ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet99f02 |
|---|---|
| Clone Library Name | barley_pub |
>SINA2_ARATH (Q9M2P4) Ubiquitin ligase SINAT2 (EC 6.3.2.-) (Seven in absentia| homolog 2) Length = 308 Score = 73.9 bits (180), Expect = 9e-14 Identities = 40/93 (43%), Positives = 55/93 (59%) Frame = +1 Query: 37 MAPGSSIVSVTEVPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDL 216 MAPG S ++ EV ES+ + ++ + +KP +A + G+ S G+ +L Sbjct: 1 MAPGGS--ALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPG-SAGIGKYGIHSNNGVYEL 57 Query: 217 LECPVCTNSMRPPILQCPNGHTICSSX*HRVDN 315 LECPVCTN M PPI QCPNGHT+CS+ RV N Sbjct: 58 LECPVCTNLMYPPIHQCPNGHTLCSNCKLRVQN 90
>SINA1_ARATH (P93748) Putative ubiquitin ligase SINAT1 (EC 6.3.2.-) (Seven in| absentia homolog 1) Length = 305 Score = 67.8 bits (164), Expect = 7e-12 Identities = 40/93 (43%), Positives = 54/93 (58%) Frame = +1 Query: 37 MAPGSSIVSVTEVPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDL 216 MAPG S ++ E ES+ G+ + +++ +S S + S+ S G+ +L Sbjct: 1 MAPGGS--ALKEALESN--STGVDYEVKMAKVEANSKPTKSGSGSIGK--FHSSNGVYEL 54 Query: 217 LECPVCTNSMRPPILQCPNGHTICSSX*HRVDN 315 LECPVCTN M PPI QCPNGHT+CSS RV N Sbjct: 55 LECPVCTNLMYPPIHQCPNGHTLCSSCKLRVQN 87
>SINA3_ARATH (Q84JL3) Ubiquitin ligase SINAT3 (EC 6.3.2.-) (Seven in absentia| homolog 3) Length = 326 Score = 63.2 bits (152), Expect = 2e-10 Identities = 35/74 (47%), Positives = 47/74 (63%) Frame = +1 Query: 94 DRGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPN 273 DR S+S ++T+ + AAS + L + T +++LLECPVCTNSM PPI QC N Sbjct: 23 DRHSYASVSKHHHTNNNTTNVNAAASGL---LPTTTSVHELLECPVCTNSMYPPIHQCHN 79 Query: 274 GHTICSSX*HRVDN 315 GHT+CS+ RV N Sbjct: 80 GHTLCSTCKARVHN 93
>SINA5_ARATH (Q8S3N1) Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia| homolog 5) Length = 309 Score = 62.0 bits (149), Expect = 4e-10 Identities = 31/58 (53%), Positives = 40/58 (68%) Frame = +1 Query: 142 STSKPSWAASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPNGHTICSSX*HRVDN 315 S++K A++V +S T + +LLECPVCTNSM PPI QC NGHT+CS+ RV N Sbjct: 22 SSTKSQGGATVV---ISPATSVYELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHN 76
>SINA4_ARATH (Q9STN8) Ubiquitin ligase SINAT4 (EC 6.3.2.-) (Seven in absentia| homolog 4) Length = 327 Score = 57.8 bits (138), Expect = 7e-09 Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 4/79 (5%) Frame = +1 Query: 91 GDRGLSESLSSTRLDGDSTSKPSWAASLVNV----GLSSLTGLNDLLECPVCTNSMRPPI 258 G+ S SST+ G + + AA + N+ + T + +LLECPVCT SM PPI Sbjct: 20 GNGHQSYQFSSTKTHGGAAA----AAVVTNIVGPTATAPATSVYELLECPVCTYSMYPPI 75 Query: 259 LQCPNGHTICSSX*HRVDN 315 QC NGHT+CS+ RV N Sbjct: 76 HQCHNGHTLCSTCKVRVHN 94
>SINA_DROWI (Q8I147) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 331 Score = 49.7 bits (117), Expect = 2e-06 Identities = 28/83 (33%), Positives = 38/83 (45%) Frame = +1 Query: 46 GSSIVSVTEVPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLEC 225 G+S V+ + G S S +T S+S S +S L L EC Sbjct: 31 GASGVATANTNTTGSSSTGGSSSAGTTSSANTSSSSSSSLSSAGGGDAGMSADLTSLFEC 90 Query: 226 PVCTNSMRPPILQCPNGHTICSS 294 PVC + + PPILQC +GH +C S Sbjct: 91 PVCFDYVLPPILQCSSGHLVCVS 113
