>APC_XENLA (P70039) Adenomatous polyposis coli homolog (Protein APC)|
          Length = 2829

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130  WKAYGSSTSFLGEETMTXXXXXXXXXXXXXXXXRQRMQGQFFPGTLSECSNGVKG-WQKV 306
            W+  GSS+S L   + +                 ++ Q   FPG  SECS+  KG W+K+
Sbjct: 2558 WRRTGSSSSILSASSESSEKAKSED---------EKQQVCSFPGPRSECSSSAKGTWRKI 2608

>VAX2_RAT (Q9JLZ9) Ventral anterior homeobox 2|
          Length = 292

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
 Frame = -3

Query: 247 ALASSVLPRLLAQS*PMLIPQIPSLFLLRE--KKLTTRRPSTS---TRHCSVRLSPI--- 92
           A A+S + RLL Q   + +P+ PSL  L      LT     TS    R+ S RL+P+   
Sbjct: 176 AFATSNVLRLLEQGRLLSVPRAPSLLALSPGLPGLTAGHRGTSLGDPRNSSQRLNPMPSA 235

Query: 91  AENSPLLPPV 62
           + +SPL PP+
Sbjct: 236 SASSPLPPPL 245

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +2

Query: 2   SVAGPRG*SATLGLRHGPDSYGRQQWGIFRNGRKPDGAMPRGGGR 136
           +V GP   +ATLG        GR + G +R GR+  GA   GGGR
Sbjct: 551 AVPGPGPAAATLG--------GRGRRGSWRGGRRGGGAGASGGGR 587

>M470_ARATH (P93302) Hypothetical mitochondrial protein AtMg00470 (ORF122a)|
          Length = 122

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 37  GTETRPRLLREAAVGNFPQWAKA*RSNA--AWRWKAYGSSTSFLGEETM 177
           G   R RLL E AVGNFPQ  K   S +  A R   + S TS   +E +
Sbjct: 39  GLRLRLRLLLELAVGNFPQGFKIHLSGSFQAVRLALFSSFTSLRTDELL 87

>VAX2_HUMAN (Q9UIW0) Ventral anterior homeobox 2|
          Length = 290

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = -3

Query: 247 ALASSVLPRLLAQS*PMLIPQIPSLFLLREK--KLTTRRPSTS---TRHCSVRLSPI--A 89
           A A+S + RLL Q   + +P+ PSL  L      L      TS    R+ S RL+P+  A
Sbjct: 176 AFATSNILRLLEQGRLLSVPRAPSLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSA 235

Query: 88  ENSPLLPP 65
             SP LPP
Sbjct: 236 SASPPLPP 243

>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 38  GLRHGPDSYGRQQWGIFRNGRKPDGA-MPRGGGRPTG 145
           G R G  + G Q+ G    G +P G   P+GG RP G
Sbjct: 255 GQRDGQGNRGGQRQGAGAGGPRPQGGPRPQGGSRPQG 291

>TASM_POVMA (P68835) Small T antigen|
          Length = 195

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 329 TSGNYYC*TFCHPLTPLEHSLRVPGKNCPCILCLTAAAGTELAD 198
           T G+ Y   FC    PL   + V   +C CILCL      EL D
Sbjct: 95  TFGDRYYQRFCR--MPLTCLVNVKYSSCSCILCLLRKQHRELKD 136

>TASM_POVM3 (P68834) Small T antigen|
          Length = 195

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 329 TSGNYYC*TFCHPLTPLEHSLRVPGKNCPCILCLTAAAGTELAD 198
           T G+ Y   FC    PL   + V   +C CILCL      EL D
Sbjct: 95  TFGDRYYQRFCR--MPLTCLVNVKYSSCSCILCLLRKQHRELKD 136

>Y4VJ_RHISN (Q53218) Hypothetical 39.2 kDa protein y4vJ|
          Length = 351

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -2

Query: 116 LLRQAFAHCGKF----PTAASRRSLGRVSVPVWLIILSDQLL 3
           L ++ F H G++    PTA S R+L + + P+W+   S + +
Sbjct: 140 LKQKIFTHSGRYMQIPPTAISVRTLQKPTPPIWIATASSKTM 181

>TAMI_POVM3 (P03076) Middle T antigen|
          Length = 440

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 329 TSGNYYC*TFCHPLTPLEHSLRVPGKNCPCILCLTAAAGTELAD 198
           T G+ Y   FC    PL   + V   +C CILCL      EL D
Sbjct: 95  TFGDRYYQRFCR--MPLTCLVNVKYSSCSCILCLLRKQHRELKD 136

>BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11.1) (NY-REN-26|
           antigen)
          Length = 1271

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 59  SYGRQQWGIFRNGRKPDGA 115
           SY RQ+WG  R  + PDGA
Sbjct: 69  SYDRQRWGFRRAAQAPDGA 87

