ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet99f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507434.1| PREDICTED Oryza sativa (japonica cultivar-group... 145 1e-31
2ref|XM_463983.1| Oryza sativa (japonica cultivar-group), mRNA 145 1e-31
3ref|XM_506704.2| PREDICTED Oryza sativa (japonica cultivar-group... 145 1e-31
4dbj|AK119901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
5dbj|AK111795.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
6dbj|AK104468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
8dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 111 1e-21
9gb|AY108731.1| Zea mays PCO091740 mRNA sequence 111 1e-21
10ref|XM_415109.1| PREDICTED: Gallus gallus similar to 1-alpha dyn... 42 1.1
11gb|AC026233.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 4.2
12gb|AC026232.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 4.2
13emb|CR956392.5| M.truncatula DNA sequence from clone MTH2-52P12 ... 40 4.2
14gb|AC125199.3| Mus musculus BAC clone RP23-261K7 from chromosome... 40 4.2
15gb|AC004001.1| Homo sapiens BAC clone CTB-83J23 from 7, complete... 40 4.2
16gb|AY844818.1| Hyla colymba seventh in absentia gene, partial cds 40 4.2
17gb|AY844784.1| Edalorhina perezi seventh in absentia gene, parti... 40 4.2
18gb|AC147428.6| Medicago truncatula clone mth2-34i10, complete se... 40 4.2
19gb|AY595415.1| Glycine max chalcone isomerase 2 mRNA, complete cds 40 4.2
20gb|AC004264.1|AC004264 Homo sapiens PAC clone RP1-102K2 from 22q... 40 4.2
21gb|AC113180.5| Mus musculus chromosome 16, clone RP23-366B13, co... 40 4.2
22emb|AL929318.11| Mouse DNA sequence from clone RP23-46P4 on chro... 40 4.2
23emb|CT030180.3| M.truncatula DNA sequence from clone MTH2-177C12... 40 4.2
24emb|AL607090.12| Mouse DNA sequence from clone RP23-273I17 on ch... 40 4.2 
>ref|XM_507434.1| PREDICTED Oryza sativa (japonica cultivar-group), P0576F08.10 mRNA
          Length = 1378

 Score =  145 bits (73), Expect = 1e-31
 Identities = 176/210 (83%), Gaps = 3/210 (1%)
 Strand = Plus / Plus

                                                                       
Query: 99  tgggctctctgagtcactcagtagtactaggcttgatggagattctacaagtaagccctc 158
           ||||||||||||| |||||| | | | |||||||||||||||||||||| | ||||||| 
Sbjct: 269 tgggctctctgaggcactcactggcattaggcttgatggagattctacatgcaagccct- 327

                                                                       
Query: 159 ctgggctgcgtcacttgtcaatgttggtttgtcatcattgactggcttgaatgatttgct 218
             || || | ||||||||||  ||||   | |||||  |||| |||||||||||||||||
Sbjct: 328 --ggtctacatcacttgtcacagttgagctatcatcgctgacgggcttgaatgatttgct 385

                                                                       
Query: 219 cgagtgtccggtgtgtacaaactcaatgcggccacctatacttcagtgtccaaatggcca 278
           ||||||||| || || |||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 386 cgagtgtccagtctgcacaaactcaatgcgcccacctatactgcagtgcccaaatggtca 445

                                         
Query: 279 cacaatttgctccagctgntagcatagggt 308
           |||||| ||||| | |||  ||||||||||
Sbjct: 446 cacaatatgctctaactgcaagcatagggt 475



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                    
Query: 5   tagtgcttcccaatgtgaaagaagctttcacaatggccccaggaagcagcattgtga 61
           ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 181 tagtgtttcccaatgtgaaagaagcttttgcaatggccccaggaagcagcattgtga 237
to top
>ref|XM_463983.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1312

 Score =  145 bits (73), Expect = 1e-31
 Identities = 176/210 (83%), Gaps = 3/210 (1%)
 Strand = Plus / Plus

                                                                       
Query: 99  tgggctctctgagtcactcagtagtactaggcttgatggagattctacaagtaagccctc 158
           ||||||||||||| |||||| | | | |||||||||||||||||||||| | ||||||| 
Sbjct: 196 tgggctctctgaggcactcactggcattaggcttgatggagattctacatgcaagccct- 254