>SINA_DROME (P21461) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 48.9 bits (115), Expect = 3e-06 Identities = 29/94 (30%), Positives = 42/94 (44%) Frame = +1 Query: 13 PNVKEAFTMAPGSSIVSVTEVPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLS 192 P +E A G+ V + G + S+ S+S S + G+S Sbjct: 7 PKRREPTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGG--DAGMS 64 Query: 193 SLTGLNDLLECPVCTNSMRPPILQCPNGHTICSS 294 + L L ECPVC + + PPILQC +GH +C S Sbjct: 65 A--DLTSLFECPVCFDYVLPPILQCSSGHLVCVS 96
>SINA_DROER (P61093) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 48.9 bits (115), Expect = 3e-06 Identities = 29/94 (30%), Positives = 42/94 (44%) Frame = +1 Query: 13 PNVKEAFTMAPGSSIVSVTEVPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLS 192 P +E A G+ V + G + S+ S+S S + G+S Sbjct: 7 PKRREPTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGG--DAGMS 64 Query: 193 SLTGLNDLLECPVCTNSMRPPILQCPNGHTICSS 294 + L L ECPVC + + PPILQC +GH +C S Sbjct: 65 A--DLTSLFECPVCFDYVLPPILQCSSGHLVCVS 96
>SIAH1_BRARE (Q7ZVG6) Ubiquitin ligase Siah1 (EC 6.3.2.-) (Seven in absentia| homolog 1) (Siah-1) Length = 282 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/64 (35%), Positives = 35/64 (54%) Frame = +1 Query: 103 LSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPNGHT 282 +S ++ G S PS ++ +S + L L ECPVC + + PPILQC +GH Sbjct: 1 MSRQTATALPTGTSKCPPSQRVPTLSGTTASNSDLASLFECPVCFDYVLPPILQCQSGHL 60 Query: 283 ICSS 294 +CS+ Sbjct: 61 VCSN 64
>SIA1B_MOUSE (Q06985) Ubiquitin ligase SIAH1B (EC 6.3.2.-) (Seven in absentia| homolog 1b) (Siah1b) (Siah-1b) Length = 282 Score = 47.8 bits (112), Expect = 7e-06 Identities = 23/64 (35%), Positives = 33/64 (51%) Frame = +1 Query: 103 LSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPNGHT 282 +S ++ G S PS + +S L L ECPVC + + PPILQC +GH Sbjct: 1 MSRQAATALSTGTSKCPPSQRVPALTDTTASNNDLASLFECPVCFDYVLPPILQCQSGHL 60 Query: 283 ICSS 294 +CS+ Sbjct: 61 VCSN 64
>SIAH1_RAT (Q920M9) Ubiquitin ligase SIAH1 (EC 6.3.2.-) (Seven in absentia| homolog 1) (Siah-1) (Siah-1a) Length = 282 Score = 47.4 bits (111), Expect = 9e-06 Identities = 23/64 (35%), Positives = 33/64 (51%) Frame = +1 Query: 103 LSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPNGHT 282 +S ++ G S PS + +S L L ECPVC + + PPILQC +GH Sbjct: 1 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL 60 Query: 283 ICSS 294 +CS+ Sbjct: 61 VCSN 64
>SIAH1_HUMAN (Q8IUQ4) Ubiquitin ligase SIAH1 (EC 6.3.2.-) (Seven in absentia| homolog 1) (Siah-1) (Siah-1a) Length = 282 Score = 47.4 bits (111), Expect = 9e-06 Identities = 23/64 (35%), Positives = 33/64 (51%) Frame = +1 Query: 103 LSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPNGHT 282 +S ++ G S PS + +S L L ECPVC + + PPILQC +GH Sbjct: 1 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL 60 Query: 283 ICSS 294 +CS+ Sbjct: 61 VCSN 64
>SIA1A_MOUSE (P61092) Ubiquitin ligase SIAH1A (EC 6.3.2.-) (Seven in absentia| homolog 1a) (Siah1a) (Siah-1a) (mSiah-1a) Length = 282 Score = 47.4 bits (111), Expect = 9e-06 Identities = 23/64 (35%), Positives = 33/64 (51%) Frame = +1 Query: 103 LSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPNGHT 282 +S ++ G S PS + +S L L ECPVC + + PPILQC +GH Sbjct: 1 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL 60 Query: 283 ICSS 294 +CS+ Sbjct: 61 VCSN 64
