Clone Name	baet99d06
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	159	3e-39
2	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	130	2e-30
3	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	130	2e-30
4	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	123	3e-28
5	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	121	8e-28
6	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	120	2e-27
7	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	110	2e-24
8	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	108	7e-24
9	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	107	1e-23
10	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	105	6e-23
11	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	94	1e-19
12	NUCL_XENLA (P20397) Nucleolin (Protein C23)	84	2e-16
13	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	78	9e-15
14	PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b...	77	2e-14
15	NUCL_RAT (P13383) Nucleolin (Protein C23)	76	5e-14
16	NUCL_CHICK (P15771) Nucleolin (Protein C23)	76	5e-14
17	NUCL_MESAU (P08199) Nucleolin (Protein C23)	76	5e-14
18	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	73	4e-13
19	NUCL_MACFA (Q4R4J7) Nucleolin	73	4e-13
20	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	73	4e-13
21	NUCL_PONPY (Q5RF26) Nucleolin	73	4e-13
22	GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon...	71	2e-12
23	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	68	1e-11
24	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	68	1e-11
25	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	67	3e-11
26	RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin...	66	4e-11
27	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	66	4e-11
28	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	65	6e-11
29	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	65	6e-11
30	EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb...	65	6e-11
31	TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p...	65	8e-11
32	RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co...	65	1e-10
33	TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)	65	1e-10
34	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	64	1e-10
35	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	64	2e-10
36	RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He...	64	2e-10
37	EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (...	63	3e-10
38	EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (...	62	5e-10
39	PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi...	62	7e-10
40	PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-...	62	9e-10
41	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	62	9e-10
42	GAR2_SCHPO (P41891) Protein gar2	62	9e-10
43	PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi...	61	1e-09
44	TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)	61	1e-09
45	TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)	61	1e-09
46	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	61	2e-09
47	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	61	2e-09
48	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	61	2e-09
49	PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind...	61	2e-09
50	PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi...	61	2e-09
51	PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi...	61	2e-09
52	RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre...	60	2e-09
53	PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi...	60	2e-09
54	PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-...	60	4e-09
55	PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi...	60	4e-09
56	CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine...	60	4e-09
57	CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine...	60	4e-09
58	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	59	5e-09
59	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	59	6e-09
60	SAP49_SCHPO (O14102) Spliceosome-associated protein 49	57	2e-08
61	YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 i...	57	3e-08
62	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	56	5e-08
63	RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ...	56	5e-08
64	SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Spli...	55	7e-08
65	SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Sp...	55	7e-08
66	SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Sp...	55	7e-08
67	SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Sp...	55	7e-08
68	PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi...	55	7e-08
69	SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Sp...	55	7e-08
70	RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ...	55	9e-08
71	PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (6...	55	1e-07
72	PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g...	55	1e-07
73	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	54	1e-07
74	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	54	1e-07
75	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	54	1e-07
76	TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)	54	2e-07
77	TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)	54	2e-07
78	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	54	3e-07
79	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	54	3e-07
80	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	54	3e-07
81	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	54	3e-07
82	RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA	53	3e-07
83	GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)	53	3e-07
84	PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...	52	1e-06
85	SXL_DROSU (Q24668) Protein sex-lethal	51	1e-06
86	SXL_DROME (P19339) Protein sex-lethal	51	1e-06
87	SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)	51	2e-06
88	SXL_CHRRU (O97018) Sex-lethal homolog	51	2e-06
89	HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4...	50	2e-06
90	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	50	3e-06
91	ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo...	50	3e-06
92	ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha...	50	3e-06
93	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	50	3e-06
94	ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha...	50	3e-06
95	ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	50	4e-06
96	ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)	50	4e-06
97	ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2	50	4e-06
98	ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	50	4e-06
99	PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi...	50	4e-06
100	PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi...	49	5e-06
101	PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi...	49	5e-06
102	PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi...	49	5e-06
103	PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi...	49	5e-06
104	PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi...	49	5e-06
105	ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)	49	5e-06
106	ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)	49	8e-06
107	ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (P...	49	8e-06
108	HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (...	49	8e-06
109	SCE3_SCHPO (O14369) Probable RNA-binding protein sce3	48	1e-05
110	CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1	48	1e-05
111	PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a...	48	1e-05
112	MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote...	48	1e-05
113	ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E...	47	2e-05
114	TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran...	47	3e-05
115	TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr...	47	3e-05
116	TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr...	47	3e-05
117	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	47	3e-05
118	MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote...	47	3e-05
119	RSD1_SCHPO (O13845) RNA-binding protein rsd1	47	3e-05
120	HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn...	47	3e-05
121	MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing prote...	47	3e-05
122	MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote...	46	4e-05
123	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	46	4e-05
124	PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	46	5e-05
125	PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5....	46	5e-05
126	MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote...	46	5e-05
127	YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i...	46	5e-05
128	MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing prote...	46	5e-05
129	HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hn...	46	5e-05
130	HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (...	45	7e-05
131	MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote...	45	9e-05
132	LARK_DROME (Q94901) RNA-binding protein lark	45	1e-04
133	NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO...	45	1e-04
134	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	45	1e-04
135	ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He...	44	2e-04
136	ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (...	44	2e-04
137	ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (...	44	2e-04
138	ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (...	44	2e-04
139	RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS...	44	2e-04
140	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	44	2e-04
141	RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss...	44	2e-04
142	MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote...	44	2e-04
143	FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing ...	44	3e-04
144	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	44	3e-04
145	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	44	3e-04
146	YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 i...	43	3e-04
147	PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	43	3e-04
148	TRA2_DROME (P19018) Transformer-2 sex-determining protein	43	3e-04
149	ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (...	43	3e-04
150	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	43	4e-04
151	NAM8_YEAST (Q00539) Protein NAM8	43	4e-04
152	ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ...	43	4e-04
153	GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein ...	42	6e-04
154	YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 i...	42	6e-04
155	RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h...	42	6e-04
156	RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h...	42	6e-04
157	MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa...	42	8e-04
158	RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p...	42	8e-04
159	MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa...	42	8e-04
160	THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and expor...	42	8e-04
161	REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2	42	8e-04
162	THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1...	42	8e-04
163	MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa...	42	8e-04
164	ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn...	42	0.001
165	ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (...	42	0.001
166	MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musash...	42	0.001
167	MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musa...	42	0.001
168	RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p...	42	0.001
169	RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro...	42	0.001
170	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	42	0.001
171	ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ...	42	0.001
172	RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa...	42	0.001
173	ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (...	42	0.001
174	RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15	41	0.002
175	MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)	41	0.002
176	MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)	41	0.002
177	DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp...	40	0.002
178	DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp...	40	0.002
179	TRA2_DROVI (O02008) Transformer-2 sex-determining protein	40	0.002
180	DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp...	40	0.002
181	RNP24_SCHPO (Q09100) RNA-binding protein rnp24	40	0.003
182	ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu...	40	0.004
183	ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu...	40	0.004
184	RAVR1_RAT (Q5XI28) Protein raver-1	39	0.006
185	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	39	0.006
186	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	39	0.006
187	RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p...	39	0.008
188	MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote...	39	0.008
189	ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/...	38	0.011
190	ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/...	38	0.011
191	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	38	0.011
192	PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5....	38	0.011
193	RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h...	38	0.011
194	SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7	38	0.014
195	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	38	0.014
196	ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1	38	0.014
197	RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-bindin...	38	0.014
198	SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Sp...	38	0.014
199	RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F...	37	0.019
200	ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimula...	37	0.019
201	ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ...	37	0.019
202	ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimu...	37	0.019
203	ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimu...	37	0.019
204	SGN1_YEAST (P40561) RNA-binding protein SGN1	37	0.019
205	HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (...	37	0.019
206	HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h...	37	0.025
207	FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncog...	37	0.025
208	SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein...	37	0.025
209	RAVR1_HUMAN (Q8IY67) Protein raver-1	37	0.025
210	IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 s...	37	0.025
211	IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 s...	37	0.025
212	FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)	37	0.025
213	YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 i...	37	0.025
214	FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)	37	0.025
215	ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ...	37	0.025
216	RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40	37	0.025
217	U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 aux...	37	0.032
218	SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2	37	0.032
219	HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ...	37	0.032
220	HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ...	37	0.032
221	HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (...	37	0.032
222	RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2	36	0.042
223	PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-bi...	36	0.042
224	PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-bi...	36	0.042
225	ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimu...	36	0.042
226	RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h...	36	0.042
227	PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi...	36	0.042
228	SAFB2_HUMAN (Q14151) Scaffold attachment factor B2	36	0.055
229	RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U...	36	0.055
230	RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2	36	0.055
231	U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 aux...	36	0.055
232	RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U...	36	0.055
233	RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U...	36	0.055
234	RBP1_DROME (Q02427) RNA-binding protein 1	35	0.072
235	SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attach...	35	0.072
236	BOLL_MACFA (Q8WP23) Protein boule-like	35	0.072
237	BOLL_HUMAN (Q8N9W6) Protein boule-like	35	0.072
238	SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold atta...	35	0.072
239	MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phos...	35	0.072
240	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	35	0.072
241	IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H ...	35	0.072
242	IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H ...	35	0.072
243	BOLL_MOUSE (Q924M5) Protein boule-like	35	0.072
244	SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pr...	35	0.093
245	SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-...	35	0.093
246	DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1	35	0.093
247	RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif p...	35	0.093
248	RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif p...	35	0.093
249	RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (...	35	0.093
250	SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4	35	0.093
251	SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pr...	35	0.093
252	RB97D_DROME (Q02926) Ribonucleoprotein RB97D	35	0.093
253	IF34_SCHPO (P78795) Probable eukaryotic translation initiation f...	35	0.093
254	SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pr...	35	0.093
255	SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pr...	35	0.093
256	EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing...	35	0.12
257	RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif pro...	35	0.12
258	DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding prote...	35	0.12
259	ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (...	35	0.12
260	EWS_MOUSE (Q61545) RNA-binding protein EWS	35	0.12
261	RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif pro...	35	0.12
262	RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif p...	35	0.12
263	RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif p...	35	0.12
264	A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1	35	0.12
265	MEPA_ERWCT (Q6D2M7) Penicillin-insensitive murein endopeptidase ...	35	0.12
266	MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)	35	0.12
267	A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1	35	0.12
268	IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SN...	34	0.16
269	TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein	34	0.16
270	RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif pro...	34	0.16
271	DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding prote...	34	0.16
272	PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin...	34	0.21
273	RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif pro...	34	0.21
274	SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl...	34	0.21
275	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	33	0.27
276	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	33	0.27
277	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	33	0.27
278	ARP2_PLAFA (P13824) Clustered-asparagine-rich protein (CARP)	33	0.27
279	SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pr...	33	0.27
280	SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pr...	33	0.27
281	RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif pro...	33	0.27
282	IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B ...	33	0.27
283	RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41	33	0.27
284	FCA_ARATH (O04425) Flowering time control protein FCA	33	0.27
285	RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif pro...	33	0.36
286	YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 i...	33	0.36
287	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	32	0.61
288	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	32	0.61
289	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	32	0.61
290	IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 R...	32	0.61
291	RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)	32	0.79
292	YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 ...	32	0.79
293	IF34_CAEEL (Q19706) Probable eukaryotic translation initiation f...	32	0.79
294	YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 i...	32	0.79
295	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	32	1.0
296	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	32	1.0
297	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	32	1.0
298	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	32	1.0
299	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	32	1.0
300	CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)	32	1.0
301	RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U...	32	1.0
302	IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B ...	32	1.0
303	SXL_MUSDO (O17310) Sex-lethal homolog	31	1.3
304	BOULE_DROME (Q24207) Protein boule	31	1.3
305	DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)	31	1.3
306	RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif p...	31	1.3
307	RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-ri...	31	1.3
308	MNDA_HUMAN (P41218) Myeloid cell nuclear differentiation antigen	31	1.3
309	DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso...	31	1.3
310	NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k...	31	1.8
311	HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1...	31	1.8
312	RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-ri...	31	1.8
313	RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated w...	31	1.8
314	RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei...	31	1.8
315	NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr...	31	1.8
316	NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting...	31	1.8
317	HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1...	31	1.8
318	NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot...	31	1.8
319	NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr...	31	1.8
320	NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr...	31	1.8
321	CPO_DROME (Q01617) Protein couch potato	31	1.8
322	NOP12_YEAST (Q08208) Nucleolar protein 12	30	2.3
323	MSL1_YEAST (P40567) U2 small nuclear ribonucleoprotein B"	30	2.3
324	FBX40_HUMAN (Q9UH90) F-box only protein 40 (Muscle disease-relat...	30	2.3
325	NOP12_KLULA (Q6CKV6) Nucleolar protein 12	30	2.3
326	CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associate...	30	2.3
327	NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA...	30	2.3
328	RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated w...	30	3.0
329	NOP12_CANGA (Q6FUS6) Nucleolar protein 12	30	3.0
330	HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (...	30	3.0
331	DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso...	30	3.0
332	DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso...	30	3.0
333	CC020_HUMAN (Q8ND61) Protein C3orf20	30	3.0
334	RAVR2_HUMAN (Q9HCJ3) Protein raver-2	30	3.9
335	THYG_BOVIN (P01267) Thyroglobulin precursor	30	3.9
336	DNAA_WOLSP (P35907) Chromosomal replication initiator protein dn...	30	3.9
337	DNAA_WOLTR (Q5GT09) Chromosomal replication initiator protein dnaA	30	3.9
338	DNAA_WOLPM (Q73IZ0) Chromosomal replication initiator protein dnaA	30	3.9
339	NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alph...	30	3.9
340	DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111...	30	3.9
341	PATL5_ARATH (Q9M0R2) Patellin-5	30	3.9
342	GLMU_BORPE (Q7VT27) Bifunctional protein glmU [Includes: UDP-N-a...	30	3.9
343	RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-ri...	29	5.1
344	LAMB3_MOUSE (Q61087) Laminin beta-3 chain precursor (Laminin 5 b...	29	5.1
345	RAVR2_MOUSE (Q7TPD6) Protein raver-2	29	5.1
346	IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B ...	29	5.1
347	NOP12_SCHPO (O13741) Nucleolar protein 12	29	5.1
348	HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)	29	6.7
349	COOS_METJA (Q58138) Carbon monoxide dehydrogenase (EC 1.2.99.2) ...	29	6.7
350	SAMD6_RAT (P0C0T2) Sterile alpha motif domain-containing protein...	29	6.7
351	PNO_CRYPV (Q968X7) Pyruvate dehydrogenase [NADP+] (EC 1.2.1.51) ...	29	6.7
352	CNOT4_MOUSE (Q8BT14) CCR4-NOT transcription complex subunit 4 (E...	29	6.7
353	CNOT4_HUMAN (O95628) CCR4-NOT transcription complex subunit 4 (E...	29	6.7
354	LAML1_CAEEL (Q18823) Laminin-like protein C54D1.5 precursor	29	6.7
355	DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso...	29	6.7
356	PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-bin...	29	6.7
357	DAZ1_CAEEL (Q20870) DAZ protein 1	29	6.7
358	IF2_SYNP6 (Q5N0A5) Translation initiation factor IF-2	28	8.7
359	YBLC_SCHPO (Q9URV0) Hypothetical RNA-binding protein C106.12c in...	28	8.7
360	IF39_YEAST (P06103) Eukaryotic translation initiation factor 3 9...	28	8.7

---

>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score =  159 bits (402), Expect = 3e-39
 Identities = 75/150 (50%), Positives = 105/150 (70%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXX 182
           YD++TDRSRGFAFVTM + EEA +A+++F+G+ +GGRTV+VNFPEVPRGGE         
Sbjct: 147 YDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIR 206

Query: 183 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                  D   +K+Y  NL W + +  L+ AF  QPG + A+VI++R +GRSRGFGF++F
Sbjct: 207 STYQGFVDS-PHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITF 265

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
            + +   +AL  M+ VEL+GRPLRL++A Q
Sbjct: 266 SSAEAMNSALDTMNEVELEGRPLRLNVAGQ 295



 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 21/74 (28%), Positives = 44/74 (59%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           ++Y GNL + + +  L   F     +    ++++R T RSRGF FV+  ++++A  A++ 
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174

Query: 399 MDGVELDGRPLRLS 440
            DG ++ GR ++++
Sbjct: 175 FDGSQVGGRTVKVN 188

---

>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score =  130 bits (326), Expect = 2e-30
 Identities = 67/148 (45%), Positives = 93/148 (62%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXX 182
           YDK+T RSRGF FVTM++ EE   A Q FNG  L GR +RVN    P   E         
Sbjct: 120 YDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSR 179

Query: 183 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                   D + +VY GNL WGV  DAL+T F  Q  +V A+V+++RD+GRSRGFGFV++
Sbjct: 180 GGGSF---DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTY 236

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLA 446
            + ++   A++++DGV+L+GR +R+S A
Sbjct: 237 SSAEEVNNAIESLDGVDLNGRAIRVSPA 264



 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 31/74 (41%), Positives = 46/74 (62%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ GNL +   + AL   FE    +    VI+++ TGRSRGFGFV+  + ++  AA Q 
Sbjct: 88  KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 399 MDGVELDGRPLRLS 440
            +G ELDGR LR++
Sbjct: 148 FNGYELDGRALRVN 161

---

>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score =  130 bits (326), Expect = 2e-30
 Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF---PEVPRGGEXXXXXX 173
           YDK+T RSRGF FVTM++ EE   A Q FNG  L GR +RVN    PE            
Sbjct: 120 YDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSS 179

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                      D + +VY GNL WGV  DAL+T F  Q  +V A+V+++RD+GRSRGFGF
Sbjct: 180 FRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGF 239

Query: 354 VSFHTIQDAXAALQAMDGVELDGRPLRLSLA 446
           V++ + ++   A++++DGV+L+GR +R+S A
Sbjct: 240 VTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 31/74 (41%), Positives = 46/74 (62%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ GNL +   + AL   FE    +    VI+++ TGRSRGFGFV+  + ++  AA Q 
Sbjct: 88  KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 399 MDGVELDGRPLRLS 440
            +G ELDGR LR++
Sbjct: 148 FNGYELDGRALRVN 161

---

>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score =  123 bits (308), Expect = 3e-28
 Identities = 68/166 (40%), Positives = 93/166 (56%), Gaps = 16/166 (9%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVP-----------RG 149
           YDK+T RSRGF FVTM+T EE   A Q FNG  + GR +RVN    P           RG
Sbjct: 120 YDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRG 179

Query: 150 GEXXXXXXXXXXXXXXXXD-----DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVI 314
           G                       D + +VY GNL WGV   ALK  F  Q  +V A+V+
Sbjct: 180 GNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVV 239

Query: 315 FERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
           ++RD+GRSRGFGFV++ + ++   A+ +++GV+LDGR +R+S A +
Sbjct: 240 YDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285



 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 31/74 (41%), Positives = 47/74 (63%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ GNL + V + AL   FE    +    VI+++ TGRSRGFGFV+  T ++  AA Q 
Sbjct: 88  KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147

Query: 399 MDGVELDGRPLRLS 440
            +G E+DGR +R++
Sbjct: 148 FNGYEIDGRAIRVN 161

---

>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score =  121 bits (304), Expect = 8e-28
 Identities = 66/166 (39%), Positives = 93/166 (56%), Gaps = 16/166 (9%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVP-----------RG 149
           YDK++ RSRGF FVTM+T EE   A Q FNG  + GR +RVN    P           RG
Sbjct: 121 YDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRG 180

Query: 150 GEXXXXXXXXXXXXXXXXD-----DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVI 314
           G                       D + +VY GNL WGV   ALK  F  Q  +V A+V+
Sbjct: 181 GNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVV 240

Query: 315 FERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
           ++RD+GRSRGFGFV++ + ++   A+ +++G++LDGR +R+S A +
Sbjct: 241 YDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ GNL + V + AL   FE    +    VI+++ +GRSRGFGFV+  T ++  AA Q 
Sbjct: 89  KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148

Query: 399 MDGVELDGRPLRLS 440
            +G E+DGR +R++
Sbjct: 149 FNGYEIDGRAIRVN 162

---

>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score =  120 bits (300), Expect = 2e-27
 Identities = 68/157 (43%), Positives = 91/157 (57%), Gaps = 9/157 (5%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVP--------RGGEX 158
           YDKIT RSRGF FVTM++  E   A Q FNG  L GR +RVN    P        RG   
Sbjct: 124 YDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRS 183

Query: 159 XXXXXXXXXXXXXXXDDGT-YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR 335
                            G+  +VY GNL WGV   AL++ F  Q  +V ARVI++RD+GR
Sbjct: 184 SFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGR 243

Query: 336 SRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLA 446
           S+GFGFV++ + Q+   A++++DG +LDGR +R+S A
Sbjct: 244 SKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280



 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 32/74 (43%), Positives = 47/74 (63%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ GNL + V +  L   FE    +    VI+++ TGRSRGFGFV+  ++ +  AA Q 
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query: 399 MDGVELDGRPLRLS 440
            +G ELDGRPLR++
Sbjct: 152 FNGYELDGRPLRVN 165



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           YD+ + RS+GF FVT  +++E   A++  +GA L GR +RV+  E
Sbjct: 237 YDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281

---

>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score =  110 bits (274), Expect = 2e-24
 Identities = 62/150 (41%), Positives = 87/150 (58%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXX 182
           Y++ TDRSRGF FVTM+T EEA KAV++ NG  + GR + VN    PRG           
Sbjct: 88  YNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPERAPRGDF- 145

Query: 183 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                   + + +VY GNL W V    L+  F     +V ARV+ +R+TGRSRGFGFV+ 
Sbjct: 146 --------EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTM 197

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
            +  +   A+ A+DG  LDGR +R+++A +
Sbjct: 198 SSESEVNDAIAALDGQTLDGRAVRVNVAEE 227



 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 30/77 (38%), Positives = 51/77 (66%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ GNL + V ++ L   F+    +  A VI+ R+T RSRGFGFV+  T+++A  A++ 
Sbjct: 56  KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115

Query: 399 MDGVELDGRPLRLSLAA 449
           ++G ++DGR L ++ AA
Sbjct: 116 LNGYDMDGRQLTVNKAA 132

---

>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score =  108 bits (270), Expect = 7e-24
 Identities = 59/148 (39%), Positives = 89/148 (60%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXX 182
           Y++ TD+SRGF FVTM+T EEA KAV+M+N   + GR + VN  +  R GE         
Sbjct: 169 YNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVN--KAARRGERPERPPRTF 226

Query: 183 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                   + +Y++Y GN+ WG+    L+  F     +V ARV+++R+TGRSRGFGFV+ 
Sbjct: 227 --------EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTM 278

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLA 446
            +  +   A+  +DG  LDGR +R+++A
Sbjct: 279 ASEAEMSDAIANLDGQSLDGRTIRVNVA 306



 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
           K++ GNL + V ++ L   FE Q G+V  A VI+ RDT +SRGFGFV+  T+++A  A++
Sbjct: 137 KLFVGNLPYDVDSEGLARLFE-QAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195

Query: 396 AMDGVELDGRPLRLSLAAQ 452
             +  +++GR L ++ AA+
Sbjct: 196 MYNRYDVNGRLLTVNKAAR 214



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           YD+ T RSRGF FVTMA+  E + A+   +G  L GRT+RVN  E
Sbjct: 263 YDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307

---

>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score =  107 bits (268), Expect = 1e-23
 Identities = 59/150 (39%), Positives = 86/150 (57%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXX 182
           Y++ TDRSRGF FVTM+T EEA KAV++++   L GR + VN    PRG           
Sbjct: 130 YNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVN-KAAPRGSRPERAPRTF- 187

Query: 183 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                     TY++Y GN+ W +    L+  F     +V ARV+F+R++GRSRGFGFV+ 
Sbjct: 188 --------QPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTM 239

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
            +  +   A+  +DG  LDGR +R++ A +
Sbjct: 240 SSEAEMSEAIANLDGQTLDGRTIRVNAAEE 269



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
           K++ GNL + + ++ L   F+ Q G+V  A VI+ R+T RSRGFGFV+  T+++A  A++
Sbjct: 98  KLFVGNLPYDIDSEGLAQLFQ-QAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVE 156

Query: 396 AMDGVELDGRPLRLSLAA 449
                +L+GR L ++ AA
Sbjct: 157 LYSQYDLNGRLLTVNKAA 174

---

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score =  105 bits (262), Expect = 6e-23
 Identities = 58/150 (38%), Positives = 86/150 (57%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXX 182
           Y++ TD+SRGF FVTM++ +EA  AV+ FN   L GR + VN    PRG           
Sbjct: 183 YNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-KAAPRGSRPERAPRVY- 240

