtgctcgcc 114 ||||||||||||||||||||| Sbjct: 268 gccgacgccgccgtgctcgcc 248
>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome Length = 892758 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 407 tccttataatgaacaaacttttgat 431 ||||||||||||| ||||||||||| Sbjct: 324875 tccttataatgaaaaaacttttgat 324899
>gb|AC115786.8| Mus musculus chromosome 5, clone RP23-170E15, complete sequence Length = 193480 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cactcttgtcaaagggcaat 405 |||||||||||||||||||| Sbjct: 64771 cactcttgtcaaagggcaat 64752
>gb|AC164397.6| Mus musculus chromosome 1, clone RP23-276M15, complete sequence Length = 196086 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ttcaaatctaccagtgcaag 268 |||||||||||||||||||| Sbjct: 169574 ttcaaatctaccagtgcaag 169555
>ref|XM_632082.1| Dictyostelium discoideum hypothetical protein (DDB0191526), partial mRNA Length = 7845 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 ccatttccttggagatgatt 495 |||||||||||||||||||| Sbjct: 7288 ccatttccttggagatgatt 7269
>ref|XM_462816.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1006 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 cgccgccgtgctcgccggag 118 |||||||||||||||||||| Sbjct: 449 cgccgccgtgctcgccggag 468
>ref|XM_469839.1| Oryza sativa (japonica cultivar-group), mRNA Length = 645 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ccgccgacgccgccgtgctcgccg 115 |||||| ||||||||||||||||| Sbjct: 455 ccgccgccgccgccgtgctcgccg 478
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ccgccgacgccgccgtgctcgccg 115 ||||||||||||||| |||||||| Sbjct: 3117323 ccgccgacgccgccgcgctcgccg 3117346
>gb|AC185243.2| Pan troglodytes BAC clone CH251-228E19 from chromosome 3, complete sequence Length = 222273 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 agatggtggaagggggaagt 227 |||||||||||||||||||| Sbjct: 100921 agatggtggaagggggaagt 100902
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ccgccgacgccgccgtgctcgccg 115 ||||||||||||||| |||||||| Sbjct: 2671947 ccgccgacgccgccgcgctcgccg 2671924
>gb|AC148334.3| Mus musculus BAC clone RP23-213L20 from chromosome 13, complete sequence Length = 207106 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 ccccatttccttggagatga 493 |||||||||||||||||||| Sbjct: 43774 ccccatttccttggagatga 43793
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cgccgcgattccgatcaccg 94 |||||||||||||||||||| Sbjct: 330896 cgccgcgattccgatcaccg 330877
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ccgccgacgccgccgtgctcgccg 115 |||||| ||||||||||||||||| Sbjct: 31055822 ccgccgccgccgccgtgctcgccg 31055799
>gb|AC139886.3| Mus musculus BAC clone RP23-120M10 from chromosome 15, complete sequence Length = 211336 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 atggtggaagggggaagttactac 233 |||||||||||||||||| ||||| Sbjct: 80374 atggtggaagggggaagtgactac 80351
>gb|AC138225.11| Mus musculus chromosome 1, clone RP23-164F17, complete sequence Length = 239758 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ttcaaatctaccagtgcaag 268 |||||||||||||||||||| Sbjct: 89485 ttcaaatctaccagtgcaag 89504
>gb|AC115299.4| Mus musculus BAC clone RP23-444O19 from 13, complete sequence Length = 201296 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 ccccatttccttggagatga 493 |||||||||||||||||||| Sbjct: 77718 ccccatttccttggagatga 77699
>gb|AC117756.8| Mus musculus chromosome 1, clone RP24-419N8, complete sequence Length = 174783 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ttcaaatctaccagtgcaag 268 |||||||||||||||||||| Sbjct: 133564 ttcaaatctaccagtgcaag 133583
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ccgccgacgccgccgtgctcgccg 115 |||||| ||||||||||||||||| Sbjct: 40242 ccgccgccgccgccgtgctcgccg 40265
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cgatcaccgccgacgccgcc 105 |||||||||||||||||||| Sbjct: 217679 cgatcaccgccgacgccgcc 217660
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 tccgatcaccgccgacgccgccgt 107 ||||||||||||| |||||||||| Sbjct: 37848 tccgatcaccgcctacgccgccgt 37871
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cgatcaccgccgacgccgcc 105 |||||||||||||||||||| Sbjct: 16577 cgatcaccgccgacgccgcc 16558
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cgatcaccgccgacgccgcc 105 |||||||||||||||||||| Sbjct: 196732 cgatcaccgccgacgccgcc 196713
