ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet99d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related ... 214 4e-53
2emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor ... 92 4e-16
3gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, p... 50 0.001
4gb|BC108361.1| Mus musculus keratin complex 2, basic, gene 5, mR... 42 0.31
5gb|AC104862.15| Mus musculus chromosome 15, clone RP23-124I9, co... 42 0.31
6ref|NM_027011.1| Mus musculus keratin complex 2, basic, gene 5 (... 42 0.31
7gb|AC120787.14| Mus musculus chromosome 15, clone RP24-180L12, c... 42 0.31
8gb|AC102312.11| Mus musculus chromosome 10, clone RP24-428L4, co... 42 0.31
9gb|AF306785.1|AF306785 Mus musculus type II keratin 5 (K5) gene,... 42 0.31
10dbj|AK014363.1| Mus musculus 17 days embryo head cDNA, RIKEN ful... 42 0.31
11gb|BC006780.1| Mus musculus keratin complex 2, basic, gene 5, mR... 42 0.31
12gb|AC158595.25| Mus musculus 10 BAC RP24-216B14 (Roswell Park Ca... 42 0.31
13gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 1.2
14gb|AC023119.8| Homo sapiens BAC clone RP11-282B13 from 4, comple... 40 1.2
15ref|XM_606223.2| PREDICTED: Bos taurus similar to keratin 4, tra... 38 4.9
16ref|XM_880411.1| PREDICTED: Bos taurus similar to keratin 4, tra... 38 4.9
17ref|XM_867521.1| PREDICTED: Bos taurus similar to keratin 4, tra... 38 4.9
18ref|XM_880464.1| PREDICTED: Bos taurus similar to keratin 4, tra... 38 4.9
19ref|XM_717747.1| Candida albicans SC5314 hypothetical protein (C... 38 4.9
20ref|XM_717601.1| Candida albicans SC5314 hypothetical protein (C... 38 4.9
21gb|AC142448.3| Mus musculus BAC clone RP24-540M5 from chromosome... 38 4.9
22ref|XM_385470.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 38 4.9
23gb|AC092209.5| Homo sapiens BAC clone RP11-592C12 from 7, comple... 38 4.9
24gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete... 38 4.9
25emb|AJ785796.1| Protopterus aethiopicus mRNA for type II keratin... 38 4.9
26dbj|AK092155.1| Homo sapiens cDNA FLJ34836 fis, clone NT2NE2010400 38 4.9
27dbj|AB236413.1| Takifugu rubripes mRNA for c-myc, complete cds 38 4.9
28gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 38 4.9
29emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding... 38 4.9
30ref|NM_210978.1| Eremothecium gossypii AFR077Wp (AFR077W), mRNA 38 4.9
31emb|AJ237839.2|HSA237839 Homo sapiens mRNA for hypothetical protein 38 4.9
32gb|AF093117.1|AF093117 Homo sapiens chromosome 7qtelo BAC E3, co... 38 4.9
33dbj|AK112777.1| Ciona intestinalis cDNA, clone:cilv001m24, full ... 38 4.9
34ref|NM_001037875.1| Takifugu rubripes c-myc protein (c-myc), mRNA 38 4.9
35emb|BX000983.15| Mouse DNA sequence from clone RP24-260C8 on chr... 38 4.9

>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase
          Length = 1245

 Score =  214 bits (108), Expect = 4e-53
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagccacacgaccctccctcagtcctaagtagctacctagctaggtccaggtgcaagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17  aagccacacgaccctccctcagtcctaagtagctacctagctaggtccaggtgcaagaag 76

                                                           
Query: 61  aagctcagcttcagcaatggcgtccagagcagcagcggccatcgccgt 108
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  aagctcagcttcagcaatggcgtccagagcagcagcggccatcgccgt 124



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>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene),
           cultivar Cheyenne
          Length = 1226

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                             
Query: 59  agaagctcagcttcagcaatggcgtccagagcagcagcggccatcgccgt 108
           ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 62  agaagctcagcttcagcgatggcgtccagagcagcagcggccatcgccgt 111



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>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds
          Length = 1308

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 72  cagcaatggcgtccagagcagcagcggcc 100
           |||| ||||||||||||||||||||||||
Sbjct: 23  cagccatggcgtccagagcagcagcggcc 51



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>gb|BC108361.1| Mus musculus keratin complex 2, basic, gene 5, mRNA (cDNA clone
            IMAGE:6312495), partial cds
          Length = 2253

