ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet99d10 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 114 bits (285), Expect = 6e-26 Identities = 59/82 (71%), Positives = 59/82 (71%) Frame = +1 Query: 103 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXX 282 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTF Sbjct: 17 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFSAALALSSVLLSSAATSPPPAA 76 Query: 283 XDIAGLTPCKESKAFAKREKQS 348 DIAGLTPCKESKAFAKREKQS Sbjct: 77 ADIAGLTPCKESKAFAKREKQS 98
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 45.1 bits (105), Expect = 4e-05 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +1 Query: 136 SVSCSASSGDN-NNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXXXDIAGLTPCK 312 S+ CS S+ + NN+ SL A DI+GLTPCK Sbjct: 33 SIVCSGSTDEKINNADGKSSLKA-----LSAALALSSILVSSTVPALPASADISGLTPCK 87 Query: 313 ESKAFAKREKQS 348 ESK FAKREKQS Sbjct: 88 ESKQFAKREKQS 99
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 42.7 bits (99), Expect = 2e-04 Identities = 19/21 (90%), Positives = 20/21 (95%) Frame = +1 Query: 286 DIAGLTPCKESKAFAKREKQS 348 DIAGLTPCKESK FAKREKQ+ Sbjct: 78 DIAGLTPCKESKQFAKREKQA 98
>PSAF_CUCSA (P42048) Photosystem I reaction center subunit III (Photosystem I| 18.5 kDa protein) (PSI-F) (PS I subunit 7) (Fragment) Length = 26 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/20 (85%), Positives = 18/20 (90%) Frame = +1 Query: 286 DIAGLTPCKESKAFAKREKQ 345 DI+GLTPCKESK F KREKQ Sbjct: 1 DISGLTPCKESKQFXKREKQ 20
>PSAF_PEA (P20119) Photosystem I reaction center subunit III| (Light-harvesting complex I 17 kDa protein) (PSI-F) (Fragment) Length = 20 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/19 (89%), Positives = 18/19 (94%) Frame = +1 Query: 289 IAGLTPCKESKAFAKREKQ 345 I+GLTPCKESK FAKREKQ Sbjct: 2 ISGLTPCKESKQFAKREKQ 20
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 37.4 bits (85), Expect = 0.009 Identities = 24/71 (33%), Positives = 31/71 (43%) Frame = +1 Query: 133 LSVSCSASSGDNNNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXXXDIAGLTPCK 312 L V+C A + + T +L+AS DIAGLTPC Sbjct: 24 LRVACQAQKNETASKVGT-ALAAS-----------ALAAAVSLSAPSAAMADIAGLTPCS 71 Query: 313 ESKAFAKREKQ 345 ESKA+AK EK+ Sbjct: 72 ESKAYAKLEKK 82
>PSAF_MAIZE (P13193) Photosystem I reaction center subunit III| (Light-harvesting complex I 17 kDa protein) (PSI-F) (Fragment) Length = 20 Score = 33.1 bits (74), Expect = 0.17 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +1 Query: 289 IAGLTPCKESKAFAKREK 342 IAGLTP KESKAFAK EK Sbjct: 2 IAGLTPPKESKAFAKXEK 19
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 30.8 bits (68), Expect = 0.86 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = +1 Query: 286 DIAGLTPCKESKAFAKR 336 D+AGL PCK+S AF KR Sbjct: 24 DVAGLVPCKDSPAFQKR 40
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 30.8 bits (68), Expect = 0.86 Identities = 12/17 (70%), Positives = 14/17 (82%) Frame = +1 Query: 286 DIAGLTPCKESKAFAKR 336 D+AGL PCK+S AF KR Sbjct: 24 DVAGLVPCKDSPAFQKR 40
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/21 (66%), Positives = 14/21 (66%) Frame = +1 Query: 286 DIAGLTPCKESKAFAKREKQS 348 DI GLT C ES AF KR K S Sbjct: 25 DIGGLTKCSESPAFEKRLKAS 45
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +1 Query: 286 DIAGLTPCKESKAFAKR 336 D+AGL PCK SK F +R Sbjct: 23 DVAGLVPCKNSKEFQRR 39
>MXI1_RAT (O09015) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +1 Query: 106 PRL--SRPPARLSVSCSASSGDNNNSTATPS 192 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGSSNTSTANRS 70
>MXI1_MOUSE (P50540) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +1 Query: 106 PRL--SRPPARLSVSCSASSGDNNNSTATPS 192 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGSSNTSTANRS 70
>MXI1_HUMAN (P50539) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +1 Query: 106 PRL--SRPPARLSVSCSASSGDNNNSTATPS 192 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGTSNTSTANRS 70
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +1 Query: 286 DIAGLTPCKESKAFAKR 336 ++AGL PCK+S AF KR Sbjct: 25 EVAGLIPCKDSAAFNKR 41
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +1 Query: 286 DIAGLTPCKESKAFAKR 336 D+AGLTPC ES F +R Sbjct: 24 DVAGLTPCSESPRFIQR 40
>I11RA_PONPY (Q5RF19) Interleukin-11 receptor alpha chain precursor| (IL-11R-alpha) (IL-11RA) Length = 422 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 109 RLSRPPARLSVSCSASSGDNNNSTATPSLSASIKT 213 +L PPAR VSC A+ +N + T +PS + + T Sbjct: 108 QLGYPPARPVVSCQAADYENFSCTWSPSQISGLPT 142
>I11RA_HUMAN (Q14626) Interleukin-11 receptor alpha chain precursor| (IL-11R-alpha) (IL-11RA) Length = 422 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 109 RLSRPPARLSVSCSASSGDNNNSTATPSLSASIKT 213 +L PPAR VSC A+ +N + T +PS + + T Sbjct: 108 QLGYPPARPVVSCQAADYENFSCTWSPSQISGLPT 142
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +1 Query: 286 DIAGLTPCKESKAFAKREKQS 348 D+AGL PC +S AF +R K + Sbjct: 26 DVAGLIPCSQSDAFERRLKNT 46
>OTX1_BRARE (Q91994) Homeobox protein OTX1 (ZOTX1)| Length = 323 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +1 Query: 121 PPARLSVSCSASSGDNNNSTATPSLSASIKT 213 PPA S S+SS + N+T S S SI T Sbjct: 129 PPAVSSAGSSSSSSSSTNNTGISSTSTSIST 159
>NFIC_PIG (P21999) Nuclear factor 1 C-type (Nuclear factor 1/C) (NF1-C)| (NFI-C) (NF-I/C) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 506 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +1 Query: 106 PRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTF 216 PRL+ PPA S SS + S +TP S + ++F Sbjct: 450 PRLALPPATKPTSEGGSSSPTSPSYSTPGTSPANRSF 486
>PSAF_SYNVU (P23078) Photosystem I reaction center subunit III (PSI-F)| (Fragment) Length = 27 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +1 Query: 286 DIAGLTPCKESKAFAKR 336 D+AGL P K+S AF KR Sbjct: 1 DVAGLVPAKDSPAFQKR 17
>I11RA_RAT (Q99MF4) Interleukin-11 receptor alpha chain precursor| (IL-11R-alpha) (IL-11RA) Length = 431 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +1 Query: 109 RLSRPPARLSVSCSASSGDNNNSTATPSLSASIKT 213 +L PPAR VSC A +N + T +P + + T Sbjct: 108 KLGSPPARPEVSCQAVDYENFSCTWSPGRVSGLPT 142 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.305 0.119 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,803,853 Number of Sequences: 219361 Number of extensions: 108646 Number of successful extensions: 274 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 274 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (22.0 bits)