>TAMI_POVMC (P12906) Middle T antigen|
          Length = 421

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 329 TSGNYYC*TFCHPLTPLEHSLRVPGKNCPCILCLTAAAGTELAD 198
           T G+ Y   FC    PL   + V   +C CILCL      EL D
Sbjct: 95  TFGDRYYQRFCR--MPLTCLVNVKYSSCSCILCLLRKQHRELKD 136

>TAMI_POVMA (P03077) Middle T antigen|
          Length = 421

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 329 TSGNYYC*TFCHPLTPLEHSLRVPGKNCPCILCLTAAAGTELAD 198
           T G+ Y   FC    PL   + V   +C CILCL      EL D
Sbjct: 95  TFGDRYYQRFCR--MPLTCLVNVKYSSCSCILCLLRKQHRELKD 136

>VAX2_MOUSE (Q9WTP9) Ventral anterior homeobox 2 (Ventral retina homeodomain|
           protein)
          Length = 292

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
 Frame = -3

Query: 247 ALASSVLPRLLAQS*PMLIPQIPSLFLLRE--KKLTTRRPSTS---TRHCSVRLSPI--- 92
           A A+S + RLL Q   + +P+ PSL  L      L      TS    R+ S RL+P+   
Sbjct: 176 AFATSNVLRLLEQGRLLSVPRAPSLLALTPGLPGLPASHRGTSLVDPRNSSPRLNPMPSA 235

Query: 91  AENSPLLPPV 62
           + +SPL PP+
Sbjct: 236 SASSPLPPPL 245

>ZAN_MOUSE (O88799) Zonadhesin precursor|
          Length = 5376

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -3

Query: 202  PMLIPQIPSLFLLREKKLTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQCG*S 23
            P++ P+     L  +    T  P ++T+HCS +     E  P     G   V  SQCG +
Sbjct: 1552 PLVCPKNSRYSLCAKPCPETCHPISTTQHCSDKCVEGCECDPGFILSGSECVPSSQCGCT 1611

Query: 22   SSRTSY 5
            S +  Y
Sbjct: 1612 SFQGRY 1617

>POL_AVIRE (P03360) Pol polyprotein [Contains: Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)] (Fragment)
          Length = 473

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 162 EKRS*RPVGLPPPRGIAPSGFRPLRK 85
           E R  R +GLPPP G AP    P R+
Sbjct: 304 EDRDRRGLGLPPPSGFAPGTVYPGRE 329

>ICP4_GAHVG (Q02362) Trans-acting transcriptional activator protein ICP4|
           (Immediate-early protein IE175)
          Length = 1415

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = +2

Query: 17  RG*SATLGLRHGPDSYGRQQWGIFRNGRKPD-----GAMPRGGGRPTGR 148
           RG  +  G R GP S GR+     R     D      A  RGGGRP GR
Sbjct: 204 RGRGSNRGGRSGPQSKGRKASPRTRKLEDEDYLPQETANRRGGGRPRGR 252

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2014

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
 Frame = +2

Query: 38   GLRHGPDSYGRQQWGIFRNGRKP-----DGAMPRGGGR 136
            G+  GP    R+QWG      +P      GA PRG GR
Sbjct: 1132 GIWRGPPQEHREQWGHSEAWEEPPSNGIQGAPPRGQGR 1169

>C71A2_SOLME (P37118) Cytochrome P450 71A2 (EC 1.14.-.-) (CYPLXXIA2) (P-450EG4)|
          Length = 505

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 195 LFLRYRHCFFSEKRS*RPVGLPPPRGIAPSG-FRPLRKIPH 76
           +FL   HCFF+  +    + LP PR +   G    L  +PH
Sbjct: 18  IFLLIHHCFFTTSKKQNMLLLPSPRKLPIIGNLHQLGSLPH 58

>Y1468_METJA (Q58863) Hypothetical protein MJ1468|
          Length = 1009

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -1

Query: 261 SWEKLPLHPLSYRGCWHRVSRCLFLRYRHCFFSEKRS*RPVGLPPPRGI 115
           S+EK P H  S  G          L Y H F  +      VG+PPP G+
Sbjct: 476 SFEKSPTHRYSSSG----------LYYPHVFVIDDNGNIEVGIPPPIGV 514

>MYNA_MYTGA (P82103) Myticin-A precursor|
          Length = 96

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 320 NYYC*TFCHPLTPLEHSLRV--PGKNCPCILC 231
           +Y+C  FC   +   +  RV  PGK C C+ C
Sbjct: 27  SYWCGKFCGTASCTHYLCRVLHPGKMCACVHC 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,275,057
Number of Sequences: 219361
Number of extensions: 1132066
Number of successful extensions: 2923
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2918
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)