ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet99h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.013
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
3dbj|AK105138.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.013
4dbj|AK104844.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.013
5dbj|AK065180.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.013
6dbj|D63955.1| Oryza sativa glip19 gene, complete cds 48 0.013
7gb|AC026329.14| Homo sapiens 3 BAC RP11-325J6 (Roswell Park Canc... 44 0.20
8emb|AL662838.12| Mouse DNA sequence from clone RP23-378I13 on ch... 42 0.80
9emb|BX247952.2| Mouse DNA sequence from clone RP24-405K16 on chr... 42 0.80
10gb|AC018781.9| Homo sapiens chromosome 8, clone RP11-302J23, com... 42 0.80
11gb|AC122360.4| Mus musculus BAC clone RP23-428P21 from chromosom... 42 0.80
12gb|BC076532.1| Danio rerio adenosine deaminase, mRNA (cDNA clone... 42 0.80
13ref|NM_001002646.1| Danio rerio adenosine deaminase (ada), mRNA 42 0.80
14dbj|AP003689.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 0.80
15ref|XM_522959.1| PREDICTED: Pan troglodytes similar to RIKEN cDN... 40 3.2
16gb|AC149234.1| Pan troglodytes chromosome X clone PTB-085L05 map... 40 3.2
17gb|AC149233.1| Pan troglodytes chromosome X clone RP43-034P07 ma... 40 3.2
18emb|AL772234.5| Mouse DNA sequence from clone RP23-413M22 on chr... 40 3.2
19gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, co... 40 3.2
20ref|XM_941093.1| PREDICTED: Homo sapiens chromosome 14 open read... 40 3.2
21ref|XM_040910.7| PREDICTED: Homo sapiens chromosome 14 open read... 40 3.2
22emb|AL161669.5|CNS01RHC Human chromosome 14 DNA sequence BAC R-7... 40 3.2
23gb|AC002368.1|AC002368 Homo sapiens Xq28 BAC PAC and cosmid clon... 40 3.2

>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0056I11,
              complete sequence
          Length = 145796

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 20     cttatgcattagagcccccggagt 43
              ||||||||||||||||||||||||
Sbjct: 109495 cttatgcattagagcccccggagt 109518



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 20      cttatgcattagagcccccggagt 43
               ||||||||||||||||||||||||
Sbjct: 1657335 cttatgcattagagcccccggagt 1657358



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>dbj|AK105138.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F02,
          full insert sequence
          Length = 1182

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 20 cttatgcattagagcccccggagt 43
          ||||||||||||||||||||||||
Sbjct: 25 cttatgcattagagcccccggagt 48



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>dbj|AK104844.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G08,
          full insert sequence
          Length = 1344

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 20 cttatgcattagagcccccggagt 43
          ||||||||||||||||||||||||
Sbjct: 15 cttatgcattagagcccccggagt 38



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>dbj|AK065180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D17,
          full insert sequence
          Length = 1375

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 20 cttatgcattagagcccccggagt 43
          ||||||||||||||||||||||||
Sbjct: 26 cttatgcattagagcccccggagt 49



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>dbj|D63955.1| Oryza sativa glip19 gene, complete cds
          Length = 3139

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 20   cttatgcattagagcccccggagt 43
            ||||||||||||||||||||||||
Sbjct: 1684 cttatgcattagagcccccggagt 1707



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>gb|AC026329.14| Homo sapiens 3 BAC RP11-325J6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 117404

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 181   ccagcctcagctccttggtcct 202
             ||||||||||||||||||||||
Sbjct: 80101 ccagcctcagctccttggtcct 80122



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>emb|AL662838.12| Mouse DNA sequence from clone RP23-378I13 on chromosome 11 Contains the
             3' end of the Mbtd1 gene for mbt domain containing 1, the
             Nme2 gene for expressed in non-metastatic cells 2 protein,
             the Nme1 gene for expressed in non-metastatic cells 1
             protein, the Spag9 gene for sperm associated antigen 9 and
             a ribosomal protein L27 (Rpl27) pseudogene, complete
             sequence
          Length = 215435

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 111   ctctttccttagagtctgctc 131
             |||||||||||||||||||||
Sbjct: 57314 ctctttccttagagtctgctc 57294



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>emb|BX247952.2| Mouse DNA sequence from clone RP24-405K16 on chromosome 4, complete
             sequence
          Length = 117872