>SINAL_DROME (Q8T3Y0) Probable ubiquitin ligase sina-like protein CG13030 (EC| 6.3.2.-) Length = 351 Score = 47.0 bits (110), Expect = 1e-05 Identities = 18/27 (66%), Positives = 21/27 (77%) Frame = +1 Query: 214 LLECPVCTNSMRPPILQCPNGHTICSS 294 LLECPVC + PPI+QCP GH ICS+ Sbjct: 103 LLECPVCFGYIMPPIMQCPRGHLICST 129
>SINA_SCHMA (Q86MW9) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| homolog) (SmSINA) Length = 371 Score = 46.6 bits (109), Expect = 2e-05 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Frame = +1 Query: 112 SLSSTRLDGDSTSKPSWAASLV--NVGLSSLTGLNDLLECPVCTNSMRPPILQCPNGHTI 285 S S L G +S +++ N SS L L ECPVC + PPI+QC +GH + Sbjct: 87 STCSMSLPGSMSSASDTVCNILPHNTSDSSSIDLASLFECPVCMDYALPPIMQCQSGHIV 146 Query: 286 CSS 294 C+S Sbjct: 147 CAS 149
>SINA_DROVI (P29304) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 45.8 bits (107), Expect = 3e-05 Identities = 25/65 (38%), Positives = 36/65 (55%) Frame = +1 Query: 100 GLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPNGH 279 G S +S+ S+S +A + G+S+ L L ECPVC + + PPILQC +GH Sbjct: 34 GSSAGNTSSANTSSSSSSSLSSAGGGDAGMSA--DLTSLFECPVCFDYVLPPILQCSSGH 91 Query: 280 TICSS 294 +C S Sbjct: 92 LVCVS 96
>SIAH2_XENLA (Q9I8X5) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Xsiah-2) Length = 313 Score = 43.1 bits (100), Expect = 2e-04 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = +1 Query: 112 SLSSTRLDGDSTSKPS--WAASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPNGHTI 285 SL +T G S P AA++ L L ECPVC + + PPILQC GH + Sbjct: 30 SLPATISGGPGASAPPAPTAAAITGPLSQQHQELTSLFECPVCFDYVLPPILQCQAGHLV 89 Query: 286 CS 291 C+ Sbjct: 90 CN 91
>SIAH2_RAT (Q8R4T2) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) Length = 325 Score = 42.4 bits (98), Expect = 3e-04 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%) Frame = +1 Query: 142 STSKPSWAASLVNVGLSSLTG--------LNDLLECPVCTNSMRPPILQCPNGHTICS 291 S++ P+ AA + G G L L ECPVC + + PPILQC GH +C+ Sbjct: 46 SSAVPAAAAVISGPGAGGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCN 103
>SIAH2_MOUSE (Q06986) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) (mSiah2) Length = 325 Score = 42.0 bits (97), Expect = 4e-04 Identities = 16/29 (55%), Positives = 20/29 (68%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPILQCPNGHTICS 291 L L ECPVC + + PPILQC GH +C+ Sbjct: 75 LTSLFECPVCFDYVLPPILQCQAGHLVCN 103
>SIAH2_BRARE (Q7SYL3) Ubiquitin ligase Siah2 (EC 6.3.2.-) (Seven in absentia| homolog 2-like) (Siah-2) Length = 331 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%) Frame = +1 Query: 166 ASLVNVGLSSLTG----LNDLLECPVCTNSMRPPILQCPNGHTICS 291 A+ V + +++L G L L ECPVC + + PPILQC GH +C+ Sbjct: 66 AAAVALPVAALPGQSPELTALFECPVCFDYVLPPILQCQAGHLVCN 111
>SIAH2_HUMAN (O43255) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) (hSiah2) Length = 324 Score = 42.0 bits (97), Expect = 4e-04 Identities = 16/29 (55%), Positives = 20/29 (68%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPILQCPNGHTICS 291 L L ECPVC + + PPILQC GH +C+ Sbjct: 74 LTSLFECPVCFDYVLPPILQCQAGHLVCN 102
>SIA1_CAEEL (Q965X6) Ubiquitin ligase sia-1 (EC 6.3.2.-) (Seven in absentia| homolog 1) Length = 339 Score = 40.8 bits (94), Expect = 9e-04 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = +1 Query: 214 LLECPVCTNSMRPPILQCPNGHTICSS 294 + ECPVC M PP +QC +GH +CS+ Sbjct: 87 VFECPVCLEYMLPPYMQCSSGHLVCSN 113