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 63   gctcagcttcagcaatggcgt 83
            |||||||||||||||||||||
Sbjct: 1315 gctcagcttcagcaatggcgt 1295



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>gb|AC104862.15| Mus musculus chromosome 15, clone RP23-124I9, complete sequence
          Length = 168581

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 63   gctcagcttcagcaatggcgt 83
            |||||||||||||||||||||
Sbjct: 4166 gctcagcttcagcaatggcgt 4186



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>ref|NM_027011.1| Mus musculus keratin complex 2, basic, gene 5 (Krt2-5), mRNA
          Length = 2203

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 63   gctcagcttcagcaatggcgt 83
            |||||||||||||||||||||
Sbjct: 1318 gctcagcttcagcaatggcgt 1298



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>gb|AC120787.14| Mus musculus chromosome 15, clone RP24-180L12, complete sequence
          Length = 156603

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 63   gctcagcttcagcaatggcgt 83
            |||||||||||||||||||||
Sbjct: 1728 gctcagcttcagcaatggcgt 1708



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>gb|AC102312.11| Mus musculus chromosome 10, clone RP24-428L4, complete sequence
          Length = 182940

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    agctacctagctaggtccagg 51
             |||||||||||||||||||||
Sbjct: 47078 agctacctagctaggtccagg 47058



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>gb|AF306785.1|AF306785 Mus musculus type II keratin 5 (K5) gene, complete cds
          Length = 10700

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 63   gctcagcttcagcaatggcgt 83
            |||||||||||||||||||||
Sbjct: 6531 gctcagcttcagcaatggcgt 6511



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>dbj|AK014363.1| Mus musculus 17 days embryo head cDNA, RIKEN full-length enriched
           library, clone:3300001P10 product:KERATIN (FRAGMENT)
           homolog [Rattus norvegicus], full insert sequence
          Length = 969

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 63  gctcagcttcagcaatggcgt 83
           |||||||||||||||||||||
Sbjct: 102 gctcagcttcagcaatggcgt 82



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>gb|BC006780.1| Mus musculus keratin complex 2, basic, gene 5, mRNA (cDNA clone
            MGC:8116 IMAGE:3589013), complete cds
          Length = 2203

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 63   gctcagcttcagcaatggcgt 83
            |||||||||||||||||||||
Sbjct: 1318 gctcagcttcagcaatggcgt 1298



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>gb|AC158595.25| Mus musculus 10 BAC RP24-216B14 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 231740

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    agctacctagctaggtccagg 51
             |||||||||||||||||||||
Sbjct: 18129 agctacctagctaggtccagg 18149



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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     gcagcagcggccatcgccgt 108
              ||||||||||||||||||||
Sbjct: 155467 gcagcagcggccatcgccgt 155486



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>gb|AC023119.8| Homo sapiens BAC clone RP11-282B13 from 4, complete sequence
          Length = 184121

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     gtcctaagtagctacctagc 41
              ||||||||||||||||||||
Sbjct: 104297 gtcctaagtagctacctagc 104278



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>ref|XM_606223.2| PREDICTED: Bos taurus similar to keratin 4, transcript variant 1
            (LOC527819), mRNA
          Length = 1908

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   gctcagcttcagcaatggc 81
            |||||||||||||||||||
Sbjct: 1306 gctcagcttcagcaatggc 1288



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>ref|XM_880411.1| PREDICTED: Bos taurus similar to keratin 4, transcript variant 8
            (LOC527819), mRNA
          Length = 1890

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   gctcagcttcagcaatggc 81
            |||||||||||||||||||
Sbjct: 1288 gctcagcttcagcaatggc 1270



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>ref|XM_867521.1| PREDICTED: Bos taurus similar to keratin 4, transcript variant 2
            (LOC527819), mRNA
          Length = 3108

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   gctcagcttcagcaatggc 81
            |||||||||||||||||||
Sbjct: 2506 gctcagcttcagcaatggc 2488



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>ref|XM_880464.1| PREDICTED: Bos taurus similar to keratin 4, transcript variant 9
            (LOC527819), mRNA
          Length = 3219

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   gctcagcttcagcaatggc 81
            |||||||||||||||||||
Sbjct: 2617 gctcagcttcagcaatggc 2599



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>ref|XM_717747.1| Candida albicans SC5314 hypothetical protein (CaO19_12092), mRNA
          Length = 1158

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 51  gtgcaagaagaagctcagc 69
           |||||||||||||||||||
Sbjct: 874 gtgcaagaagaagctcagc 892



