>gb|AY835406.1| Hordeum vulgare Hs1 (Hs1) gene, complete cds
          Length = 7483

 Score =  361 bits (182), Expect = 6e-97
 Identities = 182/182 (100%)
 Strand = Plus / Plus

                                                                        
Query: 34   cacacccgaccctagagtgaccagaacacgagcaggaagcaagcaaccaagtttctgctt 93
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3803 cacacccgaccctagagtgaccagaacacgagcaggaagcaagcaaccaagtttctgctt 3862

                                                                        
Query: 94   ggagcaaggagcggtagaggtttcgaacgagagattagttaacccgagagtttgttgagc 153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3863 ggagcaaggagcggtagaggtttcgaacgagagattagttaacccgagagtttgttgagc 3922

                                                                        
Query: 154  tggaaccgtgctgaaagaaatggcgacgaccaagttgtccccgctctcgcccgtgcggcc 213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3923 tggaaccgtgctgaaagaaatggcgacgaccaagttgtccccgctctcgcccgtgcggcc 3982

              
Query: 214  cg 215
            ||
Sbjct: 3983 cg 3984

>gb|AF307333.1| Hordeum vulgare putative nematode-resistance protein (Hs1) mRNA,
           complete cds
          Length = 1404

 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 173 atggcgacgaccaagttgtccccgctctcgcccgtgcggcccg 215
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atggcgacgaccaagttgtccccgctctcgcccgtgcggcccg 43

>emb|BX883048.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 7/11
          Length = 349943

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   gaccaagttgtccccgctctc 201
             |||||||||||||||||||||
Sbjct: 93022 gaccaagttgtccccgctctc 93042

>ref|NG_004593.1| Rattus norvegicus Kiaa1949 pseudogene (Kiaa1949) on chromosome 20
          Length = 10748

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 181  gaccaagttgtccccgctctc 201
            |||||||||||||||||||||
Sbjct: 6813 gaccaagttgtccccgctctc 6833


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,234,061
Number of Sequences: 3902068
Number of extensions: 1234061
Number of successful extensions: 86481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86475
Number of HSP's gapped (non-prelim): 6
length of query: 215
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 193
effective length of database: 17,147,199,772
effective search space: 3309409555996
effective search space used: 3309409555996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)