| Clone Name | baet99h05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0056I11, complete sequence Length = 145796 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Plus Query: 20 cttatgcattagagcccccggagt 43 |||||||||||||||||||||||| Sbjct: 109495 cttatgcattagagcccccggagt 109518
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Plus Query: 20 cttatgcattagagcccccggagt 43 |||||||||||||||||||||||| Sbjct: 1657335 cttatgcattagagcccccggagt 1657358
>dbj|AK105138.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F02, full insert sequence Length = 1182 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Plus Query: 20 cttatgcattagagcccccggagt 43 |||||||||||||||||||||||| Sbjct: 25 cttatgcattagagcccccggagt 48
>dbj|AK104844.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G08, full insert sequence Length = 1344 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Plus Query: 20 cttatgcattagagcccccggagt 43 |||||||||||||||||||||||| Sbjct: 15 cttatgcattagagcccccggagt 38
>dbj|AK065180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D17, full insert sequence Length = 1375 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Plus Query: 20 cttatgcattagagcccccggagt 43 |||||||||||||||||||||||| Sbjct: 26 cttatgcattagagcccccggagt 49
>dbj|D63955.1| Oryza sativa glip19 gene, complete cds Length = 3139 Score = 48.1 bits (24), Expect = 0.013 Identities = 24/24 (100%) Strand = Plus / Plus Query: 20 cttatgcattagagcccccggagt 43 |||||||||||||||||||||||| Sbjct: 1684 cttatgcattagagcccccggagt 1707
>gb|AC026329.14| Homo sapiens 3 BAC RP11-325J6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 117404 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 ccagcctcagctccttggtcct 202 |||||||||||||||||||||| Sbjct: 80101 ccagcctcagctccttggtcct 80122
>emb|AL662838.12| Mouse DNA sequence from clone RP23-378I13 on chromosome 11 Contains the 3' end of the Mbtd1 gene for mbt domain containing 1, the Nme2 gene for expressed in non-metastatic cells 2 protein, the Nme1 gene for expressed in non-metastatic cells 1 protein, the Spag9 gene for sperm associated antigen 9 and a ribosomal protein L27 (Rpl27) pseudogene, complete sequence Length = 215435 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 ctctttccttagagtctgctc 131 ||||||||||||||||||||| Sbjct: 57314 ctctttccttagagtctgctc 57294
>emb|BX247952.2| Mouse DNA sequence from clone RP24-405K16 on chromosome 4, complete sequence Length = 117872 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 gctttctcccttccccttctt 89 ||||||||||||||||||||| Sbjct: 43489 gctttctcccttccccttctt 43469
>gb|AC018781.9| Homo sapiens chromosome 8, clone RP11-302J23, complete sequence Length = 190984 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 65 tcctgctttctcccttccccttctt 89 ||||||||| ||||||||||||||| Sbjct: 149633 tcctgctttgtcccttccccttctt 149609
>gb|AC122360.4| Mus musculus BAC clone RP23-428P21 from chromosome 10, complete sequence Length = 210757 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 tttctcccttccccttcttac 91 ||||||||||||||||||||| Sbjct: 72306 tttctcccttccccttcttac 72286
>gb|BC076532.1| Danio rerio adenosine deaminase, mRNA (cDNA clone MGC:92028 IMAGE:7044437), complete cds Length = 2340 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 tgcagctaagtcctgctttct 75 ||||||||||||||||||||| Sbjct: 1093 tgcagctaagtcctgctttct 1113
>ref|NM_001002646.1| Danio rerio adenosine deaminase (ada), mRNA Length = 2340 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 tgcagctaagtcctgctttct 75 ||||||||||||||||||||| Sbjct: 1093 tgcagctaagtcctgctttct 1113
>dbj|AP003689.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1139G1 Length = 155359 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 tcctgctttctcccttccccttctt 89 ||||||||| ||||||||||||||| Sbjct: 11514 tcctgctttgtcccttccccttctt 11538
>ref|XM_522959.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 1200009I06 (LOC467564), mRNA Length = 2787 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ctgctccctgttccggtcct 145 |||||||||||||||||||| Sbjct: 555 ctgctccctgttccggtcct 574
>gb|AC149234.1| Pan troglodytes chromosome X clone PTB-085L05 map human ortholog q28, complete sequence Length = 186825 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tcctgctttctcccttcccc 84 |||||||||||||||||||| Sbjct: 14283 tcctgctttctcccttcccc 14302
>gb|AC149233.1| Pan troglodytes chromosome X clone RP43-034P07 map human ortholog q28, complete sequence Length = 169963 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tcctgctttctcccttcccc 84 |||||||||||||||||||| Sbjct: 121516 tcctgctttctcccttcccc 121535
>emb|AL772234.5| Mouse DNA sequence from clone RP23-413M22 on chromosome 11, complete sequence Length = 193528 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ctttctcccttccccttctt 89 |||||||||||||||||||| Sbjct: 118183 ctttctcccttccccttctt 118164
>gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, complete sequence Length = 197907 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ctttctcccttccccttctt 89 |||||||||||||||||||| Sbjct: 179961 ctttctcccttccccttctt 179980
>ref|XM_941093.1| PREDICTED: Homo sapiens chromosome 14 open reading frame 73 (C14orf73), mRNA Length = 2526 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ctgctccctgttccggtcct 145 |||||||||||||||||||| Sbjct: 264 ctgctccctgttccggtcct 283
>ref|XM_040910.7| PREDICTED: Homo sapiens chromosome 14 open reading frame 73 (C14orf73), mRNA Length = 2526 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ctgctccctgttccggtcct 145 |||||||||||||||||||| Sbjct: 264 ctgctccctgttccggtcct 283
>emb|AL161669.5|CNS01RHC Human chromosome 14 DNA sequence BAC R-736N17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192462 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ctgctccctgttccggtcct 145 |||||||||||||||||||| Sbjct: 139960 ctgctccctgttccggtcct 139941
>gb|AC002368.1|AC002368 Homo sapiens Xq28 BAC PAC and cosmid clones containing FMR2 gene exons 1,2, and 3, complete sequence Length = 324816 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tcctgctttctcccttcccc 84 |||||||||||||||||||| Sbjct: 80346 tcctgctttctcccttcccc 80365 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,090,394 Number of Sequences: 3902068 Number of extensions: 2090394 Number of successful extensions: 43869 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43827 Number of HSP's gapped (non-prelim): 42 length of query: 246 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 224 effective length of database: 17,147,199,772 effective search space: 3840972748928 effective search space used: 3840972748928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)