                                                                       
Query: 159 ctgggctgcgtcacttgtcaatgttggtttgtcatcattgactggcttgaatgatttgct 218
             || || | ||||||||||  ||||   | |||||  |||| |||||||||||||||||
Sbjct: 255 --ggtctacatcacttgtcacagttgagctatcatcgctgacgggcttgaatgatttgct 312

                                                                       
Query: 219 cgagtgtccggtgtgtacaaactcaatgcggccacctatacttcagtgtccaaatggcca 278
           ||||||||| || || |||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 313 cgagtgtccagtctgcacaaactcaatgcgcccacctatactgcagtgcccaaatggtca 372

                                         
Query: 279 cacaatttgctccagctgntagcatagggt 308
           |||||| ||||| | |||  ||||||||||
Sbjct: 373 cacaatatgctctaactgcaagcatagggt 402



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                    
Query: 5   tagtgcttcccaatgtgaaagaagctttcacaatggccccaggaagcagcattgtga 61
           ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 108 tagtgtttcccaatgtgaaagaagcttttgcaatggccccaggaagcagcattgtga 164
to top
>ref|XM_506704.2| PREDICTED Oryza sativa (japonica cultivar-group), P0576F08.10 mRNA
          Length = 1338

 Score =  145 bits (73), Expect = 1e-31
 Identities = 176/210 (83%), Gaps = 3/210 (1%)
 Strand = Plus / Plus

                                                                       
Query: 99  tgggctctctgagtcactcagtagtactaggcttgatggagattctacaagtaagccctc 158
           ||||||||||||| |||||| | | | |||||||||||||||||||||| | ||||||| 
Sbjct: 196 tgggctctctgaggcactcactggcattaggcttgatggagattctacatgcaagccct- 254

                                                                       
Query: 159 ctgggctgcgtcacttgtcaatgttggtttgtcatcattgactggcttgaatgatttgct 218
             || || | ||||||||||  ||||   | |||||  |||| |||||||||||||||||
Sbjct: 255 --ggtctacatcacttgtcacagttgagctatcatcgctgacgggcttgaatgatttgct 312

                                                                       
Query: 219 cgagtgtccggtgtgtacaaactcaatgcggccacctatacttcagtgtccaaatggcca 278
           ||||||||| || || |||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 313 cgagtgtccagtctgcacaaactcaatgcgcccacctatactgcagtgcccaaatggtca 372

                                         
Query: 279 cacaatttgctccagctgntagcatagggt 308
           |||||| ||||| | |||  ||||||||||
Sbjct: 373 cacaatatgctctaactgcaagcatagggt 402



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                    
Query: 5   tagtgcttcccaatgtgaaagaagctttcacaatggccccaggaagcagcattgtga 61
           ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 108 tagtgtttcccaatgtgaaagaagcttttgcaatggccccaggaagcagcattgtga 164
to top
>dbj|AK119901.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D02, full
           insert sequence
          Length = 1359

 Score =  145 bits (73), Expect = 1e-31
 Identities = 176/210 (83%), Gaps = 3/210 (1%)
 Strand = Plus / Plus

                                                                       
Query: 99  tgggctctctgagtcactcagtagtactaggcttgatggagattctacaagtaagccctc 158
           ||||||||||||| |||||| | | | |||||||||||||||||||||| | ||||||| 
Sbjct: 196 tgggctctctgaggcactcactggcattaggcttgatggagattctacatgcaagccct- 254

                                                                       
Query: 159 ctgggctgcgtcacttgtcaatgttggtttgtcatcattgactggcttgaatgatttgct 218
             || || | ||||||||||  ||||   | |||||  |||| |||||||||||||||||
Sbjct: 255 --ggtctacatcacttgtcacagttgagctatcatcgctgacgggcttgaatgatttgct 312

                                                                       
Query: 219 cgagtgtccggtgtgtacaaactcaatgcggccacctatacttcagtgtccaaatggcca 278
           ||||||||| || || |||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 313 cgagtgtccagtctgcacaaactcaatgcgcccacctatactgcagtgcccaaatggtca 372

