ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet99g05 |
|---|---|
| Clone Library Name | barley_pub |
>PP2C4_ARATH (P49598) Protein phosphatase 2C (EC 3.1.3.16) (PP2C)| Length = 399 Score = 30.0 bits (66), Expect = 3.2 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = +3 Query: 222 GKKGPNQDAVILCQGF---GMEDGVFCGVFDGHGRCGHLVSK 338 G++ +DAV + F E+ F GVFDGHG C H+ K Sbjct: 112 GRRRDMEDAVSIHPSFLQRNSENHHFYGVFDGHG-CSHVAEK 152
>PP2C2_SCHPO (Q09172) Protein phosphatase 2C homolog 2 (EC 3.1.3.16) (PP2C-2)| Length = 370 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = +3 Query: 288 FCGVFDGHGRCGHLVSKLVRDYLPFMVLS 374 F GVFDGHG G V+K R +LP ++ S Sbjct: 58 FFGVFDGHG--GDRVAKYCRQHLPDIIKS 84
>PURBA_XENLA (Q6PAC9) Transcriptional activator protein Pur-beta-A (Purine-rich| element-binding protein B-A) Length = 322 Score = 29.3 bits (64), Expect = 5.4 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +3 Query: 105 EHLGQQGQDADESIVYVMDEEGGGGASSPRK 197 EH Q G + E I E+G GG PR+ Sbjct: 90 EHYAQLGPSSPEQIAQASGEDGAGGPGGPRR 120
>PDP2_HUMAN (Q9P2J9) [Pyruvate dehydrogenase [lipoamide]]-phosphatase 2,| mitochondrial precursor (EC 3.1.3.43) (PDP 2) (Pyruvate dehydrogenase phosphatase, catalytic subunit 2) (PDPC 2) Length = 529 Score = 29.3 bits (64), Expect = 5.4 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Frame = +3 Query: 279 DGVFCGVFDGHG--RCGHLVSKLVRDYLPFMVLSHR 380 +G+ G+FDGHG C VS+ + Y+ ++SH+ Sbjct: 133 NGLMFGIFDGHGGHACAQAVSERLFYYVAVSLMSHQ 168
>HEM6_PROMP (Q7UZS3) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)| (Coproporphyrinogen III oxidase, aerobic) (Coproporphyrinogenase) (Coprogen oxidase) Length = 342 Score = 29.3 bits (64), Expect = 5.4 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +3 Query: 90 ICASSEHLGQQGQDADESIVYVMDEEGGGGASSPRKVASLFSQKG 224 IC E++ + + +ES + EEGGGG S K S+F Q G Sbjct: 24 ICKGLENIDGKAKFTEESW---LREEGGGGKSRVLKNGSIFEQAG 65
>PURBB_XENLA (Q8AVS4) Transcriptional activator protein Pur-beta-B (Purine-rich| element binding protein B-B) Length = 327 Score = 29.3 bits (64), Expect = 5.4 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +3 Query: 105 EHLGQQGQDADESIVYVMDEEGGGGASSPRK 197 EH Q G + E I E+G GG PR+ Sbjct: 90 EHYAQLGPSSPEQIAQASGEDGAGGPGGPRR 120
>TMG2_MOUSE (Q8R182) Transmembrane gamma-carboxyglutamic acid protein 2| precursor (Proline-rich Gla protein 2) (Proline-rich gamma-carboxyglutamic acid protein 2) (NEDD4 WW domain-binding protein 1) Length = 198 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = -2 Query: 316 LPWPSNTPQNTPSSMPNPWQRMTASWLGPFLPFWEKREATFLGDDAPPPPSSSI 155 +P TPQ+ P L P LP +E+ A DAPPPP SS+ Sbjct: 155 IPLSPQTPQSPP--------------LPPGLPTYEQALAASGVHDAPPPPYSSL 194
>PDP2_RAT (O88484) [Pyruvate dehydrogenase [lipoamide]]-phosphatase 2,| mitochondrial precursor (EC 3.1.3.43) (PDP 2) (Pyruvate dehydrogenase phosphatase, catalytic subunit 2) (PDPC 2) Length = 530 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = +3 Query: 282 GVFCGVFDGHG--RCGHLVSKLVRDYLPFMVLSHR 380 G G+FDGHG C VS+ + Y+ ++SH+ Sbjct: 135 GTVFGIFDGHGGHACAQAVSERLFYYMAVSLMSHK 169
>KCNH3_HUMAN (Q9ULD8) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (ELK2) (Brain-specific eag-like channel 1) (BEC1) Length = 1083 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 9/38 (23%) Frame = -2 Query: 325 WPH---------LPWPSNTPQNTPSSMPNPWQRMTASW 239 WPH PWP P+S +PW R TA W Sbjct: 961 WPHPRPGPPPLMAPWP----WGPPASQSSPWPRATAFW 994
>KCNH3_RAT (O89047) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (rElk2) (Brain-specific eag-like channel 1) (BEC1) Length = 1087 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 7/36 (19%) Frame = -2 Query: 325 WPHLPWPSNTPQ-------NTPSSMPNPWQRMTASW 239 WPH P P + P P+S +PW R TA W Sbjct: 964 WPH-PRPGHPPPLMAPWPWGPPASQSSPWPRATALW 998
>KCNH3_MOUSE (Q9WVJ0) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (mElk2) Length = 1087 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 7/36 (19%) Frame = -2 Query: 325 WPHLPWPSNTPQ-------NTPSSMPNPWQRMTASW 239 WPH P P + P P+S +PW R TA W Sbjct: 964 WPH-PRPGHPPPLMAPWPWGPPASQSSPWPRATALW 998
>SANT_PLAFV (P09593) S-antigen protein precursor| Length = 375 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Frame = +3 Query: 123 GQDADESIVYVMDEEGGGGASSPRKVASLFSQ--KGKKGPNQD 245 GQD + V V E+GG G+ P+ S+ KG GP + Sbjct: 90 GQDGSDQEVKVQKEQGGPGSEGPKGTGGPGSEGPKGTGGPGSE 132
>YCW9_YEAST (P25646) Protein phophatase 2C-like protein YCR079W| Length = 442 Score = 28.5 bits (62), Expect = 9.2 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +3 Query: 291 CGVFDGHGRCGHLVSKLVRDYL 356 C VFDGHG G +S+L+ D L Sbjct: 64 CSVFDGHGEKGAQLSQLLADKL 85
>COLL4_MIMIV (Q5UPS7) Collagen-like protein 4| Length = 817 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/59 (25%), Positives = 27/59 (45%) Frame = +3 Query: 57 KGPDSSRILMGICASSEHLGQQGQDADESIVYVMDEEGGGGASSPRKVASLFSQKGKKG 233 KG D ++ + G+ + + G +G D D+ I + E G G + + +KG G Sbjct: 240 KGDDGTKGITGLKGTKGNSGSKGDDGDKGIQGLKGEFGTKGNVGDKGDTGINGEKGSDG 298 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,554,132 Number of Sequences: 219361 Number of extensions: 861827 Number of successful extensions: 4135 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3746 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4093 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