>TRI32_MOUSE (Q8CH72) Tripartite motif protein 32 (EC 6.3.2.-)| Length = 655 Score = 36.2 bits (82), Expect = 0.021 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 5/37 (13%) Frame = +1 Query: 193 SLTGLNDLLECPVCTNS-----MRPPILQCPNGHTIC 288 +L L ++LECP+C S +RP +L C GHTIC Sbjct: 11 NLDALREVLECPICMESFTEEQLRPKLLHC--GHTIC 45
>TRI32_HUMAN (Q13049) Tripartite motif protein 32 (EC 6.3.2.-) (Zinc-finger| protein HT2A) (72 kDa Tat-interacting protein) Length = 653 Score = 36.2 bits (82), Expect = 0.021 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 5/37 (13%) Frame = +1 Query: 193 SLTGLNDLLECPVCTNS-----MRPPILQCPNGHTIC 288 +L L ++LECP+C S +RP +L C GHTIC Sbjct: 10 NLDALREVLECPICMESFTEEQLRPKLLHC--GHTIC 44
>RAD18_CANGA (Q6FPI4) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 411 Score = 34.7 bits (78), Expect = 0.062 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = +1 Query: 163 AASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPNGHTICS 291 AA + L L+DLL C +C + ++ P+L P GHT CS Sbjct: 7 AADFKKSKVPQLQELDDLLRCHICKDFLKNPVL-TPCGHTFCS 48
>RAD18_YEAST (P10862) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) (Radiation sensitivity protein 18) Length = 487 Score = 34.7 bits (78), Expect = 0.062 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +1 Query: 163 AASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPNGHTICS 291 A+ + SL L+ LL C +C + ++ P+L P GHT CS Sbjct: 8 ASDFTTTSIPSLYQLDTLLRCHICKDFLKVPVL-TPCGHTFCS 49
>RAD18_ASHGO (Q75EN0) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 443 Score = 32.3 bits (72), Expect = 0.31 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = +1 Query: 187 LSSLTGLNDLLECPVCTNSMRPPIL-QCPNGHTICS 291 + L L+ LL C +C + ++ P+L QC GHT CS Sbjct: 20 IPELADLDSLLRCHICKDMLQTPVLTQC--GHTFCS 53
>TRI50_HUMAN (Q86XT4) Tripartite motif protein 50| Length = 487 Score = 31.6 bits (70), Expect = 0.52 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +1 Query: 193 SLTGLNDLLECPVCTNSMRPPI-LQCPNGHTIC 288 SL L D L+CP+C + P+ LQC GH+ C Sbjct: 6 SLLELEDWLQCPICLEVFKEPLMLQC--GHSYC 36
>ISPH_BIFLO (Q8G4L8) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 352 Score = 30.8 bits (68), Expect = 0.89 Identities = 20/60 (33%), Positives = 30/60 (50%) Frame = +1 Query: 40 APGSSIVSVTEVPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLL 219 A S+ V + EV + G+RG + R+D S P+W L +VG+SS + D L Sbjct: 260 ANSSNSVRLMEVAQEGLGERG-----KAYRVDDASELDPAWFEGLESVGISSGASVPDEL 314
>TRI50_PIG (Q865W2) Tripartite motif protein 50| Length = 486 Score = 30.8 bits (68), Expect = 0.89 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +1 Query: 193 SLTGLNDLLECPVCTNSMRPPI-LQCPNGHTIC 288 S+ L D L+CPVC + P+ LQC GH+ C Sbjct: 6 SVPELEDRLQCPVCLEVFKEPLMLQC--GHSYC 36
>TRI50_RAT (Q810I1) Tripartite motif protein 50| Length = 483 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPI-LQCPNGHTICSSX*HRVDNH 318 L D L+CP+C + P+ LQC GH+ C + + H Sbjct: 10 LQDQLQCPICLEVFKEPLMLQC--GHSYCKNCLDSLSEH 46
>TRI50_MOUSE (Q810I2) Tripartite motif protein 50| Length = 483 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPI-LQCPNGHTICSSX*HRVDNH 318 L D L+CP+C + P+ LQC GH+ C + H Sbjct: 10 LQDQLQCPICLEVFKEPLMLQC--GHSYCKDCLDNLSQH 46