Query: 183 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                   +  ++VY GNL W V    L+  F     +V ARV+++R+TGRSRGFGFV+ 
Sbjct: 241 --------EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTM 292

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
             + +   A+ A+DG  L+GR +R+++A +
Sbjct: 293 SDVDELNEAISALDGQNLEGRAIRVNVAEE 322



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 29/77 (37%), Positives = 48/77 (62%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ GNL + V + AL   FE    +  A VI+ R+T +SRGFGFV+  ++ +A  A++ 
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210

Query: 399 MDGVELDGRPLRLSLAA 449
            +  +L+GR L ++ AA
Sbjct: 211 FNRYDLNGRLLTVNKAA 227

---

>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 54/148 (36%), Positives = 79/148 (53%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXX 182
           YDK + RSR F FVTM T E+A   ++  N   +GGR ++VN  E P  G          
Sbjct: 117 YDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAED 176

Query: 183 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                   +  YKVY GNL   V  + LK  F  +  ++GA+V     T +S GFGFVSF
Sbjct: 177 SQFV----ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSF 232

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLA 446
            + ++  AA+QA++   L+G+ +R++ A
Sbjct: 233 SSEEEVEAAIQALNNSVLEGQKIRVNKA 260



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 26/85 (30%), Positives = 53/85 (62%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           +G  ++Y GN+   +  D L+T  E    +  A V++++ +GRSR FGFV+  T++DA A
Sbjct: 81  EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140

Query: 387 ALQAMDGVELDGRPLRLSLAAQNLQ 461
            ++ ++  E+ GR +++++  + L+
Sbjct: 141 VIEKLNDTEIGGRKIKVNITEKPLE 165

---

>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEV--PRGGEXXXXXXXXXXXXX 194
           R++GFAF+  ++AE+A  A+   N   + GR++R+ F +   P+GG              
Sbjct: 448 RAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVR 507

Query: 195 XXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQ 374
              +D T              + LK AF+G    V AR++ +RDTG S+GFGFV F T +
Sbjct: 508 GLSEDTT-------------EETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAE 551

Query: 375 DAXAALQAMDGVELDGRPLRLSLA 446
           DA AA +AM+  E+DG  + L  A
Sbjct: 552 DAKAAKEAMEDGEIDGNKVTLDFA 575



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           ++G A+V  +  +EA KA++   GA + GR++ V+F      GE                
Sbjct: 360 NKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFT-----GEKSQNSGNKKG------ 408

Query: 204 DDGTYKVYA-GNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
            +G  KV    NL +    D+L+  FE         +   ++ GR++GF F+ F + +DA
Sbjct: 409 PEGDSKVLVVNNLSYSATEDSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSAEDA 463

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A+ + +  E++GR +RL  +
Sbjct: 464 KDAMDSCNNTEIEGRSIRLEFS 485



 Score = 32.7 bits (73), Expect = 0.46
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRG 149
           D+ T  S+GF FV  +TAE+A  A +      + G  V ++F + P+G
Sbjct: 533 DRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAK-PKG 579

---

>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 77.8 bits (190), Expect(2) = 9e-15
 Identities = 36/76 (47%), Positives = 54/76 (71%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           ++Y GNL WGV   AL+  F  Q  +V ARVI++RD+GRS+GFGFV+  + Q+   A+ +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317

Query: 399 MDGVELDGRPLRLSLA 446
           ++G +LDGR +R+S A
Sbjct: 318 LNGADLDGRQIRVSEA 333



 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 45/74 (60%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ GNL + V +  L   FE    +    VI+++ TGRSRGFGFV+  T  +  AA Q 
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159

Query: 399 MDGVELDGRPLRLS 440
            +G E +GRPLR++
Sbjct: 160 FNGYEFEGRPLRVN 173



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 26/42 (61%), Positives = 29/42 (69%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           YDK+T RSRGF FVTM+TA E   A Q FNG    GR +RVN
Sbjct: 132 YDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173



 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEV--PRG 149
           YD+ + RS+GF FVT+++++E  KA+   NGA L GR +RV+  E   PRG
Sbjct: 290 YDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRG 340



 Score = 20.8 bits (42), Expect(2) = 9e-15
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 89  QRSPAGREDSQGEFPGSAARRRKGSGIGS 175
           QRS  G   SQ    GS +    GSG G+
Sbjct: 229 QRSGGGYGGSQRSSYGSGSGSGSGSGSGN 257

---

>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 43/145 (29%), Positives = 74/145 (51%)
 Frame = +3

Query: 18  DRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXX 197
           +++  +AFV    + +A  A+Q  NG  +    V++N+                      
Sbjct: 111 NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW----------------AFQSQQ 154

Query: 198 XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQD 377
              D T+ ++ G+L   V  + L+ AF+  P  +   V+++  TG SRG+GFVSF +  D
Sbjct: 155 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 214

Query: 378 AXAALQAMDGVELDGRPLRLSLAAQ 452
           A  A+ +M G +L+GRPLR++ AA+
Sbjct: 215 AQNAMDSMQGQDLNGRPLRINWAAK 239



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           +D  T  SRG+ FV+  + ++A  A+    G  L GR +R+N+
Sbjct: 194 WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 236

---

>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 75.9 bits (185), Expect = 5e-14
 Identities = 47/142 (33%), Positives = 74/142 (52%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+G+AF+  A+ E+A +A+   N   + GRT+R+   + PRG                 
Sbjct: 523 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPSKTLFVKGL 581

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
            +D T              + LK +FEG    V AR++ +R+TG S+GFGFV F++ +DA
Sbjct: 582 SEDTT-------------EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 625

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
            AA +AM+  E+DG  + L  A
Sbjct: 626 KAAKEAMEDGEIDGNKVTLDWA 647



 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 34/141 (24%), Positives = 65/141 (46%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           RS+G A++   +  +A K ++   GA + GR+V + +      GE               
Sbjct: 430 RSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT-----GEKGQRQERTGKNSTWS 484

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
            +  T  +   NL +    + L+  FE    +     + +   G+S+G+ F+ F + +DA
Sbjct: 485 GESKT--LVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDA 538

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             AL + + +E++GR +RL L
Sbjct: 539 KEALNSCNKMEIEGRTIRLEL 559



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 38/144 (26%), Positives = 64/144 (44%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  T  +R F +V   +AE+  KA+++  G  + G  +++   E P+G +          
Sbjct: 343 DVRTGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGRDSKKVRAART- 397

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       + A NL + +  D LK  FE     V  R++ +   GRS+G  ++ F 
Sbjct: 398 ------------LLAKNLSFNITEDELKEVFEDA---VEIRLVSQ--DGRSKGIAYIEFK 440

Query: 366 TIQDAXAALQAMDGVELDGRPLRL 437
           +  DA   L+   G E+DGR + L
Sbjct: 441 SEADAEKNLEEKQGAEIDGRSVSL 464

---

>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 75.9 bits (185), Expect = 5e-14
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF--PEVPRGGEXXXXXXXXXXXXX 194
           R +G+AFV   TAE+A +A+   N   + GR +R+ F  P   +G               
Sbjct: 496 RPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGN----------MNAR 545

Query: 195 XXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQ 374
              +  +  ++   L      + L+ +FEG    + AR++ +RDTG S+GFGFV F + +
Sbjct: 546 GGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPE 602

Query: 375 DAXAALQAMDGVELDGRPLRLSLA 446
           DA AA +AM+  E+DG  + L  A
Sbjct: 603 DAKAAKEAMEDGEIDGNKVTLDFA 626



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 6/152 (3%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFP------EVPRGGEXXXXXXXXXX 185
           S+G A++   T  EA KA++   G  + GR + +++       E  +GG           
Sbjct: 407 SKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGG----------- 455

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                 +  +  +   NL +    + L+  F+    +     + + + GR +G+ FV F 
Sbjct: 456 -----GERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFP 506

Query: 366 TIQDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
           T +DA  AL + +  E++GR +RL  ++ + Q
Sbjct: 507 TAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQ 538



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 34/146 (23%), Positives = 62/146 (42%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           S+ F +V   +AE+  KA+Q+ NG  L G  +++                          
Sbjct: 320 SKRFGYVDFLSAEDMDKALQL-NGKKLMGLEIKLE------------KAKSKESLKENKK 366

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           +     ++  NL + V  D +K  FE     +  R++  ++ G S+G  ++ F T  +A 
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENA---LEVRLVLNKE-GSSKGMAYIEFKTEAEAE 422

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            AL+   G E+DGR + +    +  Q
Sbjct: 423 KALEEKQGTEVDGRAMVIDYTGEKSQ 448



 Score = 29.6 bits (65), Expect = 3.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFP----EVPRGG 152
           D+ T  S+GF FV  ++ E+A  A +      + G  V ++F     E  RGG
Sbjct: 584 DRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGG 636

---

>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 75.9 bits (185), Expect = 5e-14
 Identities = 47/142 (33%), Positives = 74/142 (52%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+G+AF+  A+ E+A +A+   N   + GRT+R+   + PRG                 
Sbjct: 520 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPSKTLFVKGL 578

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
            +D T              + LK +FEG    V AR++ +R+TG S+GFGFV F++ +DA
Sbjct: 579 SEDTT-------------EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 622

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
            AA +AM+  E+DG  + L  A
Sbjct: 623 KAAKEAMEDGEIDGNKVTLDWA 644



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 33/141 (23%), Positives = 65/141 (46%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+G A++   +  +A K ++   GA + GR+V + +      GE               
Sbjct: 427 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT-----GEKGQRQERTGKNSTWS 481

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
            +  T  +   NL +    + L+  FE    +     + +   G+S+G+ F+ F + +DA
Sbjct: 482 GESKT--LVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDA 535

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             AL + + +E++GR +RL L
Sbjct: 536 KEALNSCNKMEIEGRTIRLEL 556



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 35/144 (24%), Positives = 60/144 (41%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  T  +R F +V   +AE+  KA+++  G  + G  +++   E P+G +          
Sbjct: 340 DVRTGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGRDSKKVRAART- 394

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       + A NL + +  D LK  FE         +      G+S+G  ++ F 
Sbjct: 395 ------------LLAKNLSFNITEDELKEVFED-----ALEIRLVSQDGKSKGIAYIEFK 437

Query: 366 TIQDAXAALQAMDGVELDGRPLRL 437
           +  DA   L+   G E+DGR + L
Sbjct: 438 SEADAEKNLEEKQGAEIDGRSVSL 461

---

>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 33/75 (44%), Positives = 47/75 (62%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++ G L W +  + LK  FE   G++GARVI+ER T RSRG+G+V F     A  A+Q M
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229

Query: 402 DGVELDGRPLRLSLA 446
            G E+DGRP+   ++
Sbjct: 230 QGKEIDGRPINCDMS 244



 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 41/149 (27%), Positives = 68/149 (45%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXX 182
           Y++ TDRSRG+ +V       A KA+Q   G  + GR +  +       G          
Sbjct: 201 YERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGD 260

Query: 183 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                   + +  ++ GNL +    DA+   F     +V  R+    +T + +GFG+V F
Sbjct: 261 TPS-----EPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQF 315

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLAA 449
             ++DA  AL A+ G  +D RP+RL  ++
Sbjct: 316 SNMEDAKKALDALQGEYIDNRPVRLDFSS 344

---

>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 45/142 (31%), Positives = 73/142 (51%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+G+AF+  A+ E+A +A+   N   + GR +R+   + PRG                 
Sbjct: 521 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPSKTLFVKGL 579

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
            +D T              + LK +F+G    V AR++ +R+TG S+GFGFV F++ +DA
Sbjct: 580 SEDTT-------------EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 623

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
            AA +AM+  E+DG  + L  A
Sbjct: 624 KAAKEAMEDGEIDGNKVTLDWA 645



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 32/141 (22%), Positives = 62/141 (43%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+G A++   T  +A K  +   G  + GR++ + +      GE               
Sbjct: 427 KSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYT-----GEKGQNQDYRGGKNSTW 481

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
             +    V + NL +    + L+  FE    +     + +   G+S+G+ F+ F + +DA
Sbjct: 482 SGESKTLVLS-NLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 536

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             AL + +  E++GR +RL L
Sbjct: 537 KEALNSCNKREIEGRAIRLEL 557



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 35/138 (25%), Positives = 58/138 (42%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           +R F +V   +AE+  KA+++  G  + G  +++   E P+G +                
Sbjct: 346 TRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGKDSKKERDART------- 394

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 + A NL + V  D LK  FE       A +      G+S+G  ++ F T  DA 
Sbjct: 395 ------LLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAE 443

Query: 384 AALQAMDGVELDGRPLRL 437
              +   G E+DGR + L
Sbjct: 444 KTFEEKQGTEIDGRSISL 461

---

>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 45/142 (31%), Positives = 73/142 (51%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+G+AF+  A+ E+A +A+   N   + GR +R+   + PRG                 
Sbjct: 520 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPSKTLFVKGL 578

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
            +D T              + LK +F+G    V AR++ +R+TG S+GFGFV F++ +DA
Sbjct: 579 SEDTT-------------EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 622

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
            AA +AM+  E+DG  + L  A
Sbjct: 623 KAAKEAMEDGEIDGNKVTLDWA 644



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 32/141 (22%), Positives = 62/141 (43%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+G A++   T  +A K  +   G  + GR++ + +      GE               
Sbjct: 426 KSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYT-----GEKGQNQDYRGGKNSTW 480

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
             +    V + NL +    + L+  FE    +     + +   G+S+G+ F+ F + +DA
Sbjct: 481 SGESKTLVLS-NLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 535

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             AL + +  E++GR +RL L
Sbjct: 536 KEALNSCNKREIEGRAIRLEL 556



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 35/138 (25%), Positives = 58/138 (42%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           +R F +V   +AE+  KA+++  G  + G  +++   E P+G +                
Sbjct: 345 TRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGKDSKKERDART------- 393

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 + A NL + V  D LK  FE       A +      G+S+G  ++ F T  DA 
Sbjct: 394 ------LLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAE 442

Query: 384 AALQAMDGVELDGRPLRL 437
              +   G E+DGR + L
Sbjct: 443 KTFEEKQGTEIDGRSISL 460

---

>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 45/142 (31%), Positives = 73/142 (51%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+G+AF+  A+ E+A +A+   N   + GR +R+   + PRG                 
Sbjct: 522 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPSKTLFVKGL 580

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
            +D T              + LK +F+G    V AR++ +R+TG S+GFGFV F++ +DA
Sbjct: 581 SEDTT-------------EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 624

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
            AA +AM+  E+DG  + L  A
Sbjct: 625 KAAKEAMEDGEIDGNKVTLDWA 646



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 32/141 (22%), Positives = 62/141 (43%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+G A++   T  +A K  +   G  + GR++ + +      GE               
Sbjct: 428 KSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYT-----GEKGQNQDYRGGKNSTW 482

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
             +    V + NL +    + L+  FE    +     + +   G+S+G+ F+ F + +DA
Sbjct: 483 SGESKTLVLS-NLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 537

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             AL + +  E++GR +RL L
Sbjct: 538 KEALNSCNKREIEGRAIRLEL 558



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 35/138 (25%), Positives = 58/138 (42%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           +R F +V   +AE+  KA+++  G  + G  +++   E P+G +                
Sbjct: 347 TRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGKDSKKERDART------- 395

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 + A NL + V  D LK  FE       A +      G+S+G  ++ F T  DA 
Sbjct: 396 ------LLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAE 444

Query: 384 AALQAMDGVELDGRPLRL 437
              +   G E+DGR + L
Sbjct: 445 KTFEEKQGTEIDGRSISL 462

---

>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 36/76 (47%), Positives = 51/76 (67%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L WG    +L+ AF     +V A+VI +R+TGRSRGFGFV+F+    A AA+  
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95

Query: 399 MDGVELDGRPLRLSLA 446
           MDG EL+GR +R++ A
Sbjct: 96  MDGKELNGRHIRVNPA 111



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN----FPEVPR 146
           D+ T RSRGF FV       A  A+   +G  L GR +RVN     P  PR
Sbjct: 69  DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPR 119

---

>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 42/142 (29%), Positives = 70/142 (49%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           + +G+AF+  A+ E+A +A+   N   + GRT+R+                         
Sbjct: 521 KPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQ------------------GSNS 562

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
               +  ++   L      + LK +FEG    V AR++ +R+TG S+GFGFV F++ +DA
Sbjct: 563 RSQPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 619

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
            AA +AM+  E+DG  + L  A
Sbjct: 620 KAAKEAMEDGEIDGNKVTLDWA 641



 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 33/145 (22%), Positives = 65/145 (44%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+G A++   +  +A K ++   GA + GR+V + +      GE               
Sbjct: 428 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT-----GEKGQRQERTGKTSTWS 482

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
            +  T  +   NL +    + L+  FE    +     + +   G+ +G+ F+ F + +DA
Sbjct: 483 GESKT--LVLSNLSYSATKETLEEVFEKATFIK----VPQNPHGKPKGYAFIEFASFEDA 536

Query: 381 XAALQAMDGVELDGRPLRLSLAAQN 455
             AL + + +E++GR +RL L   N
Sbjct: 537 KEALNSCNKMEIEGRTIRLELQGSN 561



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 35/144 (24%), Positives = 60/144 (41%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  T  +R F +V   +AE+  KA+++  G  + G  +++   E P+G +          
Sbjct: 341 DVRTGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGRDSKKVRAART- 395

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       + A NL + +  D LK  FE         +      G+S+G  ++ F 
Sbjct: 396 ------------LLAKNLSFNITEDELKEVFED-----AMEIRLVSQDGKSKGIAYIEFK 438

Query: 366 TIQDAXAALQAMDGVELDGRPLRL 437
           +  DA   L+   G E+DGR + L
Sbjct: 439 SEADAEKNLEEKQGAEIDGRSVSL 462

---

>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 32/80 (40%), Positives = 50/80 (62%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           D  Y+ + G L W    + L+ AF     ++ ++VI +R+TGRSRGFGFV+F + Q    
Sbjct: 5   DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLD 64

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A++ M+G ELDGR + ++ A
Sbjct: 65  AIENMNGKELDGRNITVNQA 84



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 152
           D+ T RSRGF FVT ++ +    A++  NG  L GR + VN  +   GG
Sbjct: 42  DRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGG 90

---

>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 31/80 (38%), Positives = 50/80 (62%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           D  Y+ + G L W    ++L+ AF     ++ ++VI +R+TGRSRGFGFV+F +      
Sbjct: 5   DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A++ M+G ELDGR + ++ A
Sbjct: 65  AIENMNGKELDGRNITVNQA 84



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 152
           D+ T RSRGF FVT ++      A++  NG  L GR + VN  +   GG
Sbjct: 42  DRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSRGGG 90

---

>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 39/151 (25%), Positives = 71/151 (47%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D+ + RS+G A+V     +    A+ +    LLG        P + +  +          
Sbjct: 200 DRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLG-------VPIIVQASQAEKNRLAAMA 252

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                 + G  ++Y G+L + +  D L+  FE    +    ++ + DTGRS+G+GF++F 
Sbjct: 253 NNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFS 312

Query: 366 TIQDAXAALQAMDGVELDGRPLRLSLAAQNL 458
             + A  AL+ ++G EL GRP+R+    + L
Sbjct: 313 DSECARRALEQLNGFELAGRPMRVGHVTERL 343



 Score = 32.0 bits (71), Expect = 0.79
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           V+   L   +R   L+  F     +   R+I +R++ RS+G  +V F  IQ    A+  +
Sbjct: 168 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GL 226

Query: 402 DGVELDGRPL----------RLSLAAQNLQ 461
            G  L G P+          RL+  A NLQ
Sbjct: 227 TGQRLLGVPIIVQASQAEKNRLAAMANNLQ 256

---

>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 32/80 (40%), Positives = 50/80 (62%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           D  Y+ + G L W     +L+TAF     LV +++I +R+TGRSRGFGFV+F   +    
Sbjct: 5   DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A++ M+G +LDGR + ++ A
Sbjct: 65  AIEGMNGQDLDGRSITVNEA 84



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T RSRGF FVT    +    A++  NG  L GR++ VN
Sbjct: 42  DRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVN 82

---

>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 31/80 (38%), Positives = 50/80 (62%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           D  Y+ + G L W     AL+TAF     ++ +++I +R+TGRSRGFGFV+F   +    
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A++ M+G +LDGR + ++ A
Sbjct: 65  AIEGMNGQDLDGRSITVNEA 84



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T RSRGF FVT    +    A++  NG  L GR++ VN
Sbjct: 42  DRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82

---

>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 31/80 (38%), Positives = 50/80 (62%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           D  Y+ + G L W     AL+TAF     ++ +++I +R+TGRSRGFGFV+F   +    
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A++ M+G +LDGR + ++ A
Sbjct: 65  AIEGMNGQDLDGRSITVNEA 84



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T RSRGF FVT    +    A++  NG  L GR++ VN
Sbjct: 42  DRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVN 82

---

>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE--VPRGGEXXXXXXXXXXX 188
           T RSRGF FV     EEA KAV   NG  + GR + V   +  + R GE           
Sbjct: 227 TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQE 286

Query: 189 XXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHT 368
                      +Y  NL  G+  D L+  F     +  A+V+ E   G S+GFGFV F +
Sbjct: 287 RINRYQG--VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSS 342

Query: 369 IQDAXAALQAMDGVELDGRPLRLSLA 446
            ++A  A+  M+G  +  +PL ++LA
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368



 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 45/146 (30%), Positives = 68/146 (46%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           SRG+ FV   T E A +A+Q  NG LL  R V V   +  R  E                
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFT----- 191

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  N G  +    L+  F      +  +V+ + DTGRSRGFGFV++   ++A 
Sbjct: 192 -----NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQ 245

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A+  M+G E++GR + +  A + ++
Sbjct: 246 KAVSEMNGKEVNGRMIYVGRAQKRIE 271



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 37/140 (26%), Positives = 61/140 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  T RS G+A++      +A +A+   N  ++ GR +R+ + +   G            
Sbjct: 45  DIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPG------------ 92

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   V+  NL   +   AL   F     ++  +V+   D   SRG+GFV F 
Sbjct: 93  ----LRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC--DEHGSRGYGFVHFE 146

Query: 366 TIQDAXAALQAMDGVELDGR 425
           T + A  A+Q M+G+ L+ R
Sbjct: 147 TQEAANRAIQTMNGMLLNDR 166

---

>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 41/140 (29%), Positives = 64/140 (45%)
 Frame = +3

Query: 33  FAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG 212
           + FV       AA A+   NG  + G+ V+VN+   P   +                   
Sbjct: 48  YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRS---QN 104

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
            + V+ G+L   +  + +K AF     +  ARV+ +  TG+S+G+GFVSF    DA  A+
Sbjct: 105 HFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164

Query: 393 QAMDGVELDGRPLRLSLAAQ 452
           Q M G  L GR +R + A +
Sbjct: 165 QQMGGQWLGGRQIRTNWATR 184



 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXXXXX 173
           D  T +S+G+ FV+     +A  A+Q   G  LGGR +R N+    P  P+         
Sbjct: 140 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 199

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                           VY G +  G+    ++  F     ++  RV         +G+ F
Sbjct: 200 LSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSF 253

Query: 354 VSFHTIQDAXAALQAMDGVELDGRPLR 434
           V F++ + A  A+ +++G  ++G  ++
Sbjct: 254 VRFNSHESAAHAIVSVNGTTIEGHVVK 280



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D+    +Y GNL   V    +   F         ++I   DT  +  + FV FH  + A 
Sbjct: 3   DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAA 60

Query: 384 AALQAMDGVELDGRPLRLSLA 446
           AAL AM+G ++ G+ ++++ A
Sbjct: 61  AALAAMNGRKIMGKEVKVNWA 81

---

>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 36/144 (25%), Positives = 68/144 (47%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D+ + RSRG A+V          A+ +    +LG        P + +  +          
Sbjct: 187 DRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLG-------VPIIVQASQAEKNRAAAMA 239

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G  ++Y G+L + +  D L+  FE    +   +++ + +TGRS+G+GF++F 
Sbjct: 240 NNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFS 299

Query: 366 TIQDAXAALQAMDGVELDGRPLRL 437
             + A  AL+ ++G EL GRP+++
Sbjct: 300 DSECAKKALEQLNGFELAGRPMKV 323

---

>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 41/140 (29%), Positives = 64/140 (45%)
 Frame = +3

Query: 33  FAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG 212
           + FV       AA A+   NG  + G+ V+VN+   P   +                   
Sbjct: 48  YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDH-- 105

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
            + V+ G+L   +  + +K AF     +  ARV+ +  TG+S+G+GFVSF    DA  A+
Sbjct: 106 -FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164

