| Clone Name | baet99d09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase Length = 1245 Score = 214 bits (108), Expect = 4e-53 Identities = 108/108 (100%) Strand = Plus / Plus Query: 1 aagccacacgaccctccctcagtcctaagtagctacctagctaggtccaggtgcaagaag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17 aagccacacgaccctccctcagtcctaagtagctacctagctaggtccaggtgcaagaag 76 Query: 61 aagctcagcttcagcaatggcgtccagagcagcagcggccatcgccgt 108 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 aagctcagcttcagcaatggcgtccagagcagcagcggccatcgccgt 124
>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar Cheyenne Length = 1226 Score = 91.7 bits (46), Expect = 4e-16 Identities = 49/50 (98%) Strand = Plus / Plus Query: 59 agaagctcagcttcagcaatggcgtccagagcagcagcggccatcgccgt 108 ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 62 agaagctcagcttcagcgatggcgtccagagcagcagcggccatcgccgt 111
>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds Length = 1308 Score = 50.1 bits (25), Expect = 0.001 Identities = 28/29 (96%) Strand = Plus / Plus Query: 72 cagcaatggcgtccagagcagcagcggcc 100 |||| |||||||||||||||||||||||| Sbjct: 23 cagccatggcgtccagagcagcagcggcc 51
>gb|BC108361.1| Mus musculus keratin complex 2, basic, gene 5, mRNA (cDNA clone IMAGE:6312495), partial cds Length = 2253 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 gctcagcttcagcaatggcgt 83 ||||||||||||||||||||| Sbjct: 1315 gctcagcttcagcaatggcgt 1295
>gb|AC104862.15| Mus musculus chromosome 15, clone RP23-124I9, complete sequence Length = 168581 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 gctcagcttcagcaatggcgt 83 ||||||||||||||||||||| Sbjct: 4166 gctcagcttcagcaatggcgt 4186
>ref|NM_027011.1| Mus musculus keratin complex 2, basic, gene 5 (Krt2-5), mRNA Length = 2203 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 gctcagcttcagcaatggcgt 83 ||||||||||||||||||||| Sbjct: 1318 gctcagcttcagcaatggcgt 1298
>gb|AC120787.14| Mus musculus chromosome 15, clone RP24-180L12, complete sequence Length = 156603 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 gctcagcttcagcaatggcgt 83 ||||||||||||||||||||| Sbjct: 1728 gctcagcttcagcaatggcgt 1708
>gb|AC102312.11| Mus musculus chromosome 10, clone RP24-428L4, complete sequence Length = 182940 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 agctacctagctaggtccagg 51 ||||||||||||||||||||| Sbjct: 47078 agctacctagctaggtccagg 47058
>gb|AF306785.1|AF306785 Mus musculus type II keratin 5 (K5) gene, complete cds Length = 10700 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 gctcagcttcagcaatggcgt 83 ||||||||||||||||||||| Sbjct: 6531 gctcagcttcagcaatggcgt 6511
>dbj|AK014363.1| Mus musculus 17 days embryo head cDNA, RIKEN full-length enriched library, clone:3300001P10 product:KERATIN (FRAGMENT) homolog [Rattus norvegicus], full insert sequence Length = 969 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 gctcagcttcagcaatggcgt 83 ||||||||||||||||||||| Sbjct: 102 gctcagcttcagcaatggcgt 82
>gb|BC006780.1| Mus musculus keratin complex 2, basic, gene 5, mRNA (cDNA clone MGC:8116 IMAGE:3589013), complete cds Length = 2203 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 gctcagcttcagcaatggcgt 83 ||||||||||||||||||||| Sbjct: 1318 gctcagcttcagcaatggcgt 1298
>gb|AC158595.25| Mus musculus 10 BAC RP24-216B14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 231740 Score = 42.1 bits (21), Expect = 0.31 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 agctacctagctaggtccagg 51 ||||||||||||||||||||| Sbjct: 18129 agctacctagctaggtccagg 18149
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gcagcagcggccatcgccgt 108 |||||||||||||||||||| Sbjct: 155467 gcagcagcggccatcgccgt 155486
>gb|AC023119.8| Homo sapiens BAC clone RP11-282B13 from 4, complete sequence Length = 184121 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gtcctaagtagctacctagc 41 |||||||||||||||||||| Sbjct: 104297 gtcctaagtagctacctagc 104278
>ref|XM_606223.2| PREDICTED: Bos taurus similar to keratin 4, transcript variant 1 (LOC527819), mRNA Length = 1908 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 gctcagcttcagcaatggc 81 ||||||||||||||||||| Sbjct: 1306 gctcagcttcagcaatggc 1288
>ref|XM_880411.1| PREDICTED: Bos taurus similar to keratin 4, transcript variant 8 (LOC527819), mRNA Length = 1890 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 gctcagcttcagcaatggc 81 ||||||||||||||||||| Sbjct: 1288 gctcagcttcagcaatggc 1270
>ref|XM_867521.1| PREDICTED: Bos taurus similar to keratin 4, transcript variant 2 (LOC527819), mRNA Length = 3108 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 gctcagcttcagcaatggc 81 ||||||||||||||||||| Sbjct: 2506 gctcagcttcagcaatggc 2488