>PHYA_ASPOR (Q9C1T1) 3-phytase A precursor (EC 3.1.3.8)| (Myo-inositol-hexaphosphate 3-phosphohydrolase A) (3 phytase A) (Myo-inositol hexakisphosphate phosphohydrolase A) Length = 466 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 136 GDSTSKPSWAASLVNVGLSSLTGLNDLLECPVCT 237 GDS SK A +VNV ++ G N+ L+ +CT Sbjct: 182 GDSKSKRGQPAPIVNVVITETEGFNNTLDHSLCT 215
>RPOB_PSEAK (Q3ZJ93) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 2178 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +1 Query: 25 EAFTMAPGSSIVSVTEVPESDCGDRGLSESLSSTRLDGD 141 E F + P SS+ + ++ S G +GL++SLS DG+ Sbjct: 1449 ENFKVPPQSSLTARDKILRSTIGTKGLNDSLSMKSTDGE 1487
>TRIM1_HUMAN (Q9UJV3) Midline-2 (Midline defect 2) (Tripartite motif protein 1)| (Midin-2) (RING finger protein 60) Length = 715 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPILQCPNGHTICSSX*HRV 309 L L CP+C P+L P H++C S HR+ Sbjct: 4 LESELTCPICLELFEDPLL-LPCAHSLCFSCAHRI 37
>TRIM1_MOUSE (Q9QUS6) Midline-2 (Midline defect 2) (Tripartite motif protein 1)| Length = 685 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPILQCPNGHTICSSX*HRV 309 L L CP+C P+L P H++C S HR+ Sbjct: 4 LESELTCPICLELFEDPLL-LPCAHSLCFSCAHRI 37
>TRI18_MUSSP (P82457) Midline-1 (Tripartite motif protein 18)| Length = 667 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPILQCPNGHTICSSX*HRV 309 L L CP+C + P+L P H++C + HR+ Sbjct: 4 LESELTCPICLELLEDPLL-LPCAHSLCFNCAHRI 37
>BARD1_HUMAN (Q99728) BRCA1-associated RING domain protein 1 (BARD-1)| Length = 777 Score = 28.9 bits (63), Expect = 3.4 Identities = 20/66 (30%), Positives = 31/66 (46%) Frame = +1 Query: 97 RGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLECPVCTNSMRPPILQCPNG 276 R +E S+ ++ D + +WA S ++L L LL C CTN +R P+ Sbjct: 15 RSGNEPRSAPAMEPDG--RGAWAHSR-----AALDRLEKLLRCSRCTNILREPVCLGGCE 67 Query: 277 HTICSS 294 H CS+ Sbjct: 68 HIFCSN 73
>NCOA2_XENLA (Q9W705) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional| intermediary factor 2) (xTIF2) Length = 1516 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = +1 Query: 34 TMAPGSSIVSVTEVPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGL 207 T PGS ++ E+ + D + LS+ S TR DG+S K + L+ + + TGL Sbjct: 785 TDQPGSDFDNLDEILD-DLQNSQLSQLFSDTRHDGNSADKQAIMNDLMQLAGENSTGL 841
>Y021_NPVAC (P41426) Hypothetical 36.6 kDa protein in EGT-IAP1 intergenic| region (ORF 5) Length = 319 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +1 Query: 49 SSIVSVTEVPESDCGDRGLSESLSSTRLDGDSTSKPS 159 SS+V+VT P + +SE+LSS D +S+PS Sbjct: 268 SSVVAVTHPPSTTSTTTSVSETLSSFIAPSDLSSQPS 304
>RC3H1_HUMAN (Q5TC82) Roquin (RING finger and C3H zinc finger protein 1)| Length = 1133 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 5/31 (16%) Frame = +1 Query: 211 DLLECPVCT----NSMRPPI-LQCPNGHTIC 288 D L CP+CT ++R PI L C GHT+C Sbjct: 10 DFLSCPICTQTFDETIRKPISLGC--GHTVC 38
>TRI74_HUMAN (Q86UV6) Tripartite motif protein 74 (Tripartite motif protein 50C)| Length = 250 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +1 Query: 193 SLTGLNDLLECPVCTNSMRPPI-LQCPNGHTIC 288 SL L D L+CP+C + + LQC GH+ C Sbjct: 6 SLLELEDWLQCPICLEVFKESLMLQC--GHSYC 36