Query: 393 QAMDGVELDGRPLRLSLAAQ 452
           Q M G  L GR +R + A +
Sbjct: 165 QQMGGQWLGGRQIRTNWATR 184



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 4/147 (2%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXXXXX 173
           D  T +S+G+ FV+     +A  A+Q   G  LGGR +R N+    P  P+         
Sbjct: 140 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 199

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                           VY G +  G+    ++  F     ++  RV         +G+ F
Sbjct: 200 LSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSF 253

Query: 354 VSFHTIQDAXAALQAMDGVELDGRPLR 434
           V F + + A  A+ +++G  ++G  ++
Sbjct: 254 VRFSSHESAAHAIVSVNGTTIEGHVVK 280



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D+    +Y GNL   V    +   F         ++I   DT  +  + FV FH  + A 
Sbjct: 3   DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAA 60

Query: 384 AALQAMDGVELDGRPLRLSLA 446
           AAL AM+G ++ G+ ++++ A
Sbjct: 61  AALAAMNGRKIMGKEVKVNWA 81

---

>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 42/135 (31%), Positives = 64/135 (47%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+G+ FV  A  E A KA++  NG LL  + V V  P + R                  
Sbjct: 162 QSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVG-PFLRRQERDSTANKTKFT----- 215

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  VY  NL      D LK AF G+ G + + V+ +   G+S+GFGFV+F    DA
Sbjct: 216 ------NVYVKNLAESTTDDDLKNAF-GEYGKITSAVVMKDGEGKSKGFGFVNFENADDA 268

Query: 381 XAALQAMDGVELDGR 425
             A+++++G + D +
Sbjct: 269 ARAVESLNGHKFDDK 283



 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 36/142 (25%), Positives = 62/142 (43%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV    A++AA+AV+  NG     +   V   +     E               
Sbjct: 253 KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAA 312

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
               +  +Y  NL   +  + LK  F    G V +  +     G S+G GFV+F T ++A
Sbjct: 313 DKFQSSNLYVKNLDPSISDEKLKEIFSPF-GTVTSSKVMRDPNGTSKGSGFVAFATPEEA 371

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A+  + G  ++ +PL +++A
Sbjct: 372 TEAMSQLSGKMIESKPLYVAIA 393



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXXXXX 173
           D +T RS G+ +V     ++AA+A+Q  N   L G+ +RV +    P V R G       
Sbjct: 70  DLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG----- 124

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                           ++  NL   +   AL   F     +V  +V  +  +G+S+G+GF
Sbjct: 125 ---------------NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGF 168

Query: 354 VSFHTIQDAXAALQAMDGVELDGR 425
           V +   + A  A++ ++G+ L+ +
Sbjct: 169 VQYANEESAQKAIEKLNGMLLNDK 192



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 29/101 (28%), Positives = 45/101 (44%)
 Frame = +3

Query: 135 EVPRGGEXXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVI 314
           + P G                    G   +Y G+L + V    L  AF     +V  RV 
Sbjct: 9   QTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVC 68

Query: 315 FERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRL 437
            +  T RS G+G+V+F   QDA  A+Q ++ + L G+P+R+
Sbjct: 69  RDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRV 109

---

>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 29/77 (37%), Positives = 48/77 (62%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
           Y+ + G L W    ++L+ AF     +  +++I +R+TGRSRGFGFV+F   +    A++
Sbjct: 6   YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65

Query: 396 AMDGVELDGRPLRLSLA 446
            M+G ELDGR + ++ A
Sbjct: 66  GMNGQELDGRNITVNEA 82



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 28/101 (27%), Positives = 38/101 (37%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D+ T RSRGF FVT    +    A++  NG  L GR + VN  +    G           
Sbjct: 40  DRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGG 99

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGAR 308
                   G  +   G  G+G R +     + G  G  G R
Sbjct: 100 GYGGGGGYGGRREGGGGGGYGGRREGGGGGYGGGGGGYGGR 140

---

>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 35/144 (24%), Positives = 68/144 (47%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D+ + RS+G A+V          A+ +    +LG        P + +  +          
Sbjct: 187 DRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLG-------VPIIVQASQAEKNRAAAMA 239

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G  ++Y G+L + +  D L+  FE    +   +++ + +TGRS+G+GF++F 
Sbjct: 240 NNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFS 299

Query: 366 TIQDAXAALQAMDGVELDGRPLRL 437
             + A  AL+ ++G EL GRP+++
Sbjct: 300 DSECAKKALEQLNGFELAGRPMKV 323

---

>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 44/146 (30%), Positives = 68/146 (46%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           SRG+ FV   T E A +A+Q  NG LL  R V V   +  R  E                
Sbjct: 137 SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFT----- 191

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  N G  +    L+  F      +  +V+ + D+GRSRGFGFV++   ++A 
Sbjct: 192 -----NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQ 245

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A+  M+G E++GR + +  A + ++
Sbjct: 246 KAVSEMNGKEVNGRMIYVGRAQKRIE 271



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 44/142 (30%), Positives = 64/142 (45%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           RSRGF FV     EEA KAV   NG  + GR + V   +     +               
Sbjct: 229 RSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERI 288

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL  G+  D L+  F     +  A+V+ E   G S+GFGFV F + ++A
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEA 346

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A+  M+G  +  +PL ++LA
Sbjct: 347 TKAVTEMNGRIVSTKPLYVALA 368



 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 36/140 (25%), Positives = 60/140 (42%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  T RS  +A++      +A +A+   N  ++ GR +R+ + +   G            
Sbjct: 45  DIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPG------------ 92

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   V+  NL   +   AL   F     ++  +V+   D   SRG+GFV F 
Sbjct: 93  ----LRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC--DEHGSRGYGFVHFE 146

Query: 366 TIQDAXAALQAMDGVELDGR 425
           T + A  A+Q M+G+ L+ R
Sbjct: 147 THEAANRAIQTMNGMLLNDR 166

---

>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE--VPRGGEXXXXXXXXXXXXX 194
           RSRGF FV     EEA KAV   NG  + GR V V   +  + R GE             
Sbjct: 229 RSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERI 288

Query: 195 XXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQ 374
                    +Y  NL  G+  D L+  F     +   +V+ E   G S+GFGFV F + +
Sbjct: 289 NRYQG--VNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPE 344

Query: 375 DAXAALQAMDGVELDGRPLRLSLA 446
           +A  A+  M+G  +  +PL ++LA
Sbjct: 345 EATKAVTEMNGRIVSTKPLYVALA 368



 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 44/146 (30%), Positives = 68/146 (46%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           SRG+ FV   T E A +A+Q  NG LL  R V V   +  R  E                
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFT----- 191

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  N G  +    LK  F      +  +V+ + ++GRSRGFGFV++   ++A 
Sbjct: 192 -----NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQ 245

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A+  M+G E++GR + +  A + ++
Sbjct: 246 KAVTEMNGKEVNGRMVYVGRAQKRIE 271

---

>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 44/146 (30%), Positives = 70/146 (47%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           S+G+ FV   T E A +A++  NG LL GR V V   +  +  E                
Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP----- 191

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  N G  +  + LK  F G+ G   +  +   ++G+S+GFGFVSF   +DA 
Sbjct: 192 -----NVYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A+  M+G EL+G+ + +  A + ++
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVE 271



 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 42/142 (29%), Positives = 67/142 (47%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV+    E+A KAV   NG  L G+ + V   +     +               
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRI 288

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL  G+  + L+ AF     +  A+V+ E   GRS+GFGFV F + ++A
Sbjct: 289 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A+  M+G  +  +PL ++LA
Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 33/140 (23%), Positives = 58/140 (41%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D IT  S  +A+V     ++A  A+   N  ++ G+ VR+ + +                
Sbjct: 45  DLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQ---------------- 88

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL         ++   V+   D   S+G+GFV F 
Sbjct: 89  RDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC--DENGSKGYGFVHFE 146

Query: 366 TIQDAXAALQAMDGVELDGR 425
           T + A  A++ M+G+ L+GR
Sbjct: 147 THEAAERAIKKMNGMLLNGR 166

---

>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 45/146 (30%), Positives = 67/146 (45%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           S+G+ FV   T E A +A+   NG LL  R V V   +  +  E                
Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 191

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  N G  +  + LK  F GQ G   +  +   D G+SRGFGFVSF   +DA 
Sbjct: 192 -----NVYIKNFGEDMDDERLKEWF-GQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQ 245

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A+  M+G +L+G+ + +  A + ++
Sbjct: 246 KAVDDMNGKDLNGKAIFVGRAQKKVE 271



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 42/142 (29%), Positives = 66/142 (46%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +SRGF FV+    E+A KAV   NG  L G+ + V   +     +               
Sbjct: 229 KSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRI 288

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL  G+  + L+  F     +  A+V+ E   GRS+GFGFV F + ++A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEA 346

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A+  M+G  +  +PL ++LA
Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 35/140 (25%), Positives = 60/140 (42%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D IT RS G+A+V      +A +A+   N  ++ G+ VR+ + +                
Sbjct: 45  DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---------------- 88

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+   D   S+G+GFV F 
Sbjct: 89  RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146

Query: 366 TIQDAXAALQAMDGVELDGR 425
           T + A  A+  M+G+ L+ R
Sbjct: 147 TQEAAERAIDKMNGMLLNDR 166

---

>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 32/84 (38%), Positives = 50/84 (59%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D+G  K++ G L +    D L+ AF     +    V+ +R+T RSRGFGFV+F  + DA 
Sbjct: 3   DEG--KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60

Query: 384 AALQAMDGVELDGRPLRLSLAAQN 455
            A+ AM+G  +DGR +R+  A ++
Sbjct: 61  DAMMAMNGKSVDGRQIRVDQAGKS 84



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T RSRGF FVT    ++A  A+   NG  + GR +RV+
Sbjct: 39  DRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVD 79

---

>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 33/78 (42%), Positives = 45/78 (57%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
           T  V+ G L W V    L   FE    +VGARVI +  +GRS+G+G+V F T + A AA+
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321

Query: 393 QAMDGVELDGRPLRLSLA 446
            A    E+DGR + L L+
Sbjct: 322 AANGTKEIDGRMVNLDLS 339



 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 42/147 (28%), Positives = 65/147 (44%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  + RS+G+ +V   T E A  AV       + GR V ++    PR             
Sbjct: 297 DGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN-PRPANPQPYAQQRAG 355

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                  + +  V+ GNL +    D L TAF G   +   R+  +  +GR +GFG+V+F 
Sbjct: 356 NFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415

Query: 366 TIQDAXAALQAMDGVELDGRPLRLSLA 446
            I  A   ++ M+G  + GRP RL  +
Sbjct: 416 DIDSAKKCVE-MNGHFIAGRPCRLDFS 441

---

>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 43/146 (29%), Positives = 69/146 (47%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           S+G+ FV   T E A +A++  NG LL  R V V   +  +  E                
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFT----- 191

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  N G  +  + LK  F G+ G   +  +   ++G+S+GFGFVSF   +DA 
Sbjct: 192 -----NVYIKNFGEDMDDERLKELF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A+  M+G EL+G+ + +  A + ++
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVE 271



 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 41/142 (28%), Positives = 66/142 (46%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV+    E+A KAV   NG  L G+ + V   +     +               
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 288

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL  G+  + L+  F     +  A+V+ E   GRS+GFGFV F + ++A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A+  M+G  +  +PL ++LA
Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 35/140 (25%), Positives = 61/140 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D IT RS G+A+V      +A +A+   N  ++ G+ VR+ + +                
Sbjct: 45  DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---------------- 88

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+   D   S+G+GFV F 
Sbjct: 89  RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146

Query: 366 TIQDAXAALQAMDGVELDGR 425
           T + A  A++ M+G+ L+ R
Sbjct: 147 TQEAAERAIEKMNGMLLNDR 166

---

>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 40/140 (28%), Positives = 66/140 (47%)
 Frame = +3

Query: 33  FAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG 212
           + FV      +AA A+   NG  + G+ V+VN+   P   +                   
Sbjct: 67  YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNH------------- 113

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
            + V+ G+L   +  + +K+AF     +  ARV+ +  TG+S+G+GFVSF+   DA  A+
Sbjct: 114 -FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 172

Query: 393 QAMDGVELDGRPLRLSLAAQ 452
             M G  L GR +R + A +
Sbjct: 173 VHMGGQWLGGRQIRTNWATR 192



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXXXXX 173
           D  T +S+G+ FV+     +A  A+    G  LGGR +R N+    P  P+  +      
Sbjct: 148 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQ 207

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                           VY G +  G+    ++  F     ++  RV  E      +G+ F
Sbjct: 208 LRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSF 261

Query: 354 VSFHTIQDAXAALQAMDGVELDGRPLR 434
           V F T + A  A+ +++G  ++G  ++
Sbjct: 262 VRFSTHESAAHAIVSVNGTTIEGHVVK 288

---

>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 40/140 (28%), Positives = 66/140 (47%)
 Frame = +3

Query: 33  FAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG 212
           + FV      +AA A+   NG  + G+ V+VN+   P   +                   
Sbjct: 50  YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNH------------- 96

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
            + V+ G+L   +  + +K+AF     +  ARV+ +  TG+S+G+GFVSF+   DA  A+
Sbjct: 97  -FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 155

Query: 393 QAMDGVELDGRPLRLSLAAQ 452
             M G  L GR +R + A +
Sbjct: 156 VHMGGQWLGGRQIRTNWATR 175



 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXXXXX 173
           D  T +S+G+ FV+     +A  A+    G  LGGR +R N+    P  P+  +      
Sbjct: 131 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQ 190

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                           VY G +  G+    ++  F     ++  RV  E      +G+ F
Sbjct: 191 LRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSF 244

Query: 354 VSFHTIQDAXAALQAMDGVELDGRPLR 434
           V F T + A  A+ +++G  ++G  ++
Sbjct: 245 VRFSTHESAAHAIVSVNGTTIEGHVVK 271

---

>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 32/84 (38%), Positives = 49/84 (58%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D+G  K++ G L +     AL+  F     +    V+ +R+T RSRGFGFV+F  I DA 
Sbjct: 4   DEG--KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 384 AALQAMDGVELDGRPLRLSLAAQN 455
            A+ AM+G  +DGR +R+  A ++
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQAGKS 85



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T RSRGF FVT    ++A  A+   NG  + GR +RV+
Sbjct: 40  DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80

---

>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 32/84 (38%), Positives = 49/84 (58%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D+G  K++ G L +     AL+  F     +    V+ +R+T RSRGFGFV+F  I DA 
Sbjct: 4   DEG--KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 384 AALQAMDGVELDGRPLRLSLAAQN 455
            A+ AM+G  +DGR +R+  A ++
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQAGKS 85



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T RSRGF FVT    ++A  A+   NG  + GR +RV+
Sbjct: 40  DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80

---

>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 32/84 (38%), Positives = 49/84 (58%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D+G  K++ G L +     AL+  F     +    V+ +R+T RSRGFGFV+F  I DA 
Sbjct: 4   DEG--KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 384 AALQAMDGVELDGRPLRLSLAAQN 455
            A+ AM+G  +DGR +R+  A ++
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQAGKS 85



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T RSRGF FVT    ++A  A+   NG  + GR +RV+
Sbjct: 40  DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80

---

>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 43/146 (29%), Positives = 69/146 (47%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           S+G+ FV   T E A +A++  NG LL  R V V   +  +  E                
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 191

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  N G  +  + LK  F G+ G   +  +   ++G+S+GFGFVSF   +DA 
Sbjct: 192 -----NVYIKNFGEDMDDERLKELF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A+  M+G EL+G+ + +  A + ++
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVE 271



 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 41/142 (28%), Positives = 66/142 (46%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV+    E+A KAV   NG  L G+ + V   +     +               
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 288

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL  G+  + L+  F     +  A+V+ E   GRS+GFGFV F + ++A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A+  M+G  +  +PL ++LA
Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 35/140 (25%), Positives = 61/140 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D IT RS G+A+V      +A +A+   N  ++ G+ VR+ + +                
Sbjct: 45  DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---------------- 88

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+   D   S+G+GFV F 
Sbjct: 89  RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146

Query: 366 TIQDAXAALQAMDGVELDGR 425
           T + A  A++ M+G+ L+ R
Sbjct: 147 TQEAAERAIEKMNGMLLNDR 166

---

>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 43/146 (29%), Positives = 69/146 (47%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           S+G+ FV   T E A +A++  NG LL  R V V   +  +  E                
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 191

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  N G  +  + LK  F G+ G   +  +   ++G+S+GFGFVSF   +DA 
Sbjct: 192 -----NVYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A+  M+G EL+G+ + +  A + ++
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVE 271



 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 41/142 (28%), Positives = 66/142 (46%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV+    E+A KAV   NG  L G+ + V   +     +               
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 288

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL  G+  + L+  F     +  A+V+ E   GRS+GFGFV F + ++A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A+  M+G  +  +PL ++LA
Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 35/140 (25%), Positives = 61/140 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D IT RS G+A+V      +A +A+   N  ++ G+ VR+ + +                
Sbjct: 45  DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---------------- 88

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+   D   S+G+GFV F 
Sbjct: 89  RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146

Query: 366 TIQDAXAALQAMDGVELDGR 425
           T + A  A++ M+G+ L+ R
Sbjct: 147 TQEAAERAIEKMNGMLLNDR 166

---

>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 43/146 (29%), Positives = 69/146 (47%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           S+G+ FV   T E A +A++  NG LL  R V V   +  +  E                
Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 191

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  N G  +  + LK  F G+ G   +  +   ++G+S+GFGFVSF   +DA 
Sbjct: 192 -----NVYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A+  M+G EL+G+ + +  A + ++
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVE 271



 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 41/142 (28%), Positives = 66/142 (46%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV+    E+A KAV   NG  L G+ + V   +     +               
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 288

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL  G+  + L+  F     +  A+V+ E   GRS+GFGFV F + ++A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A+  M+G  +  +PL ++LA
Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 35/140 (25%), Positives = 61/140 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D IT RS G+A+V      +A +A+   N  ++ G+ VR+ + +                
Sbjct: 45  DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---------------- 88

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+   D   S+G+GFV F 
Sbjct: 89  RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146

Query: 366 TIQDAXAALQAMDGVELDGR 425
           T + A  A++ M+G+ L+ R
Sbjct: 147 TQEAAERAIEKMNGMLLNDR 166

---

>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 32/76 (42%), Positives = 48/76 (63%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K+Y G L  G    +LK AF    G+  ARV+  + TGRSRG+GFV+F +   A +A+ A
Sbjct: 32  KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91

Query: 399 MDGVELDGRPLRLSLA 446
           M+G EL+G  + +++A
Sbjct: 92  MNGQELNGFNISVNVA 107



 Score = 36.6 bits (83), Expect = 0.032
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN----FPEVP 143
           +K+T RSRG+ FV   + + A  A+   NG  L G  + VN    +P +P
Sbjct: 65  NKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLP 114

---

>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 44/146 (30%), Positives = 68/146 (46%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           S+G+AFV   T E A KA++  NG LL  R V V   +  +  E                
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----- 191

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  N G  V  ++LK  F  Q G   +  +     G+S+GFGFVS+   +DA 
Sbjct: 192 -----NVYIKNFGEEVDDESLKELFS-QFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDAN 245

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A++ M+G E+ G+ + +  A + ++
Sbjct: 246 KAVEEMNGKEISGKIIFVGRAQKKVE 271



 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 39/142 (27%), Positives = 66/142 (46%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV+    E+A KAV+  NG  + G+ + V   +     +               
Sbjct: 229 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERI 288

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL   +  + L+  F     +  A+V+ E   GRS+GFGFV F + ++A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEA 346

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A+  M+G  +  +PL ++LA
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALA 368



 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 34/140 (24%), Positives = 60/140 (42%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D IT RS G+A+V      +A +A+   N  ++ G+ +R+ + +                
Sbjct: 45  DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQ---------------- 88

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   V+  NL   +   AL   F     ++  +V+   D   S+G+ FV F 
Sbjct: 89  RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFE 146

Query: 366 TIQDAXAALQAMDGVELDGR 425
           T + A  A++ M+G+ L+ R
Sbjct: 147 TQEAADKAIEKMNGMLLNDR 166

---

>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 42/146 (28%), Positives = 67/146 (45%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           S+G+ FV   T E A +A+   NG LL  R V V   +  +  E                
Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 191

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  N G  +  + LK  F G+ G   +  +   D G+S+GFGFVSF   +DA 
Sbjct: 192 -----NVYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQ 245

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A+  M+G +++G+ + +  A + ++
Sbjct: 246 KAVDEMNGKDMNGKSMFVGRAQKKVE 271



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 40/142 (28%), Positives = 67/142 (47%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV+    E+A KAV   NG  + G+++ V   +     +               
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRI 288

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL  G+  + L+  F     +  A+V+ E   GRS+GFGFV F + ++A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A+  M+G  +  +PL ++LA
Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368



 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 36/140 (25%), Positives = 60/140 (42%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D IT RS G+A+V      +A +A+   N  ++ GR VR+ + +                
Sbjct: 45  DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQ---------------- 88

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+   D   S+G+GFV F 
Sbjct: 89  RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146

Query: 366 TIQDAXAALQAMDGVELDGR 425
           T + A  A+  M+G+ L+ R
Sbjct: 147 TQEAAERAIDKMNGMLLNDR 166

---

>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLG-GRTVRVNFPEVPRGGEXXXXXXXXXXXXXX 197
           +S+GF FV   T E A  AVQ  NG  +G G+++ V      +  E              
Sbjct: 221 KSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV--ARAQKKAERQQELKRKFEELKQ 278

Query: 198 XXDDGTYKV--YAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 371
              +  + V  Y  NL   +  D L+ AF     +  A+V+ + + GRS+GFGFV F+  
Sbjct: 279 KRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAA 337

Query: 372 QDAXAALQAMDGVELDGRPLRLSLA 446
            +A  A+  ++G  +  +PL ++LA
Sbjct: 338 SEATCAVTELNGRVVGSKPLYVALA 362



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 3/149 (2%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN--FPEVPRGGEXXXXXXXXXXXXXX 197
           S+G+ FV   T E A  ++   NG LL G+ V V    P   R  E              
Sbjct: 129 SKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFT----- 183

Query: 198 XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQD 377
                   VY  N       + LK  FE    +   +V+ + D G+S+GFGFV+F T + 
Sbjct: 184 -------NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED-GKSKGFGFVAFETTEA 235

Query: 378 AXAALQAMDGVEL-DGRPLRLSLAAQNLQ 461
           A AA+QA++G ++ +G+ L ++ A +  +
Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARAQKKAE 264



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 32/140 (22%), Positives = 61/140 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D IT RS G+A+V      +A +A+   N  L+  + +R+ + +                
Sbjct: 36  DVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQ---------------- 79

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   V+  NL   +   A+   F     ++  +V  + + G S+G+GFV F 
Sbjct: 80  RDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFE 138

Query: 366 TIQDAXAALQAMDGVELDGR 425
           T + A  ++  ++G+ L+G+
Sbjct: 139 TEEAANTSIDKVNGMLLNGK 158

---

>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 31/84 (36%), Positives = 49/84 (58%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D+G  K++ G L +     +L+  F     +    V+ +R+T RSRGFGFV+F  I DA 
Sbjct: 4   DEG--KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 384 AALQAMDGVELDGRPLRLSLAAQN 455
            A+ AM+G  +DGR +R+  A ++
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQAGKS 85



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T RSRGF FVT    ++A  A+   NG  + GR +RV+
Sbjct: 40  DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80

---

>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 31/84 (36%), Positives = 49/84 (58%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D+G  K++ G L +     +L+  F     +    V+ +R+T RSRGFGFV+F  I DA 
Sbjct: 4   DEG--KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61

Query: 384 AALQAMDGVELDGRPLRLSLAAQN 455
            A+ AM+G  +DGR +R+  A ++
Sbjct: 62  DAMMAMNGKSVDGRQIRVDQAGKS 85



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T RSRGF FVT    ++A  A+   NG  + GR +RV+
Sbjct: 40  DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80

---

>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 27/77 (35%), Positives = 47/77 (61%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
           Y+ + G L W    + L+  F     ++ +++I +R++GRSRGFGFV+F   +    A++
Sbjct: 6   YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65

Query: 396 AMDGVELDGRPLRLSLA 446
            M+G ELDGR + ++ A
Sbjct: 66  EMNGKELDGRVITVNEA 82



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ + RSRGF FVT    +    A++  NG  L GR + VN
Sbjct: 40  DRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80

---

>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 28/77 (36%), Positives = 45/77 (58%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
           Y+ + G L W      L+  F     ++ +++I +R+TGRSRGFGFV+F   +    A+ 
Sbjct: 6   YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65