>ref|XM_880464.1| PREDICTED: Bos taurus similar to keratin 4, transcript variant 9 (LOC527819), mRNA Length = 3219 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 gctcagcttcagcaatggc 81 ||||||||||||||||||| Sbjct: 2617 gctcagcttcagcaatggc 2599
>ref|XM_717747.1| Candida albicans SC5314 hypothetical protein (CaO19_12092), mRNA Length = 1158 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 gtgcaagaagaagctcagc 69 ||||||||||||||||||| Sbjct: 874 gtgcaagaagaagctcagc 892
>ref|XM_717601.1| Candida albicans SC5314 hypothetical protein (CaO19_4622), mRNA Length = 1158 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 gtgcaagaagaagctcagc 69 ||||||||||||||||||| Sbjct: 874 gtgcaagaagaagctcagc 892
>gb|AC142448.3| Mus musculus BAC clone RP24-540M5 from chromosome 18, complete sequence Length = 170302 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 gaagctcagcttcagcaat 78 ||||||||||||||||||| Sbjct: 113130 gaagctcagcttcagcaat 113148
>ref|XM_385470.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05294.1) partial mRNA Length = 1470 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 gctcagcttcagcaatggc 81 ||||||||||||||||||| Sbjct: 1348 gctcagcttcagcaatggc 1330
>gb|AC092209.5| Homo sapiens BAC clone RP11-592C12 from 7, complete sequence Length = 14026 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaccctccctcagtcctaa 28 ||||||||||||||||||| Sbjct: 13552 gaccctccctcagtcctaa 13570
>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence Length = 452156 Score = 38.2 bits (19), Expect = 4.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 73 agcaatggcgtccagagcagcagcggc 99 |||||||||||| | |||||||||||| Sbjct: 232832 agcaatggcgtcaacagcagcagcggc 232806
>emb|AJ785796.1| Protopterus aethiopicus mRNA for type II keratin 1 (krt1 gene) Length = 2295 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 ctcagcttcagcaatggcg 82 ||||||||||||||||||| Sbjct: 1206 ctcagcttcagcaatggcg 1188
>dbj|AK092155.1| Homo sapiens cDNA FLJ34836 fis, clone NT2NE2010400 Length = 1984 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 gaagaagctcagcttcagc 75 ||||||||||||||||||| Sbjct: 1569 gaagaagctcagcttcagc 1551
>dbj|AB236413.1| Takifugu rubripes mRNA for c-myc, complete cds Length = 1307 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 gaagaagctcagcttcagc 75 ||||||||||||||||||| Sbjct: 1061 gaagaagctcagcttcagc 1043
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 gcaagaagaagctcagctt 71 ||||||||||||||||||| Sbjct: 569836 gcaagaagaagctcagctt 569854
>emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding protein Length = 2100 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 gctcagcttcagcaatggc 81 ||||||||||||||||||| Sbjct: 878 gctcagcttcagcaatggc 896
>ref|NM_210978.1| Eremothecium gossypii AFR077Wp (AFR077W), mRNA Length = 2379 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 gcaagaagaagctcagctt 71 ||||||||||||||||||| Sbjct: 2327 gcaagaagaagctcagctt 2345
>emb|AJ237839.2|HSA237839 Homo sapiens mRNA for hypothetical protein Length = 7288 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 cagcttcagcaatggcgtc 84 ||||||||||||||||||| Sbjct: 5727 cagcttcagcaatggcgtc 5745
>gb|AF093117.1|AF093117 Homo sapiens chromosome 7qtelo BAC E3, complete sequence Length = 147216 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaccctccctcagtcctaa 28 ||||||||||||||||||| Sbjct: 1525 gaccctccctcagtcctaa 1543
>dbj|AK112777.1| Ciona intestinalis cDNA, clone:cilv001m24, full insert sequence Length = 2220 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 aatggcgtccagagcagca 94 ||||||||||||||||||| Sbjct: 1279 aatggcgtccagagcagca 1261
>ref|NM_001037875.1| Takifugu rubripes c-myc protein (c-myc), mRNA Length = 1307 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 gaagaagctcagcttcagc 75 ||||||||||||||||||| Sbjct: 1061 gaagaagctcagcttcagc 1043
>emb|BX000983.15| Mouse DNA sequence from clone RP24-260C8 on chromosome 11, complete sequence Length = 29694 Score = 38.2 bits (19), Expect = 4.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 tgcaagaagaagctcagct 70 ||||||||||||||||||| Sbjct: 4714 tgcaagaagaagctcagct 4696 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 910,308 Number of Sequences: 3902068 Number of extensions: 910308 Number of successful extensions: 69740 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69672 Number of HSP's gapped (non-prelim): 68 length of query: 108 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 87 effective length of database: 17,151,101,840 effective search space: 1492145860080 effective search space used: 1492145860080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)