>TRI73_HUMAN (Q86UV7) Tripartite motif protein 73 (Tripartite motif protein 50B)| Length = 250 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +1 Query: 193 SLTGLNDLLECPVCTNSMRPPI-LQCPNGHTIC 288 SL L D L+CP+C + + LQC GH+ C Sbjct: 6 SLLELEDRLQCPICLEVFKESLMLQC--GHSYC 36
>RC3H1_XENLA (Q6NUC6) Roquin (RING finger and C3H zinc finger protein 1)| Length = 1114 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 5/31 (16%) Frame = +1 Query: 211 DLLECPVCT----NSMRPPI-LQCPNGHTIC 288 D L CP+CT ++R PI L C GHT+C Sbjct: 10 DFLSCPICTQTFDETIRKPISLGC--GHTVC 38
>RC3H1_MOUSE (Q4VGL6) Roquin (RING finger and C3H zinc finger protein 1)| (Sanroque protein) Length = 1130 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 5/31 (16%) Frame = +1 Query: 211 DLLECPVCT----NSMRPPI-LQCPNGHTIC 288 D L CP+CT ++R PI L C GHT+C Sbjct: 10 DFLSCPICTQTFDETIRKPISLGC--GHTVC 38
>CLAP2_HUMAN (O75122) CLIP-associating protein 2 (Cytoplasmic linker-associated| protein 2) Length = 1294 Score = 28.5 bits (62), Expect = 4.4 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +1 Query: 61 SVTEVPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLE 222 SV +P+SD ESL+ ST+ PS A V+ G S + L L+ Sbjct: 313 SVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSAGSSKASSLPGSLQ 366
>Y022_NPVAC (P41427) Hypothetical 43.8 kDa protein in EGT-IAP1 intergenic| region (ORF 8/6) Length = 382 Score = 28.1 bits (61), Expect = 5.8 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 12/72 (16%) Frame = +1 Query: 49 SSIVSVTEVPESDCGDRGLSE----------SLSSTRLDG--DSTSKPSWAASLVNVGLS 192 +S+ V E E DCGD ++ S+ ++ +DG ST+ + VN+ S Sbjct: 259 TSVRPVFETGECDCGDEAVTRVTHIVPGDRTSMCASIIDGLDKSTASYRYRVECVNLYTS 318 Query: 193 SLTGLNDLLECP 228 L N+ L CP Sbjct: 319 ILNYSNNKLLCP 330
>TRI18_RAT (P82458) Midline-1 (Tripartite motif protein 18)| Length = 667 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPILQCPNGHTICSSX*HRV 309 L L CP+C P+L P H++C + HR+ Sbjct: 4 LESELTCPICLELFEDPLL-LPCAHSLCFNCAHRI 37
>TRI18_HUMAN (O15344) Midline-1 (EC 6.3.2.-) (Tripartite motif protein 18)| (Putative transcription factor XPRF) (Midin) (RING finger protein 59) (Midline 1 RING finger protein) Length = 667 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPILQCPNGHTICSSX*HRV 309 L L CP+C P+L P H++C + HR+ Sbjct: 4 LESELTCPICLELFEDPLL-LPCAHSLCFNCAHRI 37
>EFC2_HUMAN (P60608) HERV-F(c)2_7q36.2 provirus ancestral Env polyprotein| (Envelope polyprotein) (Fc2deltaenv) [Includes: Surface protein (SU); Truncated transmembrane protein (TM)] Length = 527 Score = 28.1 bits (61), Expect = 5.8 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Frame = +1 Query: 133 DGDSTSKPSWAASLVNVGLSSL--TGLNDLLECPVCTNSMRPPI----LQCPNGHTICSS 294 D +S+ SW +L++ G L TG+ +L C +C RPP+ L P +TI SS Sbjct: 249 DQAKSSRFSWL-TLISEGAQLLQSTGVQNLSHCFLCAALRRPPLVAVPLPTPFNYTINSS 307
>TRI18_MOUSE (O70583) Midline-1 (EC 6.3.2.-) (Tripartite motif protein 18)| (Midin) Length = 680 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPILQCPNGHTICSSX*HRV 309 L L CP+C P+L P H++C + HR+ Sbjct: 4 LESELTCPICLELFEDPLL-LPCAHSLCFNCAHRI 37
>CLAP2_RAT (Q99JD4) CLIP-associating protein 2 (Cytoplasmic linker-associated| protein 2) Length = 1286 Score = 28.1 bits (61), Expect = 5.8 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +1 Query: 61 SVTEVPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLE 222 SV +P+SD ESL+ ST+ PS A V+VG S + L L+ Sbjct: 319 SVASLPQSDRSSSSSQESLNRPFSSKWSTANPSAVAGRVSVGGSKASPLPGSLQ 372