Query: 396 AMDGVELDGRPLRLSLA 446
            M+G ELDGR + ++ A
Sbjct: 66  EMNGKELDGRTITVNEA 82



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/49 (42%), Positives = 26/49 (53%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 152
           D+ T RSRGF FVT    +    A+   NG  L GRT+ VN  +   GG
Sbjct: 40  DRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGGG 88

---

>SAP49_SCHPO (O14102) Spliceosome-associated protein 49|
          Length = 335

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 40/147 (27%), Positives = 63/147 (42%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D++ +   GF F      ++   A Q+ N   L G+ +RVN     RG            
Sbjct: 45  DRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGA----- 99

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       ++ GNL   V    L   F     LV A  +   + GRS+G+GFVS+ 
Sbjct: 100 -----------NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYD 148

Query: 366 TIQDAXAALQAMDGVELDGRPLRLSLA 446
           + + A AA++AM+   L  +P+ +S A
Sbjct: 149 SFETADAAIEAMNNQFLMNKPITVSYA 175



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 24/78 (30%), Positives = 37/78 (47%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y GNL   V    L         +V   +  +R      GFGF  F   QD   A Q +
Sbjct: 13  IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72

Query: 402 DGVELDGRPLRLSLAAQN 455
           + V+L G+P+R++ A+Q+
Sbjct: 73  NQVKLFGKPIRVNRASQD 90

---

>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I|
          Length = 219

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 30/86 (34%), Positives = 50/86 (58%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D   ++++ GNLG  V  ++L  AF   P LV  +V+ +R+ G++RGFGFVSF       
Sbjct: 26  DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84

Query: 384 AALQAMDGVELDGRPLRLSLAAQNLQ 461
            A +  +G  +  RP++LS A  +++
Sbjct: 85  KAWREKNGKYIGSRPVKLSRATSDVK 110



 Score = 28.9 bits (63), Expect = 6.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           ++RGF FV+   +++  KA +  NG  +G R V+++
Sbjct: 68  KTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLS 103

---

>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D++T + +G+ FV   + E+A  A+++ N   L G+ +RVN                   
Sbjct: 47  DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN----------------KAS 90

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGA-RVIFERDTGRSRGFGFVSF 362
                 D G   ++ GNL   +    L   F     ++   +++ + DTG S+G+ F++F
Sbjct: 91  AHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLA 446
            +   + AA++AM+G  L  RP+ +S A
Sbjct: 150 ASFDASDAAIEAMNGQYLCNRPITVSYA 177



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 25/76 (32%), Positives = 43/76 (56%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           VY G L   V    L   F     +V   +  +R TG+ +G+GFV F + +DA  A++ M
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query: 402 DGVELDGRPLRLSLAA 449
           + ++L G+P+R++ A+
Sbjct: 75  NMIKLYGKPIRVNKAS 90

---

>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 28/79 (35%), Positives = 46/79 (58%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +     AL+  F     +    V+ +R+T RSRGFGF++F   + A  A++A
Sbjct: 7   KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66

Query: 399 MDGVELDGRPLRLSLAAQN 455
           M+G  LDGR +R+  A ++
Sbjct: 67  MNGESLDGRQIRVDHAGKS 85



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T RSRGF F+T    E A+ A++  NG  L GR +RV+
Sbjct: 40  DRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVD 80

---

>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 31/80 (38%), Positives = 42/80 (52%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           +G   +   NL +    D L+  FE    +    +  +R T  SRGF FV FH  +DA  
Sbjct: 10  EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A+ AMDG  LDGR LR+ +A
Sbjct: 70  AMDAMDGAVLDGRELRVQMA 89



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           D+ T  SRGFAFV      +A  A+   +GA+L GR +RV      R
Sbjct: 47  DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 93

---

>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 31/80 (38%), Positives = 42/80 (52%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           +G   +   NL +    D L+  FE    +    +  +R T  SRGF FV FH  +DA  
Sbjct: 10  EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A+ AMDG  LDGR LR+ +A
Sbjct: 70  AMDAMDGAVLDGRELRVQMA 89



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           D+ T  SRGFAFV      +A  A+   +GA+L GR +RV      R
Sbjct: 47  DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 93

---

>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein) (Putative myelin regulatory factor 1) (MRF-1)
          Length = 220

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 31/80 (38%), Positives = 42/80 (52%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           +G   +   NL +    D L+  FE    +    +  +R T  SRGF FV FH  +DA  
Sbjct: 10  EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A+ AMDG  LDGR LR+ +A
Sbjct: 70  AMDAMDGAVLDGRELRVQMA 89



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           D+ T  SRGFAFV      +A  A+   +GA+L GR +RV      R
Sbjct: 47  DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 93

---

>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 220

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 31/80 (38%), Positives = 42/80 (52%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           +G   +   NL +    D L+  FE    +    +  +R T  SRGF FV FH  +DA  
Sbjct: 10  EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A+ AMDG  LDGR LR+ +A
Sbjct: 70  AMDAMDGAVLDGRELRVQMA 89



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           D+ T  SRGFAFV      +A  A+   +GA+L GR +RV      R
Sbjct: 47  DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 93

---

>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
 Frame = +3

Query: 12  ITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXX 191
           +T RS+G+ FV     E A  A+   NG L+  + V V                      
Sbjct: 171 VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGH---------------FIRRQ 215

Query: 192 XXXXDDGT-----YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 356
               D+ T       VY  NL   +  D L+  F G+ G++ + V+    +G SR FGFV
Sbjct: 216 ERARDENTPTPRFTNVYVKNLPKEIGEDELRKTF-GKFGVISSAVVMRDQSGNSRCFGFV 274

Query: 357 SFHTIQDAXAALQAMDGVEL 416
           +F   + A +A++ M+G+ L
Sbjct: 275 NFECTEAAASAVEKMNGISL 294



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 41/141 (29%), Positives = 59/141 (41%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           SR F FV     E AA AV+  NG  LG   + V   +     E                
Sbjct: 268 SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFE 327

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 +Y  NL   V  + LK  F     +  ++V+     G SRGFGFV++   ++A 
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386

Query: 384 AALQAMDGVELDGRPLRLSLA 446
            AL  M+G  +  +PL ++LA
Sbjct: 387 RALSEMNGKMIGRKPLYIALA 407



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 30/135 (22%), Positives = 57/135 (42%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           RS G+A++  +   +A +A++  N   L  R +R+                         
Sbjct: 87  RSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLS------------- 133

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
              G   ++  NL   +   AL   F     ++  +V  +  TGRS+G+GFV F   + A
Sbjct: 134 ---GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESA 189

Query: 381 XAALQAMDGVELDGR 425
            AA+  ++G+ ++ +
Sbjct: 190 QAAIDKLNGMLMNDK 204

---

>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 221

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 31/80 (38%), Positives = 42/80 (52%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           +G   +   NL +    D L+  FE    +    +  +R T  SRGF FV FH  +DA  
Sbjct: 11  EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A+ AMDG  LDGR LR+ +A
Sbjct: 71  AMDAMDGAVLDGRELRVQMA 90



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           D+ T  SRGFAFV      +A  A+   +GA+L GR +RV      R
Sbjct: 48  DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94

---

>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 55.1 bits (131), Expect = 9e-08
 Identities = 28/79 (35%), Positives = 46/79 (58%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +     AL+  F     +    V+ +R+T RSRGFGF++F   + A  A++A
Sbjct: 7   KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66

Query: 399 MDGVELDGRPLRLSLAAQN 455
           M+G  LDGR +R+  A ++
Sbjct: 67  MNGESLDGRQIRVDHAGKS 85



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T RSRGF F+T    E A+ A++  NG  L GR +RV+
Sbjct: 40  DRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVD 80

---

>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly|
           U-binding splicing factor) (Protein half pint) (PUF60
           homolog)
          Length = 637

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFP-EVPRGGEXXXXXXXX 179
           +D IT + +GFAFV     E A  A++  NGAL+GGR ++V  P  +P+  +        
Sbjct: 163 WDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEE 222

Query: 180 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 359
                        ++Y  ++   +  + +K+ FE    ++  ++         +G+GF+ 
Sbjct: 223 AKSFN--------RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIE 274

Query: 360 FHTIQDAXAALQAMDGVELDGRPLRL 437
           +   Q    A+ +M+  +L G+ LR+
Sbjct: 275 YANKQAMDEAIASMNLFDLGGQLLRV 300



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 18/73 (24%), Positives = 40/73 (54%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +VY G++ + ++ D ++ AF     +    + ++  T + +GF FV +   + A  AL+ 
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190

Query: 399 MDGVELDGRPLRL 437
           M+G  + GR +++
Sbjct: 191 MNGALMGGRNIKV 203

---

>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 36/140 (25%), Positives = 61/140 (43%)
 Frame = +3

Query: 27  RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXD 206
           RG+AFV     E+A +A +  NG   G + + V   +     E                 
Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMI 300

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
                +Y  N+   V  + L+  F  Q G + +  +   + G+S+GFGFV F T ++A  
Sbjct: 301 AKVSNIYVKNVNVAVTEEELRKHFS-QCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAID 359

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A++   G    G+PL +++A
Sbjct: 360 AVKTFHGQMFHGKPLYVAIA 379



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 4/137 (2%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXXXXX 173
           D  + RS  + +    + ++A  A++  N +LL G+ +RV +    P+  R         
Sbjct: 58  DASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARR--------- 108

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                      +G   V+  NL   V    L+  F+    +V  +V    D G+SRG+GF
Sbjct: 109 -----------NGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGF 156

Query: 354 VSFHTIQDAXAALQAMD 404
           V F     A AA+Q ++
Sbjct: 157 VQFEQEDAAHAAIQTLN 173



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
           T  +Y G+L   V    L  AF     L   R+  +  +GRS  +G+ +F + QDA  A+
Sbjct: 23  TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82

Query: 393 QAMDGVELDGRPLRL 437
           +  +   L+G+ +R+
Sbjct: 83  EKKNNSLLNGKMIRV 97



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 30/147 (20%), Positives = 58/147 (39%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +SRG+ FV     + A  A+Q  N  ++  + + V                         
Sbjct: 150 KSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVG--------------KFMKKTDRVK 195

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
            ++    +Y  NL   V  D L+  F  + G + +  I + +    RG+ FV+F   +DA
Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKF-AEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254

Query: 381 XAALQAMDGVELDGRPLRLSLAAQNLQ 461
             A + ++G +   + L +  A +  +
Sbjct: 255 RRAAETVNGTKFGSKCLYVGRAQKKAE 281



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 125
           +S+GF FV  +T EEA  AV+ F+G +  G+ + V
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYV 376

---

>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 25/82 (30%), Positives = 46/82 (56%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D     V+ GN+ +    + LK  F     +V  R++++R+TG+ +G+GF  +   + A 
Sbjct: 12  DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

Query: 384 AALQAMDGVELDGRPLRLSLAA 449
           +A++ ++G E  GR LR+  AA
Sbjct: 72  SAMRNLNGREFSGRALRVDNAA 93



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           YD+ T + +G+ F      E A  A++  NG    GR +RV+
Sbjct: 49  YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90

---

>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 25/82 (30%), Positives = 46/82 (56%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D     V+ GN+ +    + LK  F     +V  R++++R+TG+ +G+GF  +   + A 
Sbjct: 12  DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

Query: 384 AALQAMDGVELDGRPLRLSLAA 449
           +A++ ++G E  GR LR+  AA
Sbjct: 72  SAMRNLNGREFSGRALRVDNAA 93



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           YD+ T + +G+ F      E A  A++  NG    GR +RV+
Sbjct: 49  YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90

---

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 40/141 (28%), Positives = 60/141 (42%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           SR F FV   + E AA AV+  NG  LG   + V   +     E                
Sbjct: 264 SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFE 323

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 +Y  NL   V  + LK  F     +   +V+     G SRGFGFV++   ++A 
Sbjct: 324 KLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEAL 382

Query: 384 AALQAMDGVELDGRPLRLSLA 446
            A++ M+G  +  +PL ++LA
Sbjct: 383 LAMKEMNGKMIGRKPLYVALA 403



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 40/135 (29%), Positives = 59/135 (43%)
 Frame = +3

Query: 12  ITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXX 191
           +  RS+G+ FV     E A  A+   NG LL  + V V    V R               
Sbjct: 167 VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGH-FVRRQDRARSESGAVPSFT 225

Query: 192 XXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 371
                     VY  NL   +  D LK  F G+ G + + V+ +  +G SR FGFV+F + 
Sbjct: 226 ---------NVYVKNLPKEITDDELKKTF-GKYGDISSAVVMKDQSGNSRSFGFVNFVSP 275

Query: 372 QDAXAALQAMDGVEL 416
           + A  A++ M+G+ L
Sbjct: 276 EAAAVAVEKMNGISL 290



 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 35/138 (25%), Positives = 61/138 (44%)
 Frame = +3

Query: 12  ITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXX 191
           +T RS G+A+V  A  E+A++A++  N A +  R +R+                      
Sbjct: 80  LTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLS---------- 129

Query: 192 XXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 371
                 G   V+  NL   +   AL   F     ++  +V  +   GRS+G+GFV F   
Sbjct: 130 ------GKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKE 182

Query: 372 QDAXAALQAMDGVELDGR 425
           + A AA+  ++G+ L+ +
Sbjct: 183 ETAQAAIDKLNGMLLNDK 200



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD-TGRSRGFGFVSFHTIQDAXAALQA 398
           +Y G+L   V    L   F     +   RV   RD T RS G+ +V+F   +DA  A+++
Sbjct: 47  LYVGDLDPSVNESHLLDLFNQVAPVHNLRVC--RDLTHRSLGYAYVNFANPEDASRAMES 104

Query: 399 MDGVELDGRPLRLSLA 446
           ++   +  RP+R+ L+
Sbjct: 105 LNYAPIRDRPIRIMLS 120

---

>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 25/58 (43%), Positives = 37/58 (63%)
 Frame = +3

Query: 264 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRL 437
           L+  F     L G  V++++ TGRSRGF FV F  I D+  A++  +G+ELDGR +R+
Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRV 192



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/43 (44%), Positives = 29/43 (67%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           YD+ T RSRGFAFV     +++ +A++  NG  L GR +RV++
Sbjct: 152 YDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 194

---

>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 25/58 (43%), Positives = 37/58 (63%)
 Frame = +3

Query: 264 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRL 437
           L+  F     L G  V++++ TGRSRGF FV F  I D+  A++  +G+ELDGR +R+
Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRV 190



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/43 (44%), Positives = 29/43 (67%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           YD+ T RSRGFAFV     +++ +A++  NG  L GR +RV++
Sbjct: 150 YDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 192

---

>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 25/82 (30%), Positives = 46/82 (56%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D     V+ GN+ +    + LK  F     +V  R++++R+TG+ +G+GF  +   + A 
Sbjct: 12  DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

Query: 384 AALQAMDGVELDGRPLRLSLAA 449
           +A++ ++G E  GR LR+  AA
Sbjct: 72  SAMRNLNGREFSGRALRVDNAA 93



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           YD+ T + +G+ F      E A  A++  NG    GR +RV+
Sbjct: 49  YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90

---

>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 25/82 (30%), Positives = 46/82 (56%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D     V+ GN+ +    + LK  F     +V  R++++R+TG+ +G+GF  +   + A 
Sbjct: 12  DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

Query: 384 AALQAMDGVELDGRPLRLSLAA 449
           +A++ ++G E  GR LR+  AA
Sbjct: 72  SAMRNLNGREFSGRALRVDNAA 93



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           YD+ T + +G+ F      E A  A++  NG    GR +RV+
Sbjct: 49  YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90

---

>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 25/82 (30%), Positives = 46/82 (56%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D     V+ GN+ +    + LK  F     +V  R++++R+TG+ +G+GF  +   + A 
Sbjct: 12  DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

Query: 384 AALQAMDGVELDGRPLRLSLAA 449
           +A++ ++G E  GR LR+  AA
Sbjct: 72  SAMRNLNGREFSGRALRVDNAA 93



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           YD+ T + +G+ F      E A  A++  NG    GR +RV+
Sbjct: 49  YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90

---

>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 25/82 (30%), Positives = 46/82 (56%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D     V+ GN+ +    + LK  F     +V  R++++R+TG+ +G+GF  +   + A 
Sbjct: 12  DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

Query: 384 AALQAMDGVELDGRPLRLSLAA 449
           +A++ ++G E  GR LR+  AA
Sbjct: 72  SAMRNLNGREFSGRALRVDNAA 93



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           YD+ T + +G+ F      E A  A++  NG    GR +RV+
Sbjct: 49  YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90

---

>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 27/75 (36%), Positives = 41/75 (54%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y GNL + V    L   F     +   ++  +R+TGR RGFGFV      +  AA++A+
Sbjct: 3   IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62

Query: 402 DGVELDGRPLRLSLA 446
           DG E  GR L+++ A
Sbjct: 63  DGAEWMGRDLKVNKA 77



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T R RGF FV +    E   A++  +GA   GR ++VN
Sbjct: 35  DRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVN 75

---

>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)|
          Length = 142

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 25/63 (39%), Positives = 44/63 (69%)
 Frame = +3

Query: 258 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRL 437
           ++L +AF     ++ +++I +R+T RSRGFGFV+F T +   +A++ M+G ELDGR + +
Sbjct: 1   NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITV 60

Query: 438 SLA 446
           + A
Sbjct: 61  NEA 63



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 23/49 (46%), Positives = 29/49 (59%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 152
           D+ T RSRGF FVT +T E    A++  NG  L GR + VN  +  RGG
Sbjct: 21  DRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ-SRGG 68

---

>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 40/143 (27%), Positives = 63/143 (44%)
 Frame = +3

Query: 18  DRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXX 197
           D+ RGF FV  A  E A KAV   N     G+ + V   +     E              
Sbjct: 298 DKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEK 357

Query: 198 XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQD 377
                   ++  NL   V  + LK  F     +  A+++ + + G+S+GFGFV + T ++
Sbjct: 358 MNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEE 416

Query: 378 AXAALQAMDGVELDGRPLRLSLA 446
           A  A+  M+   L G+PL ++LA
Sbjct: 417 ANKAVTEMNQRMLAGKPLYVALA 439



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G L   V    L   F     +   RV  +  T RS G+ +V+FH ++D   AL  +
Sbjct: 82  LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141

Query: 402 DGVELDGRPLRL 437
           +   + GRP R+
Sbjct: 142 NYTLIKGRPCRI 153



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 33/141 (23%), Positives = 55/141 (39%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           ++G+ FV   + E A  A++  NG LL  + V V      R  +                
Sbjct: 207 AKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFT----- 261

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 VY  NL   +        F GQ G + +  + +    + RGFGFV++   + A 
Sbjct: 262 -----NVYIKNLDTEITEQEFSDLF-GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQ 315

Query: 384 AALQAMDGVELDGRPLRLSLA 446
            A+  ++  E  G+ L +  A
Sbjct: 316 KAVDELNDKEYKGKKLYVGRA 336

---

>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  T  S G+AFV   +  ++ +A+++ NG  +  + ++V++     GGE          
Sbjct: 161 DYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDT----- 213

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y  NL   +  D L T F     +V   ++ ++ TGR RG  FV ++
Sbjct: 214 -----------NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 262

Query: 366 TIQDAXAALQAMDGVELDG--RPLRLSLAAQN 455
             ++A  A+ A++ V  +G  +PL + LA ++
Sbjct: 263 KREEAQEAISALNNVIPEGGSQPLSVRLAQEH 294

---

>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  T  S G+AFV   +  ++ +A+++ NG  +  + ++V++     GGE          
Sbjct: 159 DYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDT----- 211

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y  NL   +  D L T F     +V   ++ ++ TGR RG  FV ++
Sbjct: 212 -----------NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 260

Query: 366 TIQDAXAALQAMDGVELDG--RPLRLSLAAQN 455
             ++A  A+ A++ V  +G  +PL + LA ++
Sbjct: 261 KREEAQEAISALNNVIPEGGSQPLSVRLAEEH 292

---

>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)|
          Length = 348

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  T  S G+AFV  A   ++ +A++  NG  +  + ++V++     GGE          
Sbjct: 144 DYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYAR--PGGESIKDT----- 196

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y  NL   +  D L T F     +V   ++ ++ TG+ RG  FV F+
Sbjct: 197 -----------NLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFN 245

Query: 366 TIQDAXAALQAMDGVELDG--RPLRLSLAAQN 455
             ++A  A+ A++ V  +G  +PL + LA ++
Sbjct: 246 KREEAQEAISALNNVIPEGASQPLTVRLAEEH 277

---

>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  T  S G+AFV  A+  +A  A++  NG  +  + ++V++     GGE          
Sbjct: 119 DYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYAR--PGGESIKDT----- 171

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y  NL   +  D L+  F     +V   ++ ++ TG+ RG  FV F+
Sbjct: 172 -----------NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFN 220

Query: 366 TIQDAXAALQAMDGVELDG--RPLRLSLAAQN 455
             ++A  A+ A++ V  +G  +PL + LA ++
Sbjct: 221 KREEAQEAISALNNVIPEGASQPLTVRLAEEH 252

---

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTM---ATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 176
           D  T RSRGF F++    ++ +E  K   + +G ++  +        +PR  +       
Sbjct: 193 DPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ------- 239

Query: 177 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 356
                     D T K++ G +G  VR    +  F     ++ A+++ ++DTG+SRGFGFV
Sbjct: 240 ----------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFV 289

Query: 357 SF 362
           ++
Sbjct: 290 TY 291



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH---TIQDAXAA 389
           K++ G L W    D L+  F     +   +++ +  TGRSRGFGF+SF    ++ +    
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219

Query: 390 LQAMDGVELD 419
              +DG  +D
Sbjct: 220 QHILDGKVID 229

---

>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD---TGR--SRGFGFVSFHTIQD 377
           T  V+  NL +     AL   F+  PG V A V  + D   +G+  S GFGFV F T + 
Sbjct: 616 TVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQ 675

Query: 378 AXAALQAMDGVELDGRPLRLSLA 446
           A  A+  +DG  LDG  L+L L+
Sbjct: 676 ANVAISTLDGHVLDGHKLQLKLS 698



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 38/144 (26%), Positives = 58/144 (40%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
            S GF FV   T E+A  A+   +G +L G  +++        G                 
Sbjct: 662  SMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSS---- 717

Query: 204  DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 K+   NL +      L   F     L   RV  + D   +RGF FV F+ +++A 
Sbjct: 718  -----KIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAE 771

Query: 384  AALQAMDGVELDGRPLRLSLAAQN 455
             A+  ++GV L GR L +  A Q+
Sbjct: 772  TAMSQLEGVHLLGRRLVMQYAEQD 795



 Score = 35.0 bits (79), Expect = 0.093
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
           T +++  N+ +    +  ++ F     L    +  +  TG+S+GF +V F   +DA  A 
Sbjct: 309 TGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAY 368

Query: 393 QAMDGVELDGRPLRL 437
           +++D     GR L +
Sbjct: 369 RSLDKQIFQGRLLHI 383



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 9   KITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           K    +RGFAFV     +EA  A+    G  L GR + + + E
Sbjct: 751 KFDQSARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAE 793

---

>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 34/139 (24%), Positives = 61/139 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DKIT +S G+ FV     ++A KA+   NG  L  +T++V++   P              
Sbjct: 73  DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA------ 125

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y   L   +    L+  F     ++ +R++ ++ TG SRG GF+ F 
Sbjct: 126 -----------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174

Query: 366 TIQDAXAALQAMDGVELDG 422
              +A  A++ ++G +  G
Sbjct: 175 KRIEAEEAIKGLNGQKPSG 193



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           T++ +GF FVTM   +EAA A+   NG  LG R ++V+F
Sbjct: 327 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 365



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 18/81 (22%), Positives = 42/81 (51%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           DD    +    L   +  +  ++ F     +   +++ ++ TG+S G+GFV++   +DA 
Sbjct: 35  DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94

Query: 384 AALQAMDGVELDGRPLRLSLA 446
            A+  ++G+ L  + +++S A
Sbjct: 95  KAINTLNGLRLQTKTIKVSYA 115



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +3

Query: 306 RVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLS 440
           +VI + +T + +GFGFV+     +A  A+ +++G  L  R L++S
Sbjct: 320 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 364

---

>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 34/139 (24%), Positives = 61/139 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DKIT +S G+ FV     ++A KA+   NG  L  +T++V++   P              
Sbjct: 85  DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA------ 137

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y   L   +    L+  F     ++ +R++ ++ TG SRG GF+ F 
Sbjct: 138 -----------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 186