                                         
Query: 279 cacaatttgctccagctgntagcatagggt 308
           |||||| ||||| | |||  ||||||||||
Sbjct: 373 cacaatatgctctaactgcaagcatagggt 402



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                    
Query: 5   tagtgcttcccaatgtgaaagaagctttcacaatggccccaggaagcagcattgtga 61
           ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 108 tagtgtttcccaatgtgaaagaagcttttgcaatggccccaggaagcagcattgtga 164
to top
>dbj|AK111795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K22, full
           insert sequence
          Length = 1378

 Score =  145 bits (73), Expect = 1e-31
 Identities = 176/210 (83%), Gaps = 3/210 (1%)
 Strand = Plus / Plus

                                                                       
Query: 99  tgggctctctgagtcactcagtagtactaggcttgatggagattctacaagtaagccctc 158
           ||||||||||||| |||||| | | | |||||||||||||||||||||| | ||||||| 
Sbjct: 269 tgggctctctgaggcactcactggcattaggcttgatggagattctacatgcaagccct- 327

                                                                       
Query: 159 ctgggctgcgtcacttgtcaatgttggtttgtcatcattgactggcttgaatgatttgct 218
             || || | ||||||||||  ||||   | |||||  |||| |||||||||||||||||
Sbjct: 328 --ggtctacatcacttgtcacagttgagctatcatcgctgacgggcttgaatgatttgct 385

                                                                       
Query: 219 cgagtgtccggtgtgtacaaactcaatgcggccacctatacttcagtgtccaaatggcca 278
           ||||||||| || || |||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 386 cgagtgtccagtctgcacaaactcaatgcgcccacctatactgcagtgcccaaatggtca 445

                                         
Query: 279 cacaatttgctccagctgntagcatagggt 308
           |||||| ||||| | |||  ||||||||||
Sbjct: 446 cacaatatgctctaactgcaagcatagggt 475



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                    
Query: 5   tagtgcttcccaatgtgaaagaagctttcacaatggccccaggaagcagcattgtga 61
           ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 181 tagtgtttcccaatgtgaaagaagcttttgcaatggccccaggaagcagcattgtga 237
to top
>dbj|AK104468.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D04, full
           insert sequence
          Length = 1312

 Score =  145 bits (73), Expect = 1e-31
 Identities = 176/210 (83%), Gaps = 3/210 (1%)
 Strand = Plus / Plus

                                                                       
Query: 99  tgggctctctgagtcactcagtagtactaggcttgatggagattctacaagtaagccctc 158
           ||||||||||||| |||||| | | | |||||||||||||||||||||| | ||||||| 
Sbjct: 196 tgggctctctgaggcactcactggcattaggcttgatggagattctacatgcaagccct- 254

                                                                       
Query: 159 ctgggctgcgtcacttgtcaatgttggtttgtcatcattgactggcttgaatgatttgct 218
             || || | ||||||||||  ||||   | |||||  |||| |||||||||||||||||
Sbjct: 255 --ggtctacatcacttgtcacagttgagctatcatcgctgacgggcttgaatgatttgct 312

                                                                       
Query: 219 cgagtgtccggtgtgtacaaactcaatgcggccacctatacttcagtgtccaaatggcca 278
           ||||||||| || || |||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 313 cgagtgtccagtctgcacaaactcaatgcgcccacctatactgcagtgcccaaatggtca 372

                                         
Query: 279 cacaatttgctccagctgntagcatagggt 308
           |||||| ||||| | |||  ||||||||||
Sbjct: 373 cacaatatgctctaactgcaagcatagggt 402



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                    
Query: 5   tagtgcttcccaatgtgaaagaagctttcacaatggccccaggaagcagcattgtga 61
           ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 108 tagtgtttcccaatgtgaaagaagcttttgcaatggccccaggaagcagcattgtga 164
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  111 bits (56), Expect = 1e-21
 Identities = 136/162 (83%), Gaps = 3/162 (1%)
 Strand = Plus / Minus