>CLAP2_MOUSE (Q8BRT1) CLIP-associating protein 2 (Cytoplasmic linker-associated| protein 2) Length = 1286 Score = 28.1 bits (61), Expect = 5.8 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +1 Query: 61 SVTEVPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLE 222 SV +P+SD ESL+ ST+ PS A V+VG S L L+ Sbjct: 319 SVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSVGGSKANPLPGSLQ 372
>CING_XENLA (Q9PTD7) Cingulin| Length = 1360 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = +1 Query: 43 PGSSIVSVTEVPESDCGDRGLSESLSSTRLDGDSTSKP 156 P SI S +E+PE+ G RG S S D KP Sbjct: 94 PSRSISSESELPENPYGSRGYRPSSSHYSSASDEEQKP 131
>INHA_HUMAN (P05111) Inhibin alpha chain precursor| Length = 366 Score = 27.3 bits (59), Expect = 9.9 Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 3/46 (6%) Frame = +1 Query: 154 PSWAA-SLVNVGLSSLTG--LNDLLECPVCTNSMRPPILQCPNGHT 282 P WA L LS LT L LL CP+CT S RP HT Sbjct: 174 PHWAVLHLATSALSLLTHPVLVLLLRCPLCTCSARPEATPFLVAHT 219
>TRIM9_MOUSE (Q8C7M3) Tripartite motif protein 9| Length = 817 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPILQCPNGHTICSS 294 + + L+CPVC + R PI+ P H +C + Sbjct: 4 MEEELKCPVCGSFYREPII-LPCSHNLCQA 32
>TRIM9_RAT (Q91ZY8) Tripartite motif protein 9 (SNAP-25-interacting RING| finger protein) Length = 710 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPILQCPNGHTICSS 294 + + L+CPVC + R PI+ P H +C + Sbjct: 4 MEEELKCPVCGSFYREPII-LPCSHNLCQA 32
>TRIM9_HUMAN (Q9C026) Tripartite motif protein 9 (RING finger protein 91)| Length = 710 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +1 Query: 205 LNDLLECPVCTNSMRPPILQCPNGHTICSS 294 + + L+CPVC + R PI+ P H +C + Sbjct: 4 MEEELKCPVCGSFYREPII-LPCSHNLCQA 32
>TRI12_MOUSE (Q99PQ1) Tripartite motif protein 12| Length = 284 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 196 LTGLNDLLECPVCTNSMRPPILQCPNGHTIC 288 + L + + CPVC N M P+ GHT C Sbjct: 6 MKNLKEEVTCPVCLNLMVKPV-SADCGHTFC 35
>PANE_HALSA (Q9HRF0) Putative 2-dehydropantoate 2-reductase (EC 1.1.1.169)| (Ketopantoate reductase) (KPA reductase) (KPR) Length = 303 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%) Frame = +1 Query: 142 STSKPSWAASLVNVGLSSLTGLND-----LLECP 228 S + W LVNVG+++ T L D L+ECP Sbjct: 177 SPQRAVWEKVLVNVGINAATALADVDNGALVECP 210
>NELL2_RAT (Q62918) Protein kinase C-binding protein NELL2 precursor (NEL-like| protein 2) Length = 816 Score = 27.3 bits (59), Expect = 9.9 Identities = 18/73 (24%), Positives = 31/73 (42%) Frame = +1 Query: 73 VPESDCGDRGLSESLSSTRLDGDSTSKPSWAASLVNVGLSSLTGLNDLLECPVCTNSMRP 252 +PE++C R +++ + + D T L + + TG + + CT Sbjct: 746 LPENECCPRCVTDPCQADTIRNDITK-----TCLDEMNVVRFTGSSWIKHGTECT----- 795 Query: 253 PILQCPNGHTICS 291 + QC NGH CS Sbjct: 796 -LCQCKNGHVCCS 807 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,791,861 Number of Sequences: 219361 Number of extensions: 768555 Number of successful extensions: 2138 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 2071 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2138 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