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    gctttctcccttccccttctt 89
             |||||||||||||||||||||
Sbjct: 43489 gctttctcccttccccttctt 43469



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>gb|AC018781.9| Homo sapiens chromosome 8, clone RP11-302J23, complete sequence
          Length = 190984

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 65     tcctgctttctcccttccccttctt 89
              ||||||||| |||||||||||||||
Sbjct: 149633 tcctgctttgtcccttccccttctt 149609



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>gb|AC122360.4| Mus musculus BAC clone RP23-428P21 from chromosome 10, complete
             sequence
          Length = 210757

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    tttctcccttccccttcttac 91
             |||||||||||||||||||||
Sbjct: 72306 tttctcccttccccttcttac 72286



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>gb|BC076532.1| Danio rerio adenosine deaminase, mRNA (cDNA clone MGC:92028
            IMAGE:7044437), complete cds
          Length = 2340

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 55   tgcagctaagtcctgctttct 75
            |||||||||||||||||||||
Sbjct: 1093 tgcagctaagtcctgctttct 1113



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>ref|NM_001002646.1| Danio rerio adenosine deaminase (ada), mRNA
          Length = 2340

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 55   tgcagctaagtcctgctttct 75
            |||||||||||||||||||||
Sbjct: 1093 tgcagctaagtcctgctttct 1113



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>dbj|AP003689.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1139G1
          Length = 155359

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 65    tcctgctttctcccttccccttctt 89
             ||||||||| |||||||||||||||
Sbjct: 11514 tcctgctttgtcccttccccttctt 11538



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>ref|XM_522959.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 1200009I06
           (LOC467564), mRNA
          Length = 2787

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 ctgctccctgttccggtcct 145
           ||||||||||||||||||||
Sbjct: 555 ctgctccctgttccggtcct 574



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>gb|AC149234.1| Pan troglodytes chromosome X clone PTB-085L05 map human ortholog q28,
             complete sequence
          Length = 186825

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    tcctgctttctcccttcccc 84
             ||||||||||||||||||||
Sbjct: 14283 tcctgctttctcccttcccc 14302



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>gb|AC149233.1| Pan troglodytes chromosome X clone RP43-034P07 map human ortholog q28,
              complete sequence
          Length = 169963

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     tcctgctttctcccttcccc 84
              ||||||||||||||||||||
Sbjct: 121516 tcctgctttctcccttcccc 121535



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>emb|AL772234.5| Mouse DNA sequence from clone RP23-413M22 on chromosome 11, complete
              sequence
          Length = 193528

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     ctttctcccttccccttctt 89
              ||||||||||||||||||||
Sbjct: 118183 ctttctcccttccccttctt 118164



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>gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, complete sequence
          Length = 197907

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     ctttctcccttccccttctt 89
              ||||||||||||||||||||
Sbjct: 179961 ctttctcccttccccttctt 179980



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>ref|XM_941093.1| PREDICTED: Homo sapiens chromosome 14 open reading frame 73
           (C14orf73), mRNA
          Length = 2526

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 ctgctccctgttccggtcct 145
           ||||||||||||||||||||
Sbjct: 264 ctgctccctgttccggtcct 283



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>ref|XM_040910.7| PREDICTED: Homo sapiens chromosome 14 open reading frame 73
           (C14orf73), mRNA
          Length = 2526

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 ctgctccctgttccggtcct 145
           ||||||||||||||||||||
Sbjct: 264 ctgctccctgttccggtcct 283



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>emb|AL161669.5|CNS01RHC Human chromosome 14 DNA sequence BAC R-736N17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192462

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    ctgctccctgttccggtcct 145
              ||||||||||||||||||||
Sbjct: 139960 ctgctccctgttccggtcct 139941



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>gb|AC002368.1|AC002368 Homo sapiens Xq28 BAC PAC and cosmid clones containing FMR2 gene exons
             1,2, and 3, complete sequence
          Length = 324816

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    tcctgctttctcccttcccc 84
             ||||||||||||||||||||
Sbjct: 80346 tcctgctttctcccttcccc 80365


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,090,394
Number of Sequences: 3902068
Number of extensions: 2090394
Number of successful extensions: 43869
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43827
Number of HSP's gapped (non-prelim): 42
length of query: 246
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 224
effective length of database: 17,147,199,772
effective search space: 3840972748928
effective search space used: 3840972748928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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