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>ref|XM_717601.1| Candida albicans SC5314 hypothetical protein (CaO19_4622), mRNA
          Length = 1158

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 51  gtgcaagaagaagctcagc 69
           |||||||||||||||||||
Sbjct: 874 gtgcaagaagaagctcagc 892



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>gb|AC142448.3| Mus musculus BAC clone RP24-540M5 from chromosome 18, complete sequence
          Length = 170302

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     gaagctcagcttcagcaat 78
              |||||||||||||||||||
Sbjct: 113130 gaagctcagcttcagcaat 113148



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>ref|XM_385470.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05294.1)
            partial mRNA
          Length = 1470

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   gctcagcttcagcaatggc 81
            |||||||||||||||||||
Sbjct: 1348 gctcagcttcagcaatggc 1330



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>gb|AC092209.5| Homo sapiens BAC clone RP11-592C12 from 7, complete sequence
          Length = 14026

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    gaccctccctcagtcctaa 28
             |||||||||||||||||||
Sbjct: 13552 gaccctccctcagtcctaa 13570



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>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence
          Length = 452156

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 73     agcaatggcgtccagagcagcagcggc 99
              |||||||||||| | ||||||||||||
Sbjct: 232832 agcaatggcgtcaacagcagcagcggc 232806



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>emb|AJ785796.1| Protopterus aethiopicus mRNA for type II keratin 1 (krt1 gene)
          Length = 2295

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 64   ctcagcttcagcaatggcg 82
            |||||||||||||||||||
Sbjct: 1206 ctcagcttcagcaatggcg 1188



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>dbj|AK092155.1| Homo sapiens cDNA FLJ34836 fis, clone NT2NE2010400
          Length = 1984

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 57   gaagaagctcagcttcagc 75
            |||||||||||||||||||
Sbjct: 1569 gaagaagctcagcttcagc 1551



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>dbj|AB236413.1| Takifugu rubripes mRNA for c-myc, complete cds
          Length = 1307

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 57   gaagaagctcagcttcagc 75
            |||||||||||||||||||
Sbjct: 1061 gaagaagctcagcttcagc 1043



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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     gcaagaagaagctcagctt 71
              |||||||||||||||||||
Sbjct: 569836 gcaagaagaagctcagctt 569854



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>emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding protein
          Length = 2100

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 63  gctcagcttcagcaatggc 81
           |||||||||||||||||||
Sbjct: 878 gctcagcttcagcaatggc 896



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>ref|NM_210978.1| Eremothecium gossypii AFR077Wp (AFR077W), mRNA
          Length = 2379

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 53   gcaagaagaagctcagctt 71
            |||||||||||||||||||
Sbjct: 2327 gcaagaagaagctcagctt 2345



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>emb|AJ237839.2|HSA237839 Homo sapiens mRNA for hypothetical protein
          Length = 7288

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 66   cagcttcagcaatggcgtc 84
            |||||||||||||||||||
Sbjct: 5727 cagcttcagcaatggcgtc 5745



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>gb|AF093117.1|AF093117 Homo sapiens chromosome 7qtelo BAC E3, complete sequence
          Length = 147216

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 10   gaccctccctcagtcctaa 28
            |||||||||||||||||||
Sbjct: 1525 gaccctccctcagtcctaa 1543



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>dbj|AK112777.1| Ciona intestinalis cDNA, clone:cilv001m24, full insert sequence
          Length = 2220

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 76   aatggcgtccagagcagca 94
            |||||||||||||||||||
Sbjct: 1279 aatggcgtccagagcagca 1261



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>ref|NM_001037875.1| Takifugu rubripes c-myc protein (c-myc), mRNA
          Length = 1307

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 57   gaagaagctcagcttcagc 75
            |||||||||||||||||||
Sbjct: 1061 gaagaagctcagcttcagc 1043



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>emb|BX000983.15| Mouse DNA sequence from clone RP24-260C8 on chromosome 11, complete
            sequence
          Length = 29694

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 52   tgcaagaagaagctcagct 70
            |||||||||||||||||||
Sbjct: 4714 tgcaagaagaagctcagct 4696


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 910,308
Number of Sequences: 3902068
Number of extensions: 910308
Number of successful extensions: 69740
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69672
Number of HSP's gapped (non-prelim): 68
length of query: 108
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 87
effective length of database: 17,151,101,840
effective search space: 1492145860080
effective search space used: 1492145860080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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