Query: 366 TIQDAXAALQAMDGVELDG 422
              +A  A++ ++G +  G
Sbjct: 187 KRIEAEEAIKGLNGQKPSG 205



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           T++ +GF FVTM   +EAA A+   NG  LG R ++V+F
Sbjct: 339 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 377



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 18/81 (22%), Positives = 42/81 (51%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           DD    +    L   +  +  ++ F     +   +++ ++ TG+S G+GFV++   +DA 
Sbjct: 47  DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106

Query: 384 AALQAMDGVELDGRPLRLSLA 446
            A+  ++G+ L  + +++S A
Sbjct: 107 KAINTLNGLRLQTKTIKVSYA 127



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +3

Query: 306 RVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLS 440
           +VI + +T + +GFGFV+     +A  A+ +++G  L  R L++S
Sbjct: 332 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 376

---

>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D++T   +GF FV     E+A  A+++ N   L G+ ++VN                   
Sbjct: 47  DRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVN----------------KAS 90

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGA-RVIFERDTGRSRGFGFVSF 362
                 D G   ++ GNL   V    L   F     ++   +++ + D+G S+GF F++F
Sbjct: 91  AHEKNMDVGA-NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLA 446
            + + +  AL+AM+G  L  R + +S A
Sbjct: 150 ASFEASDTALEAMNGQFLCNRAITVSYA 177



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 21/76 (27%), Positives = 39/76 (51%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G L   V    L         +V   +  +R T   +GFGFV F   +DA  A++ +
Sbjct: 15  IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74

Query: 402 DGVELDGRPLRLSLAA 449
           + ++L G+P++++ A+
Sbjct: 75  NMIKLYGKPIKVNKAS 90

---

>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 34/139 (24%), Positives = 61/139 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DKIT +S G+ FV     ++A KA+   NG  L  +T++V++   P              
Sbjct: 80  DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA------ 132

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y   L   +    L+  F     ++ +R++ ++ TG SRG GF+ F 
Sbjct: 133 -----------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181

Query: 366 TIQDAXAALQAMDGVELDG 422
              +A  A++ ++G +  G
Sbjct: 182 KRIEAEEAIKGLNGQKPSG 200



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           T++ +GF FVTM   +EAA A+   NG  LG R ++V+F
Sbjct: 334 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 372



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 18/81 (22%), Positives = 42/81 (51%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           DD    +    L   +  +  ++ F     +   +++ ++ TG+S G+GFV++   +DA 
Sbjct: 42  DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101

Query: 384 AALQAMDGVELDGRPLRLSLA 446
            A+  ++G+ L  + +++S A
Sbjct: 102 KAINTLNGLRLQTKTIKVSYA 122



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +3

Query: 306 RVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLS 440
           +VI + +T + +GFGFV+     +A  A+ +++G  L  R L++S
Sbjct: 327 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 371

---

>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 34/139 (24%), Positives = 61/139 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DKIT +S G+ FV     ++A KA+   NG  L  +T++V++   P              
Sbjct: 73  DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA------ 125

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y   L   +    L+  F     ++ +R++ ++ TG SRG GF+ F 
Sbjct: 126 -----------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174

Query: 366 TIQDAXAALQAMDGVELDG 422
              +A  A++ ++G +  G
Sbjct: 175 KRIEAEEAIKGLNGQKPPG 193



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           T++ +GF FVTM   +EAA A+   NG  LG R ++V+F
Sbjct: 314 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 352



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 19/81 (23%), Positives = 43/81 (53%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           +D    +    L   +  + LK+ F     +   +++ ++ TG+S G+GFV++   +DA 
Sbjct: 35  EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94

Query: 384 AALQAMDGVELDGRPLRLSLA 446
            A+  ++G+ L  + +++S A
Sbjct: 95  KAINTLNGLRLQTKTIKVSYA 115



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +3

Query: 294 LVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLS 440
           +   +VI + +T + +GFGFV+     +A  A+ +++G  L  R L++S
Sbjct: 303 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 351

---

>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 34/139 (24%), Positives = 61/139 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DKIT +S G+ FV     ++A KA+   NG  L  +T++V++   P              
Sbjct: 73  DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA------ 125

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y   L   +    L+  F     ++ +R++ ++ TG SRG GF+ F 
Sbjct: 126 -----------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174

Query: 366 TIQDAXAALQAMDGVELDG 422
              +A  A++ ++G +  G
Sbjct: 175 KRIEAEEAIKGLNGQKPPG 193



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           T++ +GF FVTM   +EAA A+   NG  LG R ++V+F
Sbjct: 313 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 17/63 (26%), Positives = 38/63 (60%)
 Frame = +3

Query: 258 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRL 437
           + LK+ F     +   +++ ++ TG+S G+GFV++   +DA  A+  ++G+ L  + +++
Sbjct: 53  EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112

Query: 438 SLA 446
           S A
Sbjct: 113 SYA 115



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +3

Query: 294 LVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLS 440
           +   +VI + +T + +GFGFV+     +A  A+ +++G  L  R L++S
Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350

---

>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 34/139 (24%), Positives = 61/139 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DKIT +S G+ FV     ++A KA+   NG  L  +T++V++   P              
Sbjct: 73  DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA------ 125

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y   L   +    L+  F     ++ +R++ ++ TG SRG GF+ F 
Sbjct: 126 -----------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174

Query: 366 TIQDAXAALQAMDGVELDG 422
              +A  A++ ++G +  G
Sbjct: 175 KRIEAEEAIKGLNGQKPPG 193



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           T++ +GF FVTM   +EAA A+   NG  LG R ++V+F
Sbjct: 313 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 19/81 (23%), Positives = 43/81 (53%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           +D    +    L   +  + LK+ F     +   +++ ++ TG+S G+GFV++   +DA 
Sbjct: 35  EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94

Query: 384 AALQAMDGVELDGRPLRLSLA 446
            A+  ++G+ L  + +++S A
Sbjct: 95  KAINTLNGLRLQTKTIKVSYA 115



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +3

Query: 294 LVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLS 440
           +   +VI + +T + +GFGFV+     +A  A+ +++G  L  R L++S
Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350

---

>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 34/139 (24%), Positives = 61/139 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DKIT +S G+ FV     ++A KA+   NG  L  +T++V++   P              
Sbjct: 73  DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA------ 125

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y   L   +    L+  F     ++ +R++ ++ TG SRG GF+ F 
Sbjct: 126 -----------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174

Query: 366 TIQDAXAALQAMDGVELDG 422
              +A  A++ ++G +  G
Sbjct: 175 KRIEAEEAIKGLNGQKPPG 193



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           T++ +GF FVTM   +EAA A+   NG  LG R ++V+F
Sbjct: 313 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 19/81 (23%), Positives = 43/81 (53%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           +D    +    L   +  + LK+ F     +   +++ ++ TG+S G+GFV++   +DA 
Sbjct: 35  EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94

Query: 384 AALQAMDGVELDGRPLRLSLA 446
            A+  ++G+ L  + +++S A
Sbjct: 95  KAINTLNGLRLQTKTIKVSYA 115



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +3

Query: 294 LVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLS 440
           +   +VI + +T + +GFGFV+     +A  A+ +++G  L  R L++S
Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350

---

>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 36/141 (25%), Positives = 60/141 (42%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV   T E A KAV   +G  + G+ + V   +                     
Sbjct: 237 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL   +  + LK  F     +  A+V+ E   G+ +GFG V F + ++A
Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             A+  M+G  +  +PL ++L
Sbjct: 355 TKAVDEMNGRVVGSKPLHVTL 375



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 194
           S+G+A+V   +   A +A+   NG  L  R V   R  FPE  R  E             
Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193

Query: 195 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 371
              D  T+  V+  N+G  +  + LK  F         +VI +  +G+S+GFGFV + T 
Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249

Query: 372 QDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
           + A  A+  + G  +DG+ L +  A + ++
Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G+L   V  D L   F     L   R+  +  T    G+G+V+F    DA  AL  M
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query: 402 DGVELDGRPLRL 437
           +   ++G+P RL
Sbjct: 80  NFDLINGKPFRL 91



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 30/140 (21%), Positives = 56/140 (40%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D +T    G+ +V      +A  A+   N  L+ G+  R+ + +                
Sbjct: 52  DPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD-------------- 97

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+ + D G S+G+ +V F 
Sbjct: 98  --DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFD 153

Query: 366 TIQDAXAALQAMDGVELDGR 425
           ++  A  A+  M+GV L+ R
Sbjct: 154 SLAAANRAIWHMNGVRLNNR 173



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           + +GF  V  ++ EEA KAV   NG ++G + + V   +  R
Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQARR 380

---

>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 36/141 (25%), Positives = 60/141 (42%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV   T E A KAV   +G  + G+ + V   +                     
Sbjct: 237 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL   +  + LK  F     +  A+V+ E   G+ +GFG V F + ++A
Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             A+  M+G  +  +PL ++L
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTL 375



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 194
           S+G+A+V   +   A +A+   NG  L  R V   R  FPE  R  E             
Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193

Query: 195 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 371
              D  T+  V+  N+G  +  + LK  F         +VI +  +G+S+GFGFV + T 
Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249

Query: 372 QDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
           + A  A+  + G  +DG+ L +  A + ++
Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G+L   V  D L   F     L   R+  +  T    G+G+V+F    DA  AL  M
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query: 402 DGVELDGRPLRL 437
           +   ++G+P RL
Sbjct: 80  NFDLINGKPFRL 91



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 30/140 (21%), Positives = 56/140 (40%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D +T    G+ +V      +A  A+   N  L+ G+  R+ + +                
Sbjct: 52  DPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD-------------- 97

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+ + D G S+G+ +V F 
Sbjct: 98  --DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFD 153

Query: 366 TIQDAXAALQAMDGVELDGR 425
           ++  A  A+  M+GV L+ R
Sbjct: 154 SLAAANRAIWHMNGVRLNNR 173



 Score = 32.0 bits (71), Expect = 0.79
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           + +GF  V  ++ EEA KAV   NG ++G + + V   +  R
Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380

---

>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 36/141 (25%), Positives = 60/141 (42%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV   T E A KAV   +G  + G+ + V   +                     
Sbjct: 237 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL   +  + LK  F     +  A+V+ E   G+ +GFG V F + ++A
Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             A+  M+G  +  +PL ++L
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTL 375



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 194
           S+G+A+V   +   A +A+   NG  L  R V   R  FPE  R  E             
Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193

Query: 195 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 371
              D  T+  V+  N+G  +  + LK  F         +VI +  +G+S+GFGFV + T 
Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249

Query: 372 QDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
           + A  A+  + G  +DG+ L +  A + ++
Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G+L   V  D L   F     L   R+  +  T    G+G+V+F    DA  AL  M
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query: 402 DGVELDGRPLRL 437
           +   ++G+P RL
Sbjct: 80  NFDLINGKPFRL 91



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 30/140 (21%), Positives = 56/140 (40%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D +T    G+ +V      +A  A+   N  L+ G+  R+ + +                
Sbjct: 52  DPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD-------------- 97

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+ + D G S+G+ +V F 
Sbjct: 98  --DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFD 153

Query: 366 TIQDAXAALQAMDGVELDGR 425
           ++  A  A+  M+GV L+ R
Sbjct: 154 SLAAANRAIWHMNGVRLNNR 173



 Score = 32.0 bits (71), Expect = 0.79
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           + +GF  V  ++ EEA KAV   NG ++G + + V   +  R
Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380

---

>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 36/141 (25%), Positives = 60/141 (42%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV   T E A KAV   +G  + G+ + V   +                     
Sbjct: 237 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL   +  + LK  F     +  A+V+ E   G+ +GFG V F + ++A
Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             A+  M+G  +  +PL ++L
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTL 375



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 194
           S+G+A+V   +   A +A+   NG  L  R V   R  FPE  R  E             
Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193

Query: 195 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 371
              D  T+  V+  N+G  +  + LK  F         +VI +  +G+S+GFGFV + T 
Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249

Query: 372 QDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
           + A  A+  + G  +DG+ L +  A + ++
Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G+L   V  D L   F     L   R+  +  T    G+G+V+F    DA  AL  M
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query: 402 DGVELDGRPLRL 437
           +   ++G+P RL
Sbjct: 80  NFDLINGKPFRL 91



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 30/140 (21%), Positives = 56/140 (40%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D +T    G+ +V      +A  A+   N  L+ G+  R+ + +                
Sbjct: 52  DPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD-------------- 97

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+ + D G S+G+ +V F 
Sbjct: 98  --DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFD 153

Query: 366 TIQDAXAALQAMDGVELDGR 425
           ++  A  A+  M+GV L+ R
Sbjct: 154 SLAAANRAIWHMNGVRLNNR 173



 Score = 32.0 bits (71), Expect = 0.79
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           + +GF  V  ++ EEA KAV   NG ++G + + V   +  R
Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380

---

>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 36/141 (25%), Positives = 60/141 (42%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV   T E A KAV   +G  + G+ + V   +                     
Sbjct: 237 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL   +  + LK  F     +  A+V+ E   G+ +GFG V F + ++A
Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             A+  M+G  +  +PL ++L
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTL 375



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 194
           S+G+A+V   +   A +A+   NG  L  R V   R  FPE  R  E             
Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193

Query: 195 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 371
              D  T+  V+  N+G  +  + LK  F         +VI +  +G+S+GFGFV + T 
Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249

Query: 372 QDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
           + A  A+  + G  +DG+ L +  A + ++
Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G+L   V  D L   F     L   R+  +  T    G+G+V+F    DA  AL  M
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query: 402 DGVELDGRPLRL 437
           +   ++G+P RL
Sbjct: 80  NFDLINGKPFRL 91



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 30/140 (21%), Positives = 56/140 (40%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D +T    G+ +V      +A  A+   N  L+ G+  R+ + +                
Sbjct: 52  DPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD-------------- 97

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+ + D G S+G+ +V F 
Sbjct: 98  --DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFD 153

Query: 366 TIQDAXAALQAMDGVELDGR 425
           ++  A  A+  M+GV L+ R
Sbjct: 154 SLAAANRAIWHMNGVRLNNR 173



 Score = 32.0 bits (71), Expect = 0.79
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           + +GF  V  ++ EEA KAV   NG ++G + + V   +  R
Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380

---

>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 36/141 (25%), Positives = 60/141 (42%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV   T E A KAV   +G  + G+ + V   +                     
Sbjct: 237 KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEK 296

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  NL   +  + LK  F     +  A+V+ E   G+ +GFG V F + ++A
Sbjct: 297 SRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEA 354

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             A+  M+G  +  +PL ++L
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTL 375



 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 4/150 (2%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 194
           S+G+A+V   +   A +A+   NG  L  R V   R  FPE  R  E             
Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193

Query: 195 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 371
              D  T+  V+  N+G  +  + LK  F         +VI +  +G+S+GFGFV + T 
Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249

Query: 372 QDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
           + A  A+  + G  +DG+ L +  A + ++
Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G+L   V  D L   F     L   R+  +  T    G+G+V+F    DA  AL  M
Sbjct: 20  LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query: 402 DGVELDGRPLRL 437
           +   ++G+P RL
Sbjct: 80  NFDLINGKPFRL 91



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 30/140 (21%), Positives = 56/140 (40%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D +T    G+ +V      +A  A+   N  L+ G+  R+ + +                
Sbjct: 52  DPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD-------------- 97

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G   ++  NL   +   AL   F     ++  +V+ + D G S+G+ +V F 
Sbjct: 98  --DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFD 153

Query: 366 TIQDAXAALQAMDGVELDGR 425
           ++  A  A+  M+GV L+ R
Sbjct: 154 SLAAANRAIWHMNGVRLNNR 173



 Score = 32.0 bits (71), Expect = 0.79
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           + +GF  V  ++ EEA KAV   NG ++G + + V   +  R
Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380

---

>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)|
          Length = 367

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 32/134 (23%), Positives = 59/134 (44%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DKIT +S G+ FV  +   +A KA+   NG  L  +T++V++   P              
Sbjct: 73  DKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR-PSSASIRDA------ 125

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y   L   +    ++  F     ++ +R++ ++ TG SRG GF+ F 
Sbjct: 126 -----------NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFD 174

Query: 366 TIQDAXAALQAMDG 407
              +A  A++ ++G
Sbjct: 175 KRIEAEEAIKGLNG 188



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 20/81 (24%), Positives = 42/81 (51%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           DD    +    L   +  D  K+ F     +   +++ ++ TG+S G+GFV++    DA 
Sbjct: 35  DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94

Query: 384 AALQAMDGVELDGRPLRLSLA 446
            A+  ++G++L  + +++S A
Sbjct: 95  KAINTLNGLKLQTKTIKVSYA 115



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           D  T++ +GF FVTM   +EAA A+   NG  LG R ++V+F
Sbjct: 318 DFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF 359



 Score = 32.7 bits (73), Expect = 0.46
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 294 LVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLS 440
           +   +VI +  T + +GFGFV+     +A  A+ +++G  L  R L++S
Sbjct: 310 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358

---

>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 2/150 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DK+   S G+ FV   TA++A +A+   NG  L  +T++V++                  
Sbjct: 54  DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY----------------AR 97

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                  D    +Y   L   +    ++  F     ++ +RV+ ++ TG SRG  F+ F 
Sbjct: 98  PSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155

Query: 366 TIQDAXAALQAMDGVELDG--RPLRLSLAA 449
              +A  A+ + +G +  G   P+ +  AA
Sbjct: 156 KRSEAEEAITSFNGHKPPGSSEPITVKFAA 185



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           T++ +GF FVTM   EEAA A+   NG  LG + ++V+F
Sbjct: 281 TNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319



 Score = 35.4 bits (80), Expect = 0.072
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++  NLG       L   F     +   +VI + +T + +GFGFV+    ++A  A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query: 402 DGVELDGRPLRLS 440
           +G  L  + L++S
Sbjct: 306 NGYRLGDKILQVS 318

---

>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic|
           cerebellar degeneration-associated antigen)
           (Paraneoplastic limbic encephalitis antigen 21)
          Length = 367

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 32/134 (23%), Positives = 59/134 (44%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DKIT +S G+ FV  +   +A KA+   NG  L  +T++V++   P              
Sbjct: 73  DKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR-PSSASIRDA------ 125

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                       +Y   L   +    ++  F     ++ +R++ ++ TG SRG GF+ F 
Sbjct: 126 -----------NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174

Query: 366 TIQDAXAALQAMDG 407
              +A  A++ ++G
Sbjct: 175 KRIEAEEAIKGLNG 188



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 20/81 (24%), Positives = 42/81 (51%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           DD    +    L   +  D  K+ F     +   +++ ++ TG+S G+GFV++    DA 
Sbjct: 35  DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94

Query: 384 AALQAMDGVELDGRPLRLSLA 446
            A+  ++G++L  + +++S A
Sbjct: 95  KAINTLNGLKLQTKTIKVSYA 115



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           D  T++ +GF FVTM   +EAA A+   NG  LG R ++V+F
Sbjct: 318 DFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF 359



 Score = 32.7 bits (73), Expect = 0.46
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 294 LVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLS 440
           +   +VI +  T + +GFGFV+     +A  A+ +++G  L  R L++S
Sbjct: 310 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358

---

>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 25/78 (32%), Positives = 43/78 (55%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L       AL+  F     +V   ++ +R+T +SRGF FV+F +  DA  A + 
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query: 399 MDGVELDGRPLRLSLAAQ 452
           M+G  LDG+ +++  A +
Sbjct: 69  MNGKSLDGKAIKVEQATK 86



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 125
           D+ T++SRGFAFVT  +  +A  A +  NG  L G+ ++V
Sbjct: 42  DRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKV 81

---

>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3|
          Length = 388

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 28/77 (36%), Positives = 44/77 (57%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
           +  + GNL + +  + L   F    G+   R++ +  T RSRGFG+V F T     AAL 
Sbjct: 94  FTAHVGNLSFDLTENDLGDFFG--EGVTSIRLVIDPLTERSRGFGYVEFETADTLSAAL- 150

Query: 396 AMDGVELDGRPLRLSLA 446
           A+ G +L GRP+R+++A
Sbjct: 151 ALSGEDLMGRPVRITVA 167



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           D +T+RSRGF +V   TA+  + A+ + +G  L GR VR+   E  R
Sbjct: 126 DPLTERSRGFGYVEFETADTLSAALAL-SGEDLMGRPVRITVAEPRR 171

---

>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 1/140 (0%)
 Frame = +3

Query: 33  FAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG 212
           + FV  +++  A +A+  +N  ++ G            GG                  D 
Sbjct: 130 YCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGG---------IQHNNFVSRDP 180

Query: 213 TYKVYAGNLGWGVRADALKTAFEG-QPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAA 389
            + ++ G+L        L   F    P    A++I +  TG SR +GFV F + ++   A
Sbjct: 181 EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHA 240

Query: 390 LQAMDGVELDGRPLRLSLAA 449
           L  M G    GRPLR+S+A+
Sbjct: 241 LMHMQGYLCQGRPLRISVAS 260

---

>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 35/140 (25%), Positives = 60/140 (42%)
 Frame = +3

Query: 27  RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXD 206
           +GF FV     E+A KAV+  N + L G  + V   +                       
Sbjct: 258 KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAK 317

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
                ++  NL   V  + L+  F     +  A+V+   + G+S+GFGFV F T ++A  
Sbjct: 318 YQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATK 376

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A+   +   + G+PL +++A
Sbjct: 377 AITEKNQQIVAGKPLYVAIA 396



 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 34/142 (23%), Positives = 62/142 (43%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D IT  S G+A+V     E   KA++  N   + GR  R+ + +                
Sbjct: 71  DAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQ---------------- 114

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                   G+  ++  NL   +   AL   F     ++ +++  + + G+S+GFGFV F 
Sbjct: 115 RDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFE 173

Query: 366 TIQDAXAALQAMDGVELDGRPL 431
               A  A+ A++G+ L+G+ +
Sbjct: 174 EEGAAKEAIDALNGMLLNGQEI 195



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 36/142 (25%), Positives = 61/142 (42%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +S+GF FV       A +A+   NG LL G+ + V  P + R                  
Sbjct: 163 KSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-PHLSRKERDSQLEETKAHYT--- 218

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  +Y  N+      +  +  F     +V A +  + D G+ +GFGFV++   +DA
Sbjct: 219 ------NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDA 271

Query: 381 XAALQAMDGVELDGRPLRLSLA 446
             A++A++  EL+G  L +  A
Sbjct: 272 VKAVEALNDSELNGEKLYVGRA 293



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 125
           +S+GF FV  +T EEA KA+   N  ++ G+ + V
Sbjct: 359 KSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 393

---

>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHT 368
           D  T  ++  NL +   +  L   F+   G V A+V  + D  +     S GFGFV F T
Sbjct: 636 DGPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRT 695

Query: 369 IQDAXAALQAMDGVELDGRPLRLSLA 446
            + A A + AMDG  +DG  ++L L+
Sbjct: 696 KEQATAVISAMDGTVIDGHKIQLKLS 721



 Score = 38.1 bits (87), Expect = 0.011
 Identities = 36/143 (25%), Positives = 54/143 (37%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
            S GF FV   T E+A   +   +G ++ G  +++      R G                 
Sbjct: 685  SMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSH--RQGNAGSQEKKKAKNG---- 738

Query: 204  DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 K+   NL +      +   F     L   RV  + D   +RGF FV F   ++A 
Sbjct: 739  -----KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAE 792

Query: 384  AALQAMDGVELDGRPLRLSLAAQ 452
             A+  + GV L GR L +  A Q
Sbjct: 793  NAMDQLQGVHLLGRRLVMQPAEQ 815



 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAV-----QMFNGALL 104
           D  T  S+GFA+V  A  EEA +A      Q+F G LL
Sbjct: 359 DTRTGNSKGFAYVLFAKPEEAVQAYIELDKQIFQGRLL 396



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 291 GLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDG 407
           GL+    I +   G+SR F F+ +   QDA  A+   DG
Sbjct: 37  GLITDLRILKNREGKSRRFAFIGYKNEQDALDAVNYFDG 75

---

>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 2/150 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DK+   S G+ FV   TA++A +A+   NG  L  +T++V++                  
Sbjct: 54  DKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSY----------------AR 97

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                  D    +Y   L   +    ++  F     ++ +RV+ ++ TG SRG  F+ F 
Sbjct: 98  PSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155

Query: 366 TIQDAXAALQAMDGVELDG--RPLRLSLAA 449
              +A  A+ +  G +  G   P+ +  AA
Sbjct: 156 KRSEAEEAITSFIGHKPPGSSEPITVKFAA 185



 Score = 38.9 bits (89), Expect = 0.006
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           T++ +GF FVTM   EE+A A+   NG  LG + ++V+F
Sbjct: 281 TNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVSF 319