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cgccgacgccgccgtgctcg 112 |||||||||||||||||||| Sbjct: 1167930 cgccgacgccgccgtgctcg 1167949
>gb|DQ311296.1| Bombyx mori nuclear Y/CCAAT-box binding factor C subunit NF/YC mRNA, complete cds Length = 1347 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ccgccgacgccgccgtgctcgccg 115 |||||| ||||||||||||||||| Sbjct: 818 ccgccgccgccgccgtgctcgccg 795
>gb|DQ311249.1| Bombyx mori calcium-binding protein p22 mRNA, complete cds Length = 2167 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ccgccgacgccgccgtgctcgccg 115 |||||| ||||||||||||||||| Sbjct: 1942 ccgccgccgccgccgtgctcgccg 1965
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 gaagacaatcgaaagatttgagaa 208 ||||||||||||||| |||||||| Sbjct: 19605786 gaagacaatcgaaagttttgagaa 19605809
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ccgccgacgccgccgtgctcgccg 115 |||||| ||||||||||||||||| Sbjct: 31146345 ccgccgccgccgccgtgctcgccg 31146322
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 92 ccgccgacgccgccgtgctcgccggaga 119 |||||||||||||| ||| ||||||||| Sbjct: 27101575 ccgccgacgccgccctgcacgccggaga 27101602
>gb|AC026239.4|AC026239 Homo sapiens chromosome 7 clone RP11-335B7, complete sequence Length = 153619 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tgagaagatggtggaagggg 222 |||||||||||||||||||| Sbjct: 66138 tgagaagatggtggaagggg 66157
>gb|AC009365.9|AC009365 Homo sapiens chromosome 7 clone RP11-355K3, complete sequence Length = 222794 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tgagaagatggtggaagggg 222 |||||||||||||||||||| Sbjct: 17043 tgagaagatggtggaagggg 17062
>dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0583G08 Length = 135295 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 cgccgccgtgctcgccggag 118 |||||||||||||||||||| Sbjct: 73079 cgccgccgtgctcgccggag 73060
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 87 gatcaccgccgacgccgccgtgctcgcc 114 ||||||||||||||||| |||| ||||| Sbjct: 2367054 gatcaccgccgacgccgtcgtggtcgcc 2367027
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 92 ccgccgacgccgccgtgctcgccggaga 119 |||||||||||||| ||| ||||||||| Sbjct: 73224 ccgccgacgccgccctgcacgccggaga 73251
>dbj|AK111084.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-F07, full insert sequence Length = 1008 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 cgccgccgtgctcgccggag 118 |||||||||||||||||||| Sbjct: 451 cgccgccgtgctcgccggag 470
>dbj|AK102002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079N03, full insert sequence Length = 759 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ccgccgacgccgccgtgctcgccg 115 |||||| ||||||||||||||||| Sbjct: 592 ccgccgccgccgccgtgctcgccg 615
>dbj|AK059403.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B07, full insert sequence Length = 1028 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ccgccgacgccgccgtgctcgccg 115 |||||| ||||||||||||||||| Sbjct: 724 ccgccgccgccgccgtgctcgccg 747
>gb|AY895914.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 293402 dehydrin 7 (Dhn7) gene, complete cds Length = 1366 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ccgacgccgccgtgctcgcc 114 |||||||||||||||||||| Sbjct: 270 ccgacgccgccgtgctcgcc 251
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cgccgacgccgccgtgctcg 112 |||||||||||||||||||| Sbjct: 30600 cgccgacgccgccgtgctcg 30581
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ccgccgacgccgccgtgctcgccg 115 ||||||||||||||| |||||||| Sbjct: 2165847 ccgccgacgccgccgcgctcgccg 2165870
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 gaagacaatcgaaagatttgagaa 208 ||||||||||||||| |||||||| Sbjct: 56512 gaagacaatcgaaagttttgagaa 56535
>dbj|AB023655.1| Dictyostelium discoideum talB mRNA for talin homologue, complete cds Length = 7845 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 ccatttccttggagatgatt 495 |||||||||||||||||||| Sbjct: 7288 ccatttccttggagatgatt 7269 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,001,593 Number of Sequences: 3902068 Number of extensions: 4001593 Number of successful extensions: 84351 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82919 Number of HSP's gapped (non-prelim): 1421 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