                                                                           
Query: 99      tgggctctctgagtcactcagtagtactaggcttgatggagattctacaagtaagccctc 158
               ||||||||||||| |||||| | | | |||||||||||||||||||||| | ||||||| 
Sbjct: 1483632 tgggctctctgaggcactcactggcattaggcttgatggagattctacatgcaagccct- 1483574

                                                                           
Query: 159     ctgggctgcgtcacttgtcaatgttggtttgtcatcattgactggcttgaatgatttgct 218
                 || || | ||||||||||  ||||   | |||||  |||| |||||||||||||||||
Sbjct: 1483573 --ggtctacatcacttgtcacagttgagctatcatcgctgacgggcttgaatgatttgct 1483516

                                                         
Query: 219     cgagtgtccggtgtgtacaaactcaatgcggccacctatact 260
               ||||||||| || || |||||||||||||| |||||||||||
Sbjct: 1483515 cgagtgtccagtctgcacaaactcaatgcgcccacctatact 1483474



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 54/57 (94%)
 Strand = Plus / Minus

                                                                        
Query: 5       tagtgcttcccaatgtgaaagaagctttcacaatggccccaggaagcagcattgtga 61
               ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 1483720 tagtgtttcccaatgtgaaagaagcttttgcaatggccccaggaagcagcattgtga 1483664
to top
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score =  111 bits (56), Expect = 1e-21
 Identities = 136/162 (83%), Gaps = 3/162 (1%)
 Strand = Plus / Minus

                                                                         
Query: 99    tgggctctctgagtcactcagtagtactaggcttgatggagattctacaagtaagccctc 158
             ||||||||||||| |||||| | | | |||||||||||||||||||||| | ||||||| 
Sbjct: 47053 tgggctctctgaggcactcactggcattaggcttgatggagattctacatgcaagccct- 46995

                                                                         
Query: 159   ctgggctgcgtcacttgtcaatgttggtttgtcatcattgactggcttgaatgatttgct 218
               || || | ||||||||||  ||||   | |||||  |||| |||||||||||||||||
Sbjct: 46994 --ggtctacatcacttgtcacagttgagctatcatcgctgacgggcttgaatgatttgct 46937

                                                       
Query: 219   cgagtgtccggtgtgtacaaactcaatgcggccacctatact 260
             ||||||||| || || |||||||||||||| |||||||||||
Sbjct: 46936 cgagtgtccagtctgcacaaactcaatgcgcccacctatact 46895



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 54/57 (94%)
 Strand = Plus / Minus

                                                                      
Query: 5     tagtgcttcccaatgtgaaagaagctttcacaatggccccaggaagcagcattgtga 61
             ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 47141 tagtgtttcccaatgtgaaagaagcttttgcaatggccccaggaagcagcattgtga 47085
to top
>gb|AY108731.1| Zea mays PCO091740 mRNA sequence
          Length = 1475

 Score =  111 bits (56), Expect = 1e-21
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                       
Query: 201 tggcttgaatgatttgctcgagtgtccggtgtgtacaaactcaatgcggccacctatact 260
           ||||||||||||||||||||| || || |||||||| ||||| ||||| |||||||||||
Sbjct: 393 tggcttgaatgatttgctcgaatgcccagtgtgtaccaactcgatgcgcccacctatact 452

                                                                      
Query: 261 tcagtgtccaaatggccacacaatttgctccagctgntagcatagggtagacaaccatt 319
            ||||| |||||||||||||| || ||||| || ||  |||| |||||||| |||||||
Sbjct: 453 ccagtgcccaaatggccacacgatctgctctagttgcaagcacagggtagagaaccatt 511



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 34  acaatggccccaggaagcagcattgtga 61
           |||||||| || ||||||||||||||||
Sbjct: 226 acaatggcaccgggaagcagcattgtga 253
to top
>ref|XM_415109.1| PREDICTED: Gallus gallus similar to 1-alpha dynein heavy chain
            (LOC416818), mRNA
          Length = 12600

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 7    gtgcttcccaatgtgaaagaa 27
            |||||||||||||||||||||
Sbjct: 2551 gtgcttcccaatgtgaaagaa 2571
to top
>gb|AC026233.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-407F12, complete
             sequence
          Length = 130034