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 18/73 (24%), Positives = 37/73 (50%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++  NLG       L   F     +   +VI + +T + +GFGFV+    +++  A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305

Query: 402 DGVELDGRPLRLS 440
           +G  L  + L++S
Sbjct: 306 NGYRLGDKILQVS 318

---

>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = +3

Query: 264 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSL 443
           L+  F     +    +++++ + RSRGF FV F  + DA  A +  +G+ELDGR +R+  
Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193

Query: 444 A 446
           +
Sbjct: 194 S 194



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF-----PEVPRGG 152
           YD+ + RSRGFAFV     ++A +A +  NG  L GR +RV+F     P  P  G
Sbjct: 151 YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPG 205

---

>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = +3

Query: 264 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSL 443
           L+  F     +    +++++ + RSRGF FV F  + DA  A +  +G+ELDGR +R+  
Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193

Query: 444 A 446
           +
Sbjct: 194 S 194



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF-----PEVPRGG 152
           YD+ + RSRGFAFV     ++A +A +  NG  L GR +RV+F     P  P  G
Sbjct: 151 YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPG 205

---

>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = +3

Query: 264 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSL 443
           L+  F     +    +++++ + RSRGF FV F  + DA  A +  +G+ELDGR +R+  
Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193

Query: 444 A 446
           +
Sbjct: 194 S 194



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF-----PEVPRGG 152
           YD+ + RSRGFAFV     ++A +A +  NG  L GR +RV+F     P  P  G
Sbjct: 151 YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPG 205

---

>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
 Frame = +3

Query: 99  LLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG-TYKVYAGNLGWGVRADALKTA 275
           LL G     +  E+ +  E                 DG T  ++  NL +   +  L   
Sbjct: 572 LLEGDAAPEDVKEIKKSVEDVMDADSKTPSSEATAIDGPTVSIFVKNLNFSTTSAQLAEK 631

Query: 276 FEGQPGLVGARVIFERDTGRS-----RGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLS 440
           F+   G V A+V  + D   S      GFGF+ F T + A A + AMDG  +DG  ++L 
Sbjct: 632 FKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLK 691

Query: 441 LA 446
           ++
Sbjct: 692 IS 693



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 7/150 (4%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV-------NFPEVPRGGEXXXXXXXXX 182
            S GF F+   T E+A   +   +GA++ G  +++       + P+  +G +         
Sbjct: 657  SMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSKGSKKKISG---- 712

Query: 183  XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                        K+   NL +      +   F     L   RV  + D   +RGF FV F
Sbjct: 713  ------------KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEF 759

Query: 363  HTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
                +A  A+  + GV L GR L +  A Q
Sbjct: 760  LLPSEAENAMDQLQGVHLLGRRLVMQYAEQ 789



 Score = 29.3 bits (64), Expect = 5.1
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
           T +++  N+ +    +  K  F     L    V  +  TG+S+GF +V F   + A  A 
Sbjct: 300 TGRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAY 359

Query: 393 QAMDGVELDGRPLRL 437
             +D     GR L +
Sbjct: 360 IELDKQIFQGRLLHI 374



 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 312 IFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLA 446
           I +  +G SR F F+ + + QDA  A++  +G  +D   + +++A
Sbjct: 42  IVKDKSGNSRRFAFIGYRSEQDAFDAIEYFNGSFIDTARIEVAMA 86



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 9   KITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           K    +RGFAFV      EA  A+    G  L GR + + + E
Sbjct: 746 KFDKSARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAE 788

---

>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 377
           T  ++  NL +   +  L  AF+   G V A+V  + D  +     S GFGFV+F T   
Sbjct: 598 TSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQ 657

Query: 378 AXAALQAMDGVELDGRPLRLSLAAQNL 458
           A AAL+ MDG  LD   + +  + + L
Sbjct: 658 AQAALKVMDGQVLDAHKISVKASHRGL 684



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 36/141 (25%), Positives = 59/141 (41%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
            S GF FV   T ++A  A+++ +G +L    + V   +    G                 
Sbjct: 644  SMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISV---KASHRGLDAAEERRREDMAKKAA 700

Query: 204  DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
            + GT K+   NL + V    ++T F     LV  R+  ++    SRGF F  F T ++A 
Sbjct: 701  NQGT-KLVVKNLPFEVTKKEVRTLFSAYGKLVALRIP-KKFNQSSRGFAFAEFSTAKEAL 758

Query: 384  AALQAMDGVELDGRPLRLSLA 446
             A  ++    + GR L +  A
Sbjct: 759  NAFNSLKDTHILGRRLVIDFA 779



 Score = 30.8 bits (68), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 9   KITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           K    SRGFAF   +TA+EA  A        + GR + ++F +
Sbjct: 738 KFNQSSRGFAFAEFSTAKEALNAFNSLKDTHILGRRLVIDFAQ 780

---

>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 37/146 (25%), Positives = 66/146 (45%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DKI+ RS+G A+V     E++ +A    +G  L G  V V   E  +  +          
Sbjct: 274 DKISGRSKGVAYVEFCH-EDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARA 332

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                 +   +++   N+ + +  + +K  FE   G +    +   D  RS+GFG++ + 
Sbjct: 333 ASA---EIPFHRLCVSNIHFNLTDEDVKAIFEPF-GDIEFVHLQRDDQNRSKGFGYIQYR 388

Query: 366 TIQDAXAALQAMDGVELDGRPLRLSL 443
               A  AL+ M+G +L GR +R+ L
Sbjct: 389 NPISARNALEKMNGFDLAGRNMRVCL 414



 Score = 28.9 bits (63), Expect = 6.7
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           V+   L   + +  L   FE    +  A+++ ++ +GRS+G  +V F   +D+  A  A+
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDSVQAAIAL 300

Query: 402 DGVELDGRPLRLSL 443
            G  L G P+ + L
Sbjct: 301 SGKRLLGLPVIVQL 314

---

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 24/78 (30%), Positives = 42/78 (53%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L       AL+  F     +V   ++ +R+T +SRGF FV+F +  DA    + 
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68

Query: 399 MDGVELDGRPLRLSLAAQ 452
           M+G  LDG+ +++  A +
Sbjct: 69  MNGKSLDGKAIKVEQATK 86



 Score = 36.2 bits (82), Expect = 0.042
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 125
           D+ T++SRGFAFVT  +  +A    +  NG  L G+ ++V
Sbjct: 42  DRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKV 81

---

>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1|
          Length = 858

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 37/138 (26%), Positives = 60/138 (43%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
            S G+ FV   + + A  A +  +G +L   T+ V F    R  E                
Sbjct: 666  SMGYGFVGFKSIDAARTAQKAMDGKVLDAHTLVVTFAR--RNAEASTTSISSG------- 716

Query: 204  DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
              G+ K+   NL +      ++  F  Q  L   R+  + D   +RGFGFV + T+++A 
Sbjct: 717  --GSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDN-TTRGFGFVEYSTVREAQ 773

Query: 384  AALQAMDGVELDGRPLRL 437
            +A++A+    L GR L L
Sbjct: 774  SAMEALKHTHLLGRHLVL 791



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAXA 386
           +Y  NL +    + L   F G      AR+  + D  R     S G+GFV F +I  A  
Sbjct: 623 LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAART 682

Query: 387 ALQAMDGVELDGRPLRLSLAAQNLQ 461
           A +AMDG  LD   L ++ A +N +
Sbjct: 683 AQKAMDGKVLDAHTLVVTFARRNAE 707



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +++  NL +    D +   FE    +    +  ++ T  S+G  FVSF     A AA +A
Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374

Query: 399 MDGVELDGRPLRL 437
            DG    GR L L
Sbjct: 375 KDGSTFQGRLLHL 387

---

>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1|
          Length = 833

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 377
           T  +Y  NL +  + +  +  F+   G + A +  + D  R     S GFGFV F     
Sbjct: 618 TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKAS 677

Query: 378 AXAALQAMDGVELDGRPLRLSLAAQNL 458
           A AA+ AM+G  LDG  L + L+ Q +
Sbjct: 678 AVAAMHAMNGFVLDGHKLEIKLSHQGV 704



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
           T +++  NL +    D LK+ F     L    +  ++ T   +GF ++ FH   DA  A 
Sbjct: 322 TKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAY 381

Query: 393 QAMDGVELDGRPLRL 437
             +D     GR L +
Sbjct: 382 LELDAKPFQGRLLHV 396



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 35/142 (24%), Positives = 52/142 (36%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
            S GF FV       A  A+   NG +L G  + +                          
Sbjct: 664  SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKL------SHQGVDAAAEVRKQDSSK 717

Query: 204  DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
              GT K+   NL +      +++       L   RV  + D   +RGF F  F T ++A 
Sbjct: 718  PKGT-KILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRS-ARGFAFAEFVTAREAA 775

Query: 384  AALQAMDGVELDGRPLRLSLAA 449
             A++A+    L GR L L  A+
Sbjct: 776  NAMRALKNTHLLGRHLVLQYAS 797



 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 18  DRS-RGFAFVTMATAEEAAKAVQMFNGALLGGR 113
           DRS RGFAF    TA EAA A++      L GR
Sbjct: 757 DRSARGFAFAEFVTAREAANAMRALKNTHLLGR 789

---

>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 26/80 (32%), Positives = 43/80 (53%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           +G   +   NL +    + L+  FE    +    +  ++ + +S+GFGFV F+  +DA  
Sbjct: 16  NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           AL   DG  +DGR LR++LA
Sbjct: 76  ALDRTDGKLVDGRELRVTLA 95



 Score = 32.7 bits (73), Expect = 0.46
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF-----PEVPRGG 152
           DK + +S+GF FV      +A  A+   +G L+ GR +RV       P   RGG
Sbjct: 53  DKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGG 106

---

>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 26/75 (34%), Positives = 39/75 (52%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G L   V    L  AF     +   ++  + +T + RGF FV F   +DA AA+  M
Sbjct: 8   LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67

Query: 402 DGVELDGRPLRLSLA 446
           +  EL GR +R++LA
Sbjct: 68  NESELFGRTIRVNLA 82



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           D  T++ RGFAFV    AE+AA A+   N + L GRT+RVN  +  R
Sbjct: 40  DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 86

---

>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 26/75 (34%), Positives = 39/75 (52%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G L   V    L  AF     +   ++  + +T + RGF FV F   +DA AA+  M
Sbjct: 8   LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67

Query: 402 DGVELDGRPLRLSLA 446
           +  EL GR +R++LA
Sbjct: 68  NESELFGRTIRVNLA 82



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           D  T++ RGFAFV    AE+AA A+   N + L GRT+RVN  +  R
Sbjct: 40  DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 86

---

>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHT 368
           D  T  ++  NL +      L   F+   G V A+V  + D        S GFGFV F T
Sbjct: 659 DGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRT 718

Query: 369 IQDAXAALQAMDGVELDGRPLRLSLA 446
            + A A + AMDG  +DG  ++L L+
Sbjct: 719 KEQANAVIAAMDGTVIDGHKIQLKLS 744



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 33/144 (22%), Positives = 55/144 (38%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
            S GF FV   T E+A   +   +G ++ G  +++                          
Sbjct: 708  SMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSH---------RQASQSGNTKTKS 758

Query: 204  DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
            +  + K+   NL +      +   F     L   RV  + D   +RGF FV F   ++A 
Sbjct: 759  NKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAE 817

Query: 384  AALQAMDGVELDGRPLRLSLAAQN 455
             A+  + GV L GR L +  A ++
Sbjct: 818  NAMDQLHGVHLLGRRLVMQYAEED 841



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 288 PGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLA 446
           P L+    I     G SR FGF+ +   +DA  A++  +G  ++   + +S+A
Sbjct: 40  PDLITDVKILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMA 92



 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 9   KITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           K    +RGFAFV     +EA  A+   +G  L GR + + + E
Sbjct: 797 KFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYAE 839



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
           T +++  N+ +  + +  +  F     L    V  +  TG+S+GF +V F   ++A  A 
Sbjct: 344 TGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAY 403

Query: 393 QAMDGVELDGRPLRL 437
             +D     GR L +
Sbjct: 404 VELDKQIFQGRLLHI 418

---

>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 2/149 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLG-GRTVRVNFPEVPRGGEXXXXXXXXX 182
           ++ T  + G+ FV  A+  EA+ A+ M N  + G     ++N+     GG          
Sbjct: 127 NRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWAS---GGGLREKSISKA 183

Query: 183 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQ-PGLVGARVIFERDTGRSRGFGFVS 359
                      Y ++ G+L   V    + + F  +      A+++ +  T  SRG+GFV 
Sbjct: 184 SE---------YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVR 234

Query: 360 FHTIQDAXAALQAMDGVELDGRPLRLSLA 446
           F    D  +AL  M G     RP+R+ LA
Sbjct: 235 FTDENDQKSALAEMQGQICGDRPIRVGLA 263



 Score = 35.4 bits (80), Expect = 0.072
 Identities = 35/157 (22%), Positives = 51/157 (32%), Gaps = 12/157 (7%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXX------- 164
           D  T+ SRG+ FV      +   A+    G + G R +RV                    
Sbjct: 221 DPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPV 280

Query: 165 -----XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDT 329
                             D     V+ G L   V  + LK  F+    +V  ++      
Sbjct: 281 SMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI------ 334

Query: 330 GRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLS 440
              +G GFV F   Q A  A+  + G  L    +RLS
Sbjct: 335 PPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLS 371

---

>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1|
          Length = 769

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHT 368
           D+    ++   L +      L+T     PG   ARV  + D  R     S G+GFV F T
Sbjct: 531 DEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKT 590

Query: 369 IQDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
            + A  AL+A++G E+DG+ L +  A +  +
Sbjct: 591 KEAATKALKALEGFEIDGKSLEVKFAQRGAE 621



 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 5/146 (3%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
            S G+ FV   T E A KA++   G  + G+++ V F +  RG E                
Sbjct: 580  SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQ--RGAEDDRETKKGGDAEGGKT 637

Query: 204  DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARV---IFERDTGR--SRGFGFVSFHT 368
               + KV   NL +      ++  F     L   R+        TG   +RGF F+ F T
Sbjct: 638  K--STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTT 695

Query: 369  IQDAXAALQAMDGVELDGRPLRLSLA 446
              +A  A++A+    L GR L L  A
Sbjct: 696  HTEAARAMEALKHTHLLGRHLVLQWA 721



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
           T +++  NL +   +++L + F     +    +   + TG   G  F+ FH  +DA AA 
Sbjct: 220 TSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAY 279

Query: 393 QAMDGVELDGRPLRL 437
           +A+D     GR L +
Sbjct: 280 KALDKTIFQGRLLHV 294



 Score = 29.6 bits (65), Expect = 3.9
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 27  RGFAFVTMATAEEAAKAVQMFNGA-LLGGRTVRVNF 131
           R FAFV    AEEA K  + F+G    GG  V+V+F
Sbjct: 64  RRFAFVGYKDAEEAQKVKEWFDGTYAFGGGKVKVDF 99

---

>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4|
           protein)
          Length = 689

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 39/141 (27%), Positives = 59/141 (41%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +SRG A V     E   KA ++ N   L GR ++V   E P G                 
Sbjct: 108 KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVK--EDPDGEHARRAMQKAGRLGST- 164

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
                  V+  NL + V    LK  F     +V A ++ ++D G+SRG G V+F    +A
Sbjct: 165 -------VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEA 216

Query: 381 XAALQAMDGVELDGRPLRLSL 443
             A+   +G  L  RP+ + +
Sbjct: 217 VQAISMFNGQLLFDRPMHVKM 237



 Score = 35.0 bits (79), Expect = 0.093
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE--VPRG 149
           +SRG   VT   + EA +A+ MFNG LL  R + V   E  +P+G
Sbjct: 201 KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKG 245



 Score = 32.3 bits (72), Expect = 0.61
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
           Y+ +  N+ + V+  +LK   + + G V    +     G+SRG   V F   +    A +
Sbjct: 69  YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 128

Query: 396 AMDGVELDGRPLRL 437
            ++   L GRPL++
Sbjct: 129 VLNKHSLSGRPLKV 142



 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/71 (28%), Positives = 36/71 (50%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +++  NL +      LK  F     ++ A +  E   G+S+G G V F + + A  A + 
Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 670

Query: 399 MDGVELDGRPL 431
           M+G++L GR +
Sbjct: 671 MNGMKLSGREI 681

---

>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 24/78 (30%), Positives = 42/78 (53%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L       AL+  F     +V   ++ +R+T +SRGF FV+  +  DA  A + 
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68

Query: 399 MDGVELDGRPLRLSLAAQ 452
           M+G  LDG+ +++  A +
Sbjct: 69  MNGKSLDGKAIKVEQATK 86



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 125
           D+ T++SRGFAFVT+ +  +A  A +  NG  L G+ ++V
Sbjct: 42  DRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKV 81

---

>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 377
           T  ++  NL +    +     F+   G V AR+  + D  R     S GFGFV F T   
Sbjct: 596 TSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQ 655

Query: 378 AXAALQAMDGVELDGRPL 431
           A AAL AMDG +LD   L
Sbjct: 656 AQAALAAMDGYKLDQHEL 673



 Score = 32.7 bits (73), Expect = 0.46
 Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 2/143 (1%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGR--TVRVNFPEVPRGGEXXXXXXXXXXXXXX 197
            S GF FV   T  +A  A+   +G  L      VR +   +    E              
Sbjct: 642  SMGFGFVDFRTKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARR 701

Query: 198  XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQD 377
                   K+   NL +      +++ F     L   RV  + D   +RGFGF  F + ++
Sbjct: 702  T------KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSARE 754

Query: 378  AXAALQAMDGVELDGRPLRLSLA 446
            A  A+ A+    L GR L L  A
Sbjct: 755  AENAMDALKNTHLLGRRLVLEFA 777

---

>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 32/148 (21%), Positives = 62/148 (41%)
 Frame = +3

Query: 18  DRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXX 197
           D  + + FV M T ++   A+Q  NG  L    ++V   +  R                 
Sbjct: 37  DVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTP------------ 84

Query: 198 XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQD 377
                T K++ GNL    RA  ++  F+    +V   ++        R +GFV    + D
Sbjct: 85  -----TTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGD 131

Query: 378 AXAALQAMDGVELDGRPLRLSLAAQNLQ 461
              A++ ++G  +DG+PL++ ++   ++
Sbjct: 132 VQDAIKELNGRVVDGQPLKVQVSTSRVR 159



 Score = 35.4 bits (80), Expect = 0.072
 Identities = 22/79 (27%), Positives = 38/79 (48%)
 Frame = +3

Query: 210 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAA 389
           GT+K++ GNL    +A  L+  FE    +V   V+        + +GFV   T Q    A
Sbjct: 5   GTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDA 56

Query: 390 LQAMDGVELDGRPLRLSLA 446
           +Q ++G  L+   +++  A
Sbjct: 57  IQNLNGYTLNEFAIKVEAA 75

---

>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 18/162 (11%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQM-----FNGALL----------GGRTVRVNFPEVPRGGE 155
           RSRGF FV+ A  ++  +A+       FNG +L            +T  V     P   E
Sbjct: 64  RSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVEKSTPESSE 123

Query: 156 XXXXXXXXXXXXXXXXDD---GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD 326
                           D    G  K+   N+ W  R         G+ G V    I  + 
Sbjct: 124 KITGQNNEDEDDADGEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKR 183

Query: 327 TGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
            G+  GF FV+   I +   AL+    +++DGR + +  A Q
Sbjct: 184 DGKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDFAVQ 225



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 309 VIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLA 446
           V+ +    RSRGFGFVSF    D   AL      + +G  LR+ +A
Sbjct: 56  VVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIA 101

---

>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 377
           T  ++  NL +   +  L   F+   G V A+V  + D  +     S GFGF  F T + 
Sbjct: 650 TVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQ 709

Query: 378 AXAALQAMDGVELDGRPLRLSLA 446
           A A + AM+G  LDG  L+L L+
Sbjct: 710 ANAVISAMEGTILDGHKLQLKLS 732



 Score = 36.6 bits (83), Expect = 0.032
 Identities = 35/144 (24%), Positives = 52/144 (36%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
            S GF F    T E+A   +    G +L G  +++      R G                 
Sbjct: 696  SMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSH--RQGTSTTNASSKKKKKNQG- 752

Query: 204  DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 K+   NL +      +   F     L   RV  + D   +RGF FV F   ++A 
Sbjct: 753  -----KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAE 806

Query: 384  AALQAMDGVELDGRPLRLSLAAQN 455
             A+  + GV L GR L +    Q+
Sbjct: 807  NAMDQLQGVHLLGRRLVMEFVEQD 830



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
           T +++  N+ +    D  +  F     L    +  +  TG+S+GF +V F    +A  A 
Sbjct: 329 TGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAF 388

Query: 393 QAMDGVELDGRPLRL 437
             +D     GR L +
Sbjct: 389 VELDKQIFQGRLLHI 403



 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 9   KITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           K    +RGFAFV     +EA  A+    G  L GR + + F E
Sbjct: 786 KFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVE 828

---

>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 42/69 (60%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    ++L++ FE    L    V+ + +T RSRGFGFV++ T+++  AA+ A
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73

Query: 399 MDGVELDGR 425
               ++DGR
Sbjct: 74  RPH-KVDGR 81



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXXXXX 173
           D  T RSRGF FVT AT EE   A+       + GR V     V+  +  R G       
Sbjct: 47  DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLT--- 102

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                          K++ G +        L+  FE    +    ++ +R +G+ RGF F
Sbjct: 103 -------------VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 149

Query: 354 VSF 362
           V+F
Sbjct: 150 VTF 152

---

>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 42/69 (60%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    ++L++ FE    L    V+ + +T RSRGFGFV++ T+++  AA+ A
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73

Query: 399 MDGVELDGR 425
               ++DGR
Sbjct: 74  RPH-KVDGR 81



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXXXXX 173
           D  T RSRGF FVT AT EE   A+       + GR V     V+  +  R G       
Sbjct: 47  DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLT--- 102

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                          K++ G +        L+  FE    +    ++ +R +G+ RGF F
Sbjct: 103 -------------VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 149

Query: 354 VSF 362
           V+F
Sbjct: 150 VTF 152

---

>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 42/69 (60%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    ++L++ FE    L    V+ + +T RSRGFGFV++ T+++  AA+ A
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73

Query: 399 MDGVELDGR 425
               ++DGR
Sbjct: 74  RPH-KVDGR 81



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXXXXX 173
           D  T RSRGF FVT AT EE   A+       + GR V     V+  +  R G       
Sbjct: 47  DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLT--- 102

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                          K++ G +        L+  FE    +    ++ +R +G+ RGF F
Sbjct: 103 -------------VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 149

Query: 354 VSF 362
           V+F
Sbjct: 150 VTF 152

---

>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/69 (34%), Positives = 42/69 (60%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    ++L++ FE    L    V+ + +T RSRGFGFV++ T+++  AA+ A
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73

Query: 399 MDGVELDGR 425
               ++DGR
Sbjct: 74  RPH-KVDGR 81



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXXXXX 173
           D  T RSRGF FVT AT EE   A+       + GR V     V+  +  R G       
Sbjct: 47  DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLT--- 102

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                          K++ G +        L+  FE    +    ++ +R +G+ RGF F
Sbjct: 103 -------------VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 149

Query: 354 VSF 362
           V+F
Sbjct: 150 VTF 152

---

>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +     +L+  FEG   +  A VI +R TG+SRG+GFV   T+ D  AA +A
Sbjct: 12  KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV---TMADRAAAERA 68

Query: 399 MDGVE--LDGRPLRLSLA 446
                  +DGR   ++LA
Sbjct: 69  CKDPNPIIDGRKANVNLA 86



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T +SRG+ FVTMA    A +A +  N  ++ GR   VN
Sbjct: 45  DRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVN 84

---

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 6/153 (3%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEE---AAKAVQMFNGALLGGRTVRV---NFPEVPRGGEXXXX 167
           +K +   RGF +VT +  E+   A K +  F G  +     +    N  +     E    
Sbjct: 37  EKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSEC 96

Query: 168 XXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGF 347
                        D   ++   NL +    D LKT F  Q G V    I  +  G+ RGF
Sbjct: 97  PKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVF-AQFGAVLEVNIPRKPDGKMRGF 155

Query: 348 GFVSFHTIQDAXAALQAMDGVELDGRPLRLSLA 446
           GFV F  + +A  AL+ M+  E+ GR + +  A
Sbjct: 156 GFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWA 188



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 19/80 (23%), Positives = 41/80 (51%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++ G L    R++ L+  F     +    V+ E+ +   RGFG+V+F  ++D   AL+ +
Sbjct: 5   LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64

Query: 402 DGVELDGRPLRLSLAAQNLQ 461
                +G  + +++A + L+
Sbjct: 65  --TTFEGCKINVTVAKKKLR 82

---

>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +     +L+  FEG   +  A VI +R TG+SRG+GFV   T+ D  AA +A
Sbjct: 33  KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV---TMADRAAADRA 89

Query: 399 MDGVE--LDGRPLRLSLA 446
                  +DGR   ++LA
Sbjct: 90  CKDPNPIIDGRKANVNLA 107



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D+ T +SRG+ FVTMA    A +A +  N  ++ GR   VN
Sbjct: 66  DRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVN 105

---

>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAXA 386
           V+  NL +   +  L  AF+   G + A+V  + D+       S GFGFV F + + A  
Sbjct: 607 VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEI 666

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A +AMDG  LDG  L+L ++
Sbjct: 667 AQKAMDGHVLDGHKLQLKIS 686



 Score = 36.6 bits (83), Expect = 0.032
 Identities = 34/141 (24%), Positives = 55/141 (39%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
            S GF FV  ++ E A  A +  +G +L G  +++      +  E                
Sbjct: 650  SMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKKAIDS------ 703

Query: 204  DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
                 K+   NL +      ++  F     L   RV  ++    SRGF F  + + ++A 
Sbjct: 704  -----KILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAE 757

Query: 384  AALQAMDGVELDGRPLRLSLA 446
             A+ A+ G  L GR L L  A
Sbjct: 758  HAMSALQGTHLLGRRLVLQYA 778



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
           T +++  NL +  + +  +  F     L    +     TG+ +GF  V F   ++A AA 
Sbjct: 300 TGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAY 359

Query: 393 QAMDGVELDGRPLRL 437
           +A DG    GR L +
Sbjct: 360 EAQDGKIFQGRLLHI 374



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 9   KITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           K    SRGFAF    +A+EA  A+    G  L GR + + + +
Sbjct: 737 KFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYAQ 779

---

>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X|
           protein 1)
          Length = 415

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 28/80 (35%), Positives = 44/80 (55%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           DG  +++  N+ +  R   LKT FE + G+V    I   + G S+GFGFV+    QDA  
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFE-KFGVVSDVEIIFNERG-SKGFGFVTMERPQDAER 207

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A Q + G  ++GR + ++ A
Sbjct: 208 ARQELHGSMIEGRKIEVNCA 227



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           S+GF FVTM   ++A +A Q  +G+++ GR + VN
Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVN 225

---

>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGA-LLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXX 197
           RSRGF FVT A        +Q  NG   L GRT+    P  PR                 
Sbjct: 46  RSRGFGFVTFADPTNVNHVLQ--NGPHTLDGRTIDPK-PCNPR-------------TLQK 89

Query: 198 XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
               G YKV+ G L   V    L+T F     +    ++++++  +SRGFGF+SF
Sbjct: 90  PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF 144



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           +D   K++ G L W    + L   F     ++   V+   ++GRSRGFGFV+F    +  
Sbjct: 3   EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62

Query: 384 AALQ----AMDGVELDGRP 428
             LQ     +DG  +D +P
Sbjct: 63  HVLQNGPHTLDGRTIDPKP 81

---

>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 27/73 (36%), Positives = 36/73 (49%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           KVY GNL   VR   ++  F       G     +  +GR   F FV F   +DA  A++A
Sbjct: 10  KVYVGNLPGDVREKEVEDIFHKY----GRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRA 65

Query: 399 MDGVELDGRPLRL 437
            DG E DGR +R+
Sbjct: 66  RDGYEFDGRRIRV 78

---

>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 403

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 31/139 (22%), Positives = 61/139 (43%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +++GF ++     E+  KAV   + + L GR + +      +  E               
Sbjct: 181 KNKGFCYMFFKNVEQM-KAVLELSESHLNGRNMLI------KDSENYSGRPDKDDLVAMS 233

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 380
            +  +  ++ GNL + V  D L+  F+    +V  R+    D+G+ +GF F+ F   + +
Sbjct: 234 KNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGS 293

Query: 381 XAALQAMDGVELDGRPLRL 437
              L+     ++ GRPLR+
Sbjct: 294 TNELKDKSCRKIAGRPLRM 312

---

>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G L   V    L  AF     +   ++  + ++ R RGF F+ +   +DA AA+  M
Sbjct: 8   IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67

Query: 402 DGVELDGRPLRLSLA 446
           +  EL GR +R++LA
Sbjct: 68  NDSELCGRTIRVNLA 82



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 146
           D  + R RGFAF+    +E+AA A+   N + L GRT+RVN  +  R
Sbjct: 40  DYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAKPVR 86

---

>TRA2_DROME (P19018) Transformer-2 sex-determining protein|
          Length = 264

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 30/47 (63%)
 Frame = +3

Query: 306 RVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLA 446
           +++ +  T RSRGF F+ F  + DA AA  +  G+E+DGR +R+  +
Sbjct: 127 QMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFS 173



 Score = 32.3 bits (72), Expect = 0.61
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           D  T RSRGF F+      +A  A    +G  + GR +RV+F
Sbjct: 131 DAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDF 172

---

>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 24/69 (34%), Positives = 41/69 (59%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    ++L++ FE    L    V+ + +T RSRGFGFV++ T++   AA+ A
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 73

Query: 399 MDGVELDGR 425
               ++DGR
Sbjct: 74  RPH-KVDGR 81



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXXXXX 173
           D  T RSRGF FVT AT E+   A+       + GR V     V+  +  R G       
Sbjct: 47  DPNTKRSRGFGFVTYATVEKVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLT--- 102

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                          K++ G +        L+  FE    +    ++ +R +G+ RGF F
Sbjct: 103 -------------VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 149

Query: 354 VSF 362
           V+F
Sbjct: 150 VTF 152

---

>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
            19)
          Length = 960

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 40/143 (27%), Positives = 55/143 (38%), Gaps = 2/143 (1%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
            S GF FV     E+A KA++   G ++ G  + V   E                      
Sbjct: 773  SMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISE-----RATKPAVTLARKKQVPR 827

Query: 204  DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD-TGRSRGFGFVSFHTIQDA 380
               T K+   N+ +   +  ++  F     L   R+  +   TG  RGFGFV F T QDA
Sbjct: 828  KQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA 887

Query: 381  XAALQAM-DGVELDGRPLRLSLA 446
              A  A+     L GR L L  A
Sbjct: 888  KRAFNALCHSTHLYGRRLVLEWA 910



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 125
           D +T + +GFAF+T    E A KA    +G +  GR + V
Sbjct: 436 DSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHV 475



 Score = 30.8 bits (68), Expect = 1.8
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 7/143 (4%)
 Frame = +3

Query: 30  GFAFVTMATAEEAAKAVQMFNGALLGGRTVRV----NFPEVPRGGEXXXXXXXXXXXXXX 197
           G+ FV  +  EE  +A++  N   +GGR + V    N P      +              
Sbjct: 334 GYIFVDFSNEEEVKQALKC-NREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGEN 392

Query: 198 XXDDG---TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHT 368
             ++    + +++  NL +    + L+  F     L       +  T + +GF F++F  
Sbjct: 393 EEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMF 452

Query: 369 IQDAXAALQAMDGVELDGRPLRL 437
            + A  A   +DG    GR L +
Sbjct: 453 PEHAVKAYSEVDGQVFQGRMLHV 475

---

>NAM8_YEAST (Q00539) Protein NAM8|
          Length = 523

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 2/140 (1%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
           ++G+ FV   ++  AA A+ + NG L+       NFP                       
Sbjct: 105 NQGYCFVDFPSSTHAANAL-LKNGMLIP------NFPNKKLKLNWATSSYSNSNNSLNNV 157

Query: 204 DDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQD 377
             G    ++ G+L   V    L   F  +      A+++ ++ TG S+G+GFV F    +
Sbjct: 158 KSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDE 217

Query: 378 AXAALQAMDGVELDGRPLRL 437
              AL  M GV L+GR +++
Sbjct: 218 QQLALSEMQGVFLNGRAIKV 237

---

>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L W      LK  F     +V   +  + +TGRSRGFGF+ F   +DA +  + 
Sbjct: 69  KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKV 125

Query: 399 MDGVE--LDGR 425
           +D  E  LDGR
Sbjct: 126 LDQKEHRLDGR 136

---

>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2|
           (G-strand-binding protein 2) (RAP1 localization factor
           6)
          Length = 427

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 2/146 (1%)
 Frame = +3

Query: 6   DKITDRS--RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXX 179
           D IT +   RG   V     E    A+  F+GAL   R + V     P            
Sbjct: 152 DIITSKGHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKAT 211

Query: 180 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 359
                    D  ++V+  NL + +   +LK  F+    ++ A V  + + G SRGFG V 
Sbjct: 212 REEI-----DNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFN-GFSRGFGSVI 265

Query: 360 FHTIQDAXAALQAMDGVELDGRPLRL 437
           + T  +   A+   +G+E++GR L +
Sbjct: 266 YPTEDEMIRAIDTFNGMEVEGRVLEV 291

---

>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I|
          Length = 297

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 22/78 (28%), Positives = 42/78 (53%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++   +   ++ D L+  F     +   R++ E  T  SRGFGF+SF T+++A +A+  +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162

Query: 402 DGVELDGRPLRLSLAAQN 455
           +  E  GR L +  A ++
Sbjct: 163 NSQEFYGRVLNVQKAKRS 180



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 125
           + +T  SRGF F++ +T EEA  A+   N     GR + V
Sbjct: 135 EPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNV 174

---

>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 27/96 (28%), Positives = 45/96 (46%)
 Frame = +3

Query: 138 VPRGGEXXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIF 317
           +PRGG                  +   K++ G L +    D+L+  FE    L    V+ 
Sbjct: 1   MPRGGMDDHWPSSDDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMR 60

Query: 318 ERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGR 425
           +  T RSRGFGFV++  +++  A++ A    ++DGR
Sbjct: 61  DPQTKRSRGFGFVTYSCVEEVDASMSARPH-KVDGR 95



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 6/158 (3%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXXXXX 173
           D  T RSRGF FVT +  EE   ++       + GR V     V+  +  R G       
Sbjct: 61  DPQTKRSRGFGFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSARPGAHLTVK- 118

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                          K++ G +        L+  FEG   +    V+ +R +G+ RGF F
Sbjct: 119 ---------------KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAF 163

Query: 354 VSF--HTIQDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
           V+F  H   D    +Q    + L    ++ +L+ Q +Q
Sbjct: 164 VTFDDHDTVD-KIVVQKYHTINLHNCEVKKALSKQEMQ 200

---

>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 27/96 (28%), Positives = 45/96 (46%)
 Frame = +3

Query: 138 VPRGGEXXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIF 317
           +PRGG                  +   K++ G L +    D+L+  FE    L    V+ 
Sbjct: 1   MPRGGMDDHWPSSDDQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMR 60

Query: 318 ERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGR 425
           +  T RSRGFGFV++  +++  A++ A    ++DGR
Sbjct: 61  DPQTKRSRGFGFVTYSCVEEVDASMSARPH-KVDGR 95

---

>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTV--RVNFPEVPRGGEXXXXXXXX 179
           D +T RSRGF FVT        K +      L   +T+  +V FP   +           
Sbjct: 54  DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL-DSKTIDPKVAFPRRAQPKMVTR----- 107

Query: 180 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 359
                      T K++ G L      + +K  FE    +  A ++F++ T R RGFGFV+
Sbjct: 108 -----------TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 156

Query: 360 FHT 368
           F +
Sbjct: 157 FES 159



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 362
           K++ G L W    + L+  F GQ G V   ++  RD  T RSRGFGFV+F
Sbjct: 21  KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68

---

>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 23/72 (31%), Positives = 39/72 (54%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           V+ GNL + V   A++  F     ++  R++ ++ TG  +GFG+V F        AL+ +
Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK-L 347

Query: 402 DGVELDGRPLRL 437
           +  EL GR LR+
Sbjct: 348 NNSELMGRKLRV 359

---

>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTV--RVNFPEVPRGGEXXXXXXXX 179
           D  T RSRGF FVT A      K +   +  L   +T+  +V FP   +           
Sbjct: 55  DPTTKRSRGFGFVTFADPASVDKVLGQPHHEL-DSKTIDPKVAFPRRAQPKMVTR----- 108

Query: 180 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 359
                      T K++ G L      + +K  FE    +  A ++F++ T R RGFGFV+
Sbjct: 109 -----------TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVT 157

Query: 360 F 362
           F
Sbjct: 158 F 158



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
           K++ G L W    D+L+  F     +    V+ +  T RSRGFGFV+F
Sbjct: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69

---

>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export|
           factor-binding protein 1) (REF1-I) (Ally of AML-1 and
           LEF-1) (Aly/REF)
          Length = 254

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 27/80 (33%), Positives = 40/80 (50%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K+   NL +GV    ++  F     L  A V ++R +GRS G   V F    DA  A++ 
Sbjct: 105 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 163

Query: 399 MDGVELDGRPLRLSLAAQNL 458
            +GV LDGRP+ + L    +
Sbjct: 164 YNGVPLDGRPMNIQLVTSQI 183

---

>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2|
          Length = 218

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 28/80 (35%), Positives = 40/80 (50%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K+   NL +GV    ++  F     L  A V ++R +GRS G   V F    DA  A++ 
Sbjct: 76  KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQ 134

Query: 399 MDGVELDGRPLRLSLAAQNL 458
             GV LDGRP+ + L A  +
Sbjct: 135 YKGVPLDGRPMDIQLVASQI 154

---

>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)|
           (Transcriptional coactivator Aly/REF) (bZIP-enhancing
           factor BEF)
          Length = 256

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 27/80 (33%), Positives = 40/80 (50%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K+   NL +GV    ++  F     L  A V ++R +GRS G   V F    DA  A++ 
Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 164

Query: 399 MDGVELDGRPLRLSLAAQNL 458
            +GV LDGRP+ + L    +
Sbjct: 165 YNGVPLDGRPMNIQLVTSQI 184

---

>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTV--RVNFPEVPRGGEXXXXXXXX 179
           D  T RSRGF FVT A      K +   +  L   +T+  +V FP   +           
Sbjct: 55  DPTTKRSRGFGFVTFADPASVDKVLGQPHHEL-DSKTIDPKVAFPRRAQPKMVTR----- 108

Query: 180 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 359
                      T K++ G L      + +K  FE    +  A ++F++ T R RGFGFV+
Sbjct: 109 -----------TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVT 157

Query: 360 F 362
           F
Sbjct: 158 F 158



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
           K++ G L W    D+L+  F     +    V+ +  T RSRGFGFV+F
Sbjct: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69

---

>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 24/69 (34%), Positives = 39/69 (56%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    D+L+  FE    L    V+ +  T RSRGFGFV++  +++  AA+ A
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95

Query: 399 MDGVELDGR 425
               ++DGR
Sbjct: 96  RPH-KVDGR 103

---

>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 24/69 (34%), Positives = 39/69 (56%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    D+L+  FE    L    V+ +  T RSRGFGFV++  +++  AA+ A
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95

Query: 399 MDGVELDGR 425
               ++DGR
Sbjct: 96  RPH-KVDGR 103

---

>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTV--RVNFPEVPRGGEXXXXXXXX 179
           D +T RSRGF FVT        K +      L   +T+  +V FP   +           
Sbjct: 54  DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL-DSKTIDPKVAFPRRAQPKMVTR----- 107

Query: 180 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 359
                      T K++ G L      + +K  FE    +  A ++F++ T R RGFGFV+
Sbjct: 108 -----------TKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 156

Query: 360 FHT 368
           F +
Sbjct: 157 FES 159



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 362
           K++ G L W    + L+  F GQ G V   ++  RD  T RSRGFGFV+F
Sbjct: 21  KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68

---

>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTV--RVNFPEVPRGGEXXXXXXXX 179
           D +T RSRGF FVT        K +      L   +T+  +V FP   +           
Sbjct: 54  DPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL-DSKTIDPKVAFPRRAQPKMVTR----- 107

Query: 180 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 359
                      T K++ G L      + +K  FE    +  A ++F++ T R RGFGFV+
Sbjct: 108 -----------TKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVT 156

Query: 360 FHT 368
           F +
Sbjct: 157 FES 159



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 362
           K++ G L W    + L+  F GQ G V   ++  RD  T RSRGFGFV+F
Sbjct: 21  KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68

---

>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 35/134 (26%), Positives = 53/134 (39%)
 Frame = +3

Query: 36  AFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDGT 215
           A+V       AAKA+Q     +  G  +RV+        +                    
Sbjct: 250 AYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS----------------- 292

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
             V+ GNL + +   AL+  F     +V  R++    TG  RGFG+V F        AL+
Sbjct: 293 --VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK 350

Query: 396 AMDGVELDGRPLRL 437
            ++  EL GR LR+
Sbjct: 351 -LNNSELMGRKLRV 363

---

>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 36/134 (26%), Positives = 53/134 (39%)
 Frame = +3

Query: 36  AFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDGT 215
           A+V       AAKA+Q     +  G  +RV+        +                    
Sbjct: 244 AYVVFKEERAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS----------------- 286

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
             V+ GNL + V   AL+  F     +V  R++    TG  RGFG+V F        AL+
Sbjct: 287 --VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK 344

Query: 396 AMDGVELDGRPLRL 437
            ++  EL GR LR+
Sbjct: 345 -LNNSELMGRKLRV 357

---

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
            19)
          Length = 952

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 2/143 (1%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 203
            S GF FV     E+A KA++   G  + G  + V   E                      
Sbjct: 765  SMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE-----RATKPALTSTRKKQVPK 819

Query: 204  DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD-TGRSRGFGFVSFHTIQDA 380
               T K+   N+ +      ++  F     L   R+  +   TG  RGFGFV F T QDA
Sbjct: 820  KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 879

Query: 381  XAALQAM-DGVELDGRPLRLSLA 446
              A  A+     L GR L L  A
Sbjct: 880  KKAFNALCHSTHLYGRRLVLEWA 902



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 7/143 (4%)
 Frame = +3

Query: 30  GFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE----VPRGGEXXXXXXXXXXXXXX 197
           G+ FV +++ EE  KA++  N   +GGR + V F E      RG                
Sbjct: 333 GYVFVDLSSEEEVKKALKC-NRDYMGGRYIEV-FREKQAPTARGPPKSTTPWQGRTLGEN 390

Query: 198 XXDDG---TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHT 368
             ++    + +++  NL +    + L+  F     L       +  T + +GF FV+F  
Sbjct: 391 EEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 450

Query: 369 IQDAXAALQAMDGVELDGRPLRL 437
            + A  A   +DG    GR L +
Sbjct: 451 PEHAVKAYAEVDGQVFQGRMLHV 473



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 125
           D +T + +GFAFVT    E A KA    +G +  GR + V
Sbjct: 434 DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 473



 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 234 NLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL 392
           NL  G++ +  +  F     L    + F +D G+ R FGF+ F + ++A AAL
Sbjct: 8   NLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAAL 59

---

>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L W      LK  F     +V   +  + +TGRSRGFGF+ F   +D+ +  + 
Sbjct: 76  KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDSSSVEKV 132

Query: 399 MDGVE--LDGR 425
           +D  E  LDGR
Sbjct: 133 LDQKEHRLDGR 143

---

>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 23/76 (30%), Positives = 39/76 (51%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L        LK  F G+ G +   ++ +  T +SRGF F++F    DA  A + 
Sbjct: 9   KLFIGGLNRETNEKMLKAVF-GKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67

Query: 399 MDGVELDGRPLRLSLA 446
           M+G  L G+ +++  A
Sbjct: 68  MNGKSLHGKAIKVEQA 83



 Score = 35.4 bits (80), Expect = 0.072
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVP 143
           T +SRGFAF+T     +A  A +  NG  L G+ ++V   + P
Sbjct: 44  TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86

---

>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 24/69 (34%), Positives = 39/69 (56%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    D+L+  FE    L    V+ +  T RSRGFGFV++  +++  AA+ A
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95

Query: 399 MDGVELDGR 425
               ++DGR
Sbjct: 96  RPH-KVDGR 103

---

>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 16/78 (20%), Positives = 43/78 (55%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           VY G++ +    + +         ++  +++F+  TGRS+G+ F+ F  ++ + +A++ +
Sbjct: 20  VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79

Query: 402 DGVELDGRPLRLSLAAQN 455
           +G +L  R L+   ++ +
Sbjct: 80  NGYQLGSRFLKCGYSSNS 97



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           +D  T RS+G+AF+     E +A AV+  NG  LG R ++  +
Sbjct: 51  FDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 93

---

>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +V+  N+ + ++  A+K     + G V    +F+   G+SRG G V F   +    AL+ 
Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALET 160

Query: 399 MDGVELDGRPLRL 437
           M+  +L GRPL +
Sbjct: 161 MNKYDLSGRPLNI 173



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 20/75 (26%), Positives = 39/75 (52%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +++  NL + +    LK  F     ++ A +  E   G+S+G G V F + + A  A + 
Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFDSPESAEKACRI 581

Query: 399 MDGVELDGRPLRLSL 443
           M+G+++ GR + + L
Sbjct: 582 MNGIKISGREIDVRL 596



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++  NL + V    LK  F    G V    I E   G+SRG G V+F    +A  A+   
Sbjct: 235 IFVANLDFKVGWKKLKEVFS-IAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293

Query: 402 DGVELDGRPLRLSL 443
           +G  L  RP+ + +
Sbjct: 294 NGQFLFDRPMHVKM 307



 Score = 32.3 bits (72), Expect = 0.61
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           +SRG   VT   A EA +A+ MFNG  L  R + V   +
Sbjct: 271 KSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDD 309

---

>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +V+  N+ + ++  A+K     + G V    +F+   G+SRG G V F   +    AL+ 
Sbjct: 92  RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALET 151

Query: 399 MDGVELDGRPLRL 437
           M+  +L GRPL +
Sbjct: 152 MNKYDLSGRPLNI 164



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 20/75 (26%), Positives = 39/75 (52%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +++  NL + +    LK  F     ++ A +  E   G+S+G G V F + + A  A + 
Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFESAESAEKACRI 572

Query: 399 MDGVELDGRPLRLSL 443
           M+G+++ GR + + L
Sbjct: 573 MNGIKISGREIDVRL 587



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++  NL + V    LK  F    G V    I E   G+SRG G V+F    +A  A+   
Sbjct: 226 IFVANLDFKVGWKKLKEVFS-IAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284

Query: 402 DGVELDGRPLRLSL 443
           +G  L  RP+ + +
Sbjct: 285 NGQFLFDRPMHVKM 298



 Score = 32.3 bits (72), Expect = 0.61
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           +SRG   VT   A EA +A+ MFNG  L  R + V   +
Sbjct: 262 KSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDD 300

---

>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL-- 392
           K++ G L W    + L++ F     +V   ++ ++ T +SRGFGFV F         L  
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70

Query: 393 --QAMDGVELDGRP 428
               +DG  +D +P
Sbjct: 71  RPHTLDGRNIDPKP 84



 Score = 35.4 bits (80), Expect = 0.072
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 1/130 (0%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DK T++SRGF FV           V       L GR +    P  PRG +          
Sbjct: 44  DKTTNQSRGFGFVKFKDPN-CVGTVLASRPHTLDGRNIDPK-PCTPRGMQPERTRPKEGW 101

Query: 186 XXXXXXDDG-TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                 D   + K++ G +        L+  F+    +    +I++ +  R RGFGF++F
Sbjct: 102 QKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161

Query: 363 HTIQDAXAAL 392
              Q    A+
Sbjct: 162 EDEQSVDQAV 171

---

>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL-- 392
           K++ G L W    + L++ F     +V   ++ ++ T +SRGFGFV F         L  
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70

Query: 393 --QAMDGVELDGRP 428
               +DG  +D +P
Sbjct: 71  RPHTLDGRNIDPKP 84



 Score = 35.0 bits (79), Expect = 0.093
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 2/131 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRG--GEXXXXXXXX 179
           DK T++SRGF FV           V       L GR +    P  PRG   E        
Sbjct: 44  DKTTNQSRGFGFVKFKDPN-CVGTVLASRPHTLDGRNIDPK-PCTPRGMQPERSRPREGW 101

Query: 180 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 359
                   +  + K++ G +        LK  F     +    +I++ +  R RGFGF++
Sbjct: 102 QQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFIT 161

Query: 360 FHTIQDAXAAL 392
           F   Q    A+
Sbjct: 162 FEDEQSVDQAV 172

---

>TRA2_DROVI (O02008) Transformer-2 sex-determining protein|
          Length = 272