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    gactgaagttcctgagtcag 85
             ||||||||||||||||||||
Sbjct: 21334 gactgaagttcctgagtcag 21353
to top
>gb|AC026232.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-396K2, complete
             sequence
          Length = 74340

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    gactgaagttcctgagtcag 85
             ||||||||||||||||||||
Sbjct: 71810 gactgaagttcctgagtcag 71829
to top
>emb|CR956392.5| M.truncatula DNA sequence from clone MTH2-52P12 on chromosome 3,
             complete sequence
          Length = 115163

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   aatgttggtttgtcatcatt 197
             ||||||||||||||||||||
Sbjct: 28341 aatgttggtttgtcatcatt 28360
to top
>gb|AC125199.3| Mus musculus BAC clone RP23-261K7 from chromosome 16, complete
            sequence
          Length = 226724

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   ccaggaagcagcattgtgag 62
            ||||||||||||||||||||
Sbjct: 8983 ccaggaagcagcattgtgag 8964
to top
>gb|AC004001.1| Homo sapiens BAC clone CTB-83J23 from 7, complete sequence
          Length = 95367

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    aggaagcagcattgtgagtg 64
             ||||||||||||||||||||
Sbjct: 14440 aggaagcagcattgtgagtg 14421
to top
>gb|AY844818.1| Hyla colymba seventh in absentia gene, partial cds
          Length = 397

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 gccacctatacttcagtgtc 268
           ||||||||||||||||||||
Sbjct: 7   gccacctatacttcagtgtc 26
to top
>gb|AY844784.1| Edalorhina perezi seventh in absentia gene, partial cds
          Length = 397

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 gccacctatacttcagtgtc 268
           ||||||||||||||||||||
Sbjct: 7   gccacctatacttcagtgtc 26
to top
>gb|AC147428.6| Medicago truncatula clone mth2-34i10, complete sequence
          Length = 112873

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   aatgttggtttgtcatcatt 197
             ||||||||||||||||||||
Sbjct: 15310 aatgttggtttgtcatcatt 15291
to top
>gb|AY595415.1| Glycine max chalcone isomerase 2 mRNA, complete cds
          Length = 902

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tccaaatggccacacaattt 286
           ||||||||||||||||||||
Sbjct: 363 tccaaatggccacacaattt 344
to top
>gb|AC004264.1|AC004264 Homo sapiens PAC clone RP1-102K2 from 22q12.1-qter, complete sequence
          Length = 47188

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 37    atggccccaggaagcagcattgtg 60
             ||||||||||||| ||||||||||
Sbjct: 33282 atggccccaggaaacagcattgtg 33259
to top
>gb|AC113180.5| Mus musculus chromosome 16, clone RP23-366B13, complete sequence
          Length = 215198

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     ccaggaagcagcattgtgag 62
              ||||||||||||||||||||
Sbjct: 206091 ccaggaagcagcattgtgag 206072
to top
>emb|AL929318.11| Mouse DNA sequence from clone RP23-46P4 on chromosome 2, complete
              sequence
          Length = 164816

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    cttcagtgtccaaatggcca 278
              ||||||||||||||||||||
Sbjct: 107701 cttcagtgtccaaatggcca 107682
to top
>emb|CT030180.3| M.truncatula DNA sequence from clone MTH2-177C12 on chromosome 3,
             complete sequence
          Length = 141577

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   aatgttggtttgtcatcatt 197
             ||||||||||||||||||||
Sbjct: 79085 aatgttggtttgtcatcatt 79104
to top
>emb|AL607090.12| Mouse DNA sequence from clone RP23-273I17 on chromosome 4, complete
             sequence
          Length = 153056

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    aatggccccaggaagcagca 55
             ||||||||||||||||||||
Sbjct: 14020 aatggccccaggaagcagca 14039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,569,969
Number of Sequences: 3902068
Number of extensions: 2569969
Number of successful extensions: 43086
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43035
Number of HSP's gapped (non-prelim): 51
length of query: 319
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 297
effective length of database: 17,147,199,772
effective search space: 5092718332284
effective search space used: 5092718332284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top