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +3

Query: 306 RVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRL 437
           +++ +  T RSRGF F+ F  + DA  A  A  G+E+DGR +R+
Sbjct: 135 QMVIDAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRV 178



 Score = 29.6 bits (65), Expect = 3.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           D  T RSRGF F+      +A  A     G  + GR +RV++
Sbjct: 139 DAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRVDY 180

---

>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAAL-- 392
           K++ G L W    + L++ F     +V   ++ ++ T +SRGFGFV F         L  
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70

Query: 393 --QAMDGVELDGRP 428
               +DG  +D +P
Sbjct: 71  RPHTLDGRNIDPKP 84



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 1/130 (0%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DK T++SRGF FV           V       L GR +    P  PRG +          
Sbjct: 44  DKTTNQSRGFGFVKFKDPN-CVGTVLASRPHTLDGRNIDPK-PCTPRGMQPERTRPKEGW 101

Query: 186 XXXXXXDDG-TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                 D+  + K++ G +        L+  F+    +    +I++ +  R RGFGF++F
Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161

Query: 363 HTIQDAXAAL 392
              Q    A+
Sbjct: 162 EDEQSVDQAV 171

---

>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           +++GFA+V  AT +    A+Q    AL G   +  +  +                     
Sbjct: 163 QNKGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSS 222

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQD 377
             + +  ++ GNL +      LK  F GQ G +   R++   DTG+ +GFGFV F  I  
Sbjct: 223 KKEPSSILFVGNLDFETTDADLKEHF-GQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDT 281

Query: 378 AXAALQ 395
              A++
Sbjct: 282 CMKAME 287

---

>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           D  T++ +G+ FV+M   +EAA A++  NG  +G R ++V+F
Sbjct: 472 DPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 513



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 20/77 (25%), Positives = 38/77 (49%)
 Frame = +3

Query: 210 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAA 389
           G Y ++  NL       AL   F     +   +++ +  T + +G+GFVS     +A  A
Sbjct: 436 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 495

Query: 390 LQAMDGVELDGRPLRLS 440
           ++A++G  +  R L++S
Sbjct: 496 IRALNGYTMGNRVLQVS 512



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +3

Query: 330 GRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLA 446
           G+S G+GFV++   QDA  A+  ++G+ L  + +++S A
Sbjct: 236 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 274

---

>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           D  T++ +G+ FV+M   +EAA A++  NG  +G R ++V+F
Sbjct: 436 DPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 477



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 20/77 (25%), Positives = 38/77 (49%)
 Frame = +3

Query: 210 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAA 389
           G Y ++  NL       AL   F     +   +++ +  T + +G+GFVS     +A  A
Sbjct: 400 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 459

Query: 390 LQAMDGVELDGRPLRLS 440
           ++A++G  +  R L++S
Sbjct: 460 IRALNGYTMGNRVLQVS 476



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +3

Query: 330 GRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLA 446
           G+S G+GFV++   QDA  A+  ++G+ L  + +++S A
Sbjct: 200 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 238

---

>RAVR1_RAT (Q5XI28) Protein raver-1|
          Length = 748

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 38/149 (25%), Positives = 59/149 (39%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXX 182
           Y + T  S+G+ F      + AA+A     G  LG RT+ V++ +    G+         
Sbjct: 165 YSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA---GQLTPALLHSR 221

Query: 183 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                    G   V           DAL+ A          ++   +D G+ +GF  + +
Sbjct: 222 CLCVDHLPPGFNDV-----------DALRQALSAVYTPTFCQLASGQD-GQLKGFAVLEY 269

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLAA 449
            T + A AA Q  DG+ L G  LR+S  A
Sbjct: 270 ETAEMAEAAQQRADGLALGGSHLRVSFCA 298

---

>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 18/50 (36%), Positives = 32/50 (64%)
 Frame = +3

Query: 294 LVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSL 443
           +V A+V  ++ T  S+ FGFVS+     A AA+Q+M+G ++  + L++ L
Sbjct: 427 VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476

---

>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 18/50 (36%), Positives = 32/50 (64%)
 Frame = +3

Query: 294 LVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSL 443
           +V A+V  ++ T  S+ FGFVS+     A AA+Q+M+G ++  + L++ L
Sbjct: 427 VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476

---

>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 6/153 (3%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEE---AAKAVQMFNGALLGGRTVRV---NFPEVPRGGEXXXX 167
           +K +   RGF +VT +  E+   A K +  F G  +     +    N  +  R  E    
Sbjct: 37  EKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKIDVTVAKKKLRNKSKETRKNENAES 96

Query: 168 XXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGF 347
                        D   ++   NL +    D LK  F    G V    I ++  G+ RGF
Sbjct: 97  PKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFT-HYGTVLEVNIPKKPDGKMRGF 155

Query: 348 GFVSFHTIQDAXAALQAMDGVELDGRPLRLSLA 446
            FV F  + +A  AL+  +  E+ GR + +  A
Sbjct: 156 AFVQFKNLLEAGKALKGANMKEIKGRTVAVDWA 188



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           V+  NL +    +AL    +    L   RV+   DT  S+G  F  F T + A   L A 
Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 385

Query: 402 D------GVELDGRPLRLSLA 446
                  G++LDGR L++ LA
Sbjct: 386 SPEAEGGGLKLDGRQLKVDLA 406



 Score = 33.9 bits (76), Expect = 0.21
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ-- 395
           ++ G L    R+D L+  F     +    V+ E+ +   RGFG+V+F  ++D   AL+  
Sbjct: 5   LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64

Query: 396 -AMDGVELD 419
              +G ++D
Sbjct: 65  TTFEGCKID 73

---

>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1|
          Length = 819

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = +3

Query: 213 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 377
           T  ++  NL +     +L  AF    G V AR+  + D        S GFGF  F T   
Sbjct: 591 TATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQ 650

Query: 378 AXAALQAMDGVELDGRPL 431
           A AAL  M+G  LD   L
Sbjct: 651 AQAALAVMNGYTLDRHTL 668



 Score = 36.6 bits (83), Expect = 0.032
 Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 2/143 (1%)
 Frame = +3

Query: 24   SRGFAFVTMATAEEAAKAVQMFNGALLGGRT--VRVNFPEVPRGGEXXXXXXXXXXXXXX 197
            S GF F    T  +A  A+ + NG  L   T  VR +   +    E              
Sbjct: 637  SMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARR 696

Query: 198  XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQD 377
                   K+   NL +      +++ F     L   RV  + D   +RGFGF  F + ++
Sbjct: 697  T------KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSARE 749

Query: 378  AXAALQAMDGVELDGRPLRLSLA 446
            A  A+ A+    L GR L L  A
Sbjct: 750  AENAMDALKNTHLLGRRLVLEFA 772



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +++  NL +  +   L+  F     +    V F+     S+GF +V +     A  A + 
Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355

Query: 399 MDGVELDGRPLRLSLAAQ 452
           +DG    GR L +  A+Q
Sbjct: 356 LDGKIFQGRLLHILPASQ 373

---

>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 22/69 (31%), Positives = 38/69 (55%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    ++L+  +E    L    V+ +  + RSRGFGFV+F ++ +  AA+ A
Sbjct: 22  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query: 399 MDGVELDGR 425
                +DGR
Sbjct: 82  RPH-SIDGR 89



 Score = 36.6 bits (83), Expect = 0.032
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 2/154 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  + RSRGF FVT ++  E   A+     ++ G    RV  P+     E          
Sbjct: 55  DPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG----RVVEPKRAVAREESGKPGAHVT 110

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF- 362
                      K++ G +        L+  FE    +    +I +R +G+ RGFGFV+F 
Sbjct: 111 VK---------KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 161

Query: 363 -HTIQDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
            H   D    LQ    +      +R +L+ Q +Q
Sbjct: 162 DHDPVD-KIVLQKYHTINGHNAEVRKALSRQEMQ 194

---

>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 22/69 (31%), Positives = 38/69 (55%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    ++L+  +E    L    V+ +  + RSRGFGFV+F ++ +  AA+ A
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69

Query: 399 MDGVELDGR 425
                +DGR
Sbjct: 70  RPH-SIDGR 77



 Score = 36.6 bits (83), Expect = 0.032
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 2/154 (1%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  + RSRGF FVT ++  E   A+     ++ G    RV  P+     E          
Sbjct: 43  DPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG----RVVEPKRAVAREESGKPGAHVT 98

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF- 362
                      K++ G +        L+  FE    +    +I +R +G+ RGFGFV+F 
Sbjct: 99  VK---------KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 149

Query: 363 -HTIQDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
            H   D    LQ    +      +R +L+ Q +Q
Sbjct: 150 DHDPVD-KIVLQKYHTINGHNAEVRKALSRQEMQ 182

---

>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 2/155 (1%)
 Frame = +3

Query: 3   YDKIT--DRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 176
           Y KI+  D  + F FV M +  EA +A+Q  +  +L G  + V   E+ +G         
Sbjct: 25  YGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNV---EMSKGKPKTST--- 78

Query: 177 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 356
                         K++ GN+        L+  FE    +V   ++        + + FV
Sbjct: 79  --------------KLHVGNISSSCTNQELRAKFEEYGPVVECDIV--------KDYAFV 116

Query: 357 SFHTIQDAXAALQAMDGVELDGRPLRLSLAAQNLQ 461
               ++DA  A+  +D     G+ + + L+   L+
Sbjct: 117 HMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLR 151

---

>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E)
          Length = 273

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           D  T++ RGFAFV     E+A  A+   N + + GRT+RVN
Sbjct: 4   DYQTEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVN 44



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 16/40 (40%), Positives = 27/40 (67%)
 Frame = +3

Query: 327 TGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLA 446
           T + RGF FV F  ++DA +A+  M+  E+ GR +R+++A
Sbjct: 7   TEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46

---

>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    ++L+  +E    L    V+ +  + RSRGFGFV+F  + +  AA+ A
Sbjct: 10  KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69

Query: 399 MDGVELDGR 425
                +DGR
Sbjct: 70  RPHT-IDGR 77



 Score = 37.4 bits (85), Expect = 0.019
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 1/153 (0%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  + RSRGF FVT +   E   A+      + G    RV  P+     E          
Sbjct: 43  DPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDG----RVVEPKRAVAREESAKPGAHVT 98

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                      K++ G +        L+  FE    +    +I ++ +G+ RGFGFV+F+
Sbjct: 99  VK---------KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFN 149

Query: 366 TIQDA-XAALQAMDGVELDGRPLRLSLAAQNLQ 461
                    LQ    +      +R +L+ Q +Q
Sbjct: 150 DHDPVDKIVLQKYHTINGHNAEVRKALSKQEMQ 182

---

>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7|
          Length = 267

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 26/80 (32%), Positives = 36/80 (45%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           D   KVY GNLG G     L+ AF     L    +          GF FV F   +DA  
Sbjct: 37  DSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAED 91

Query: 387 ALQAMDGVELDGRPLRLSLA 446
           A++ +DG  + G  +R+ L+
Sbjct: 92  AVRGLDGKVICGSRVRVELS 111

---

>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 24/76 (31%), Positives = 36/76 (47%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L        L+  FE    L    V+    T RSR FGFV++  +++A AA+ A
Sbjct: 8   KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67

Query: 399 MDGVELDGRPLRLSLA 446
                +DG  + L  A
Sbjct: 68  SPHA-VDGNTVELKRA 82



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 36/129 (27%), Positives = 50/129 (38%), Gaps = 2/129 (1%)
 Frame = +3

Query: 15  TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXX 194
           T RSR F FVT +  EEA  A+     A+ G      N  E+ R                
Sbjct: 44  TKRSRCFGFVTYSNVEEADAAMAASPHAVDG------NTVELKRAVSREDSARPGAHAKV 97

Query: 195 XXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF--HT 368
                   K++ G L   V    L   F     +  A +I ++ +G+ RGFGFV F  H 
Sbjct: 98  K-------KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHD 150

Query: 369 IQDAXAALQ 395
             D  A ++
Sbjct: 151 AADKAAVVK 159

---

>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 32/119 (26%), Positives = 49/119 (41%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  T RSRGF FVT +   E   A++     ++ G+TV      VPR  +          
Sbjct: 57  DPTTKRSRGFGFVTFSGKTEVDAAMKQ-RPHIIDGKTVDPK-RAVPRDDKNRSESNVS-- 112

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                    T ++Y   +      D L   F     +  + +I ++ T + RGFGFV+F
Sbjct: 113 ---------TKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 162



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L      D ++  +     +    V+ +  T RSRGFGFV+F    +  AA++ 
Sbjct: 24  KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83

Query: 399 MDGVELDGR 425
              + +DG+
Sbjct: 84  RPHI-IDGK 91

---

>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein|
           11)
          Length = 281

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           V+ GNL   VR + L   F     L    +  +R+ G+ + FGFV F   +    A+  +
Sbjct: 12  VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70

Query: 402 DGVELDGRPLRL 437
           +G+ L GRP+ +
Sbjct: 71  NGIRLYGRPINV 82

---

>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor|
           9G8)
          Length = 238

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 26/79 (32%), Positives = 36/79 (45%)
 Frame = +3

Query: 210 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAA 389
           G  KVY GNLG G     L+ AF     L    +          GF FV F   +DA  A
Sbjct: 9   GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 63

Query: 390 LQAMDGVELDGRPLRLSLA 446
           ++ +DG  + G  +R+ L+
Sbjct: 64  VRGLDGKVICGSRVRVELS 82

---

>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 32/119 (26%), Positives = 48/119 (40%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           D  T RSRGF F+T + +     A Q      + GRTV      VPR             
Sbjct: 58  DPKTKRSRGFGFITYSQSYMIDNA-QNARPHKIDGRTVEPK-RAVPRQEIDSPNAGATVK 115

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                      K++ G L      + L+  F+    +V   ++ ++DTG+ RGF F+ F
Sbjct: 116 -----------KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEF 163



 Score = 36.6 bits (83), Expect = 0.032
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
           K++ G L +    D LK  FE    +V   V+ +  T RSRGFGF+++
Sbjct: 25  KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY 72

---

>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 1/143 (0%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           ++RGFAFV      E+ +A  M    LL GR      P      E               
Sbjct: 177 KNRGFAFVEY----ESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKI 232

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEG-QPGLVGARVIFERDTGRSRGFGFVSFHTIQD 377
                  +Y  NL      + ++  F   +PG V      ER   + R + FV F   +D
Sbjct: 233 -------LYVRNLMLSTSEEMIEKEFNSIKPGAV------ER-VKKIRDYAFVHFSNRED 278

Query: 378 AXAALQAMDGVELDGRPLRLSLA 446
           A  A++A++G  LDG P+ ++LA
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLA 301

---

>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 22/69 (31%), Positives = 39/69 (56%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    ++L+  FE    L    V+ + ++ RSRGFGFV++ +  +  AA+ A
Sbjct: 15  KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74

Query: 399 MDGVELDGR 425
               ++DGR
Sbjct: 75  RPH-KVDGR 82

---

>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 587

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 1/143 (0%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           ++RGFAFV      E+ +A  M    LL GR      P      E               
Sbjct: 177 KNRGFAFVEY----ESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKI 232

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEG-QPGLVGARVIFERDTGRSRGFGFVSFHTIQD 377
                  +Y  NL      + ++  F   +PG V      ER   + R + FV F   +D
Sbjct: 233 -------LYVRNLMLSTSEEMIEKEFNNIKPGAV------ER-VKKIRDYAFVHFSNRED 278

Query: 378 AXAALQAMDGVELDGRPLRLSLA 446
           A  A++A++G  LDG P+ ++LA
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLA 301

---

>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 595

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 1/143 (0%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 200
           ++RGFAFV      E+ +A  M    LL GR      P      E               
Sbjct: 177 KNRGFAFVEY----ESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKI 232

Query: 201 XDDGTYKVYAGNLGWGVRADALKTAFEG-QPGLVGARVIFERDTGRSRGFGFVSFHTIQD 377
                  +Y  NL      + ++  F   +PG V      ER   + R + FV F   +D
Sbjct: 233 -------LYVRNLMLSTSEEMIEKEFNSIKPGAV------ER-VKKIRDYAFVHFSNRED 278

Query: 378 AXAALQAMDGVELDGRPLRLSLA 446
           A  A++A++G  LDG P+ ++LA
Sbjct: 279 AVEAMKALNGKVLDGSPIEVTLA 301

---

>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 19/79 (24%), Positives = 43/79 (54%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++ GN+   V  + ++  F+    +    ++++R+TG  +G+G++ F +      ALQ +
Sbjct: 66  IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQ-L 124

Query: 402 DGVELDGRPLRLSLAAQNL 458
           +G EL G+ + +S    N+
Sbjct: 125 NGGELKGKKIAVSRKRTNI 143

---

>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 728

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 23/74 (31%), Positives = 38/74 (51%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           V+  NL + V    LK  F     +V A ++ ++D G+SRG G V+F    +A  A+   
Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMF 262

Query: 402 DGVELDGRPLRLSL 443
           +G  L  RP+ + +
Sbjct: 263 NGQLLFDRPMHVKM 276



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE--VPRG 149
           +SRG   VT   + EA +A+ MFNG LL  R + V   E  +P+G
Sbjct: 240 KSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKG 284



 Score = 32.3 bits (72), Expect = 0.61
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
           Y+ +  N+ + V+  +LK   + + G V    +     G+SRG   V F   +    A +
Sbjct: 69  YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 128

Query: 396 AMDGVELDGRPLRL 437
            ++   L GRPL++
Sbjct: 129 VLNKHSLSGRPLKV 142



 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/71 (28%), Positives = 36/71 (50%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +++  NL +      LK  F     ++ A +  E   G+S+G G V F + + A  A + 
Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 709

Query: 399 MDGVELDGRPL 431
           M+G++L GR +
Sbjct: 710 MNGMKLSGREI 720

---

>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
           +K++ G L W      LK  F     +V   +  +  TGRSRGFGFV F
Sbjct: 95  WKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF 143



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQM----FNGALLGGRTVRVNFPEVPRGGEXXXXXX 173
           D IT RSRGF FV    +E   K +       NG ++  +  +    + P          
Sbjct: 129 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP---------- 178

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                          K++ G L      + ++  F G   +    +  +  T + RGF F
Sbjct: 179 -------------VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCF 225

Query: 354 VSF 362
           ++F
Sbjct: 226 ITF 228

---

>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)|
           (Translocated in liposarcoma protein) (POMp75) (75 kDa
           DNA-pairing protein)
          Length = 526

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 282 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
           GQP +    +  +R+TG+ +G   VSF     A AA+   DG E  G P+++S A +
Sbjct: 318 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 371

---

>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of|
           deformed) (52-kDa bracketing protein) (B52 protein)
          Length = 375

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 24/68 (35%), Positives = 33/68 (48%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +VY G L +GVR   L+  F+G            RD     G+GFV F   +DA  A+  
Sbjct: 4   RVYVGGLPYGVRERDLERFFKGYGR--------TRDILIKNGYGFVEFEDYRDADDAVYE 55

Query: 399 MDGVELDG 422
           ++G EL G
Sbjct: 56  LNGKELLG 63

---

>RAVR1_HUMAN (Q8IY67) Protein raver-1|
          Length = 606

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 37/149 (24%), Positives = 58/149 (38%)
 Frame = +3

Query: 3   YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXX 182
           Y + T +S+G+ F      + AA+A     G  LG RT+ V++ +    G+         
Sbjct: 165 YSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA---GQLTPALLHSR 221

Query: 183 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
                    G   V           DAL  A          ++   +D G+ +GF  + +
Sbjct: 222 CLCVDRLPPGFNDV-----------DALCRALSAVHSPTFCQLACGQD-GQLKGFAVLEY 269

Query: 363 HTIQDAXAALQAMDGVELDGRPLRLSLAA 449
            T + A  A Q  DG+ L G  LR+S  A
Sbjct: 270 ETAEMAEEAQQQADGLSLGGSHLRVSFCA 298



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 27  RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           +GFA +   TAE A +A Q  +G  LGG  +RV+F
Sbjct: 262 KGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 296

---

>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (Eif3p42) (eIF3g)
          Length = 320

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D+ T +V   NL    R   L+  F     +    +  ++ TG+S+GF F+SFH  +DA 
Sbjct: 237 DNATIRVT--NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294

Query: 384 AALQAMDGVELD 419
            A+  + G   D
Sbjct: 295 RAIAGVSGFGYD 306



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNG 95
           DK T +S+GFAF++    E+AA+A+   +G
Sbjct: 273 DKTTGQSKGFAFISFHRREDAARAIAGVSG 302

---

>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (eIF3g)
          Length = 320

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +3

Query: 204 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAX 383
           D+ T +V   NL    R   L+  F     +    +  ++ TG+S+GF F+SFH  +DA 
Sbjct: 237 DNATIRVT--NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294

Query: 384 AALQAMDGVELD 419
            A+  + G   D
Sbjct: 295 RAIAGVSGFGYD 306



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNG 95
           DK T +S+GFAF++    E+AA+A+   +G
Sbjct: 273 DKTTGQSKGFAFISFHRREDAARAIAGVSG 302

---

>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)|
          Length = 518

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 282 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
           GQP +    +  +R+TG+ +G   VSF     A AA+   DG E  G P+++S A +
Sbjct: 311 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 364

---

>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I|
          Length = 576

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 324 DTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
           D G  RG  F +FH+ ++A   +Q ++G E+ GR LR+    Q
Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQ 310



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 27  RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 131
           RG AF    + EEA   VQ+ NG  + GR +RV +
Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEW 307

---

>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)|
          Length = 512

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 282 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLAAQ 452
           GQP +    +  +R+TG+ +G   VSF     A AA+   DG E  G P+++S A +
Sbjct: 304 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 357

---

>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF---HTIQDAXAA 389
           K++ G L +    ++LK  FE    +V   V+ +  T RSRGFGF+++   H + DA  A
Sbjct: 18  KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77

---

>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40|
          Length = 350

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 6/157 (3%)
 Frame = +3

Query: 3   YDKI--TDRSRGFAFVTMATAEEAAKAVQMFNGALLG--GRTVRVNFPEVPRGGEXXXXX 170
           Y K+   D   GFAFV M    +A  A++  +    G  GR +RV + +  RGG+     
Sbjct: 25  YGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGG 84

Query: 171 XXXXXXXXXXXDDGTYKVY--AGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 344
                          + +   A N     R   L+  FE    +V  R+         R 
Sbjct: 85  GSRRSSSSMRPSKTLFVINFDADN----TRTRDLEKHFEPYGKIVNVRI--------RRN 132

Query: 345 FGFVSFHTIQDAXAALQAMDGVELDGRPLRLSLAAQN 455
           F F+ +   +DA  AL A +  +L  + + +  A ++
Sbjct: 133 FAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKD 169

---

>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor|
           50 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 416

 Score = 36.6 bits (83), Expect = 0.032
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVG-----ARVIFERDTGRSRGFGFVSFHTIQDAX 383
           ++Y GN+ +GV  + +   F  Q  LVG        +        + F F+ F +I +  
Sbjct: 94  RLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETT 153

Query: 384 AALQAMDGVELDGRPLRL 437
            A+ A DG+ L G+ L++
Sbjct: 154 QAM-AFDGINLKGQSLKI 170

---

>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2|
          Length = 991

 Score = 36.6 bits (83), Expect = 0.032
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++   L    RA  LK+ F     ++GA+V+    +  +R +GFV+  T  +A   +  +
Sbjct: 453 LWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 512

Query: 402 DGVELDGRPLRLSLA 446
              EL GR + +  A
Sbjct: 513 HRTELHGRMISVEKA 527

---

>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 36.6 bits (83), Expect = 0.032
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
           +K++ G L W      LK  F     +V   +  +  TGRSRGFGFV F
Sbjct: 97  WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQM----FNGALLGGRTVRVNFPEVPRGGEXXXXXX 173
           D IT RSRGF FV    +E   K +       NG ++  +  +    + P          
Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP---------- 180

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                          K++ G L      + ++  F G   +    +  +  T + RGF F
Sbjct: 181 -------------VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCF 227

Query: 354 VSF 362
           ++F
Sbjct: 228 ITF 230

---

>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 36.6 bits (83), Expect = 0.032
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 362
           +K++ G L W      LK  F     +V   +  +  TGRSRGFGFV F
Sbjct: 97  WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145



 Score = 31.6 bits (70), Expect = 1.0
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQM----FNGALLGGRTVRVNFPEVPRGGEXXXXXX 173
           D IT RSRGF FV    +E   K +       NG ++  +  +    + P          
Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP---------- 180

Query: 174 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 353
                          K++ G L      + ++  F G   +    +  +  T + RGF F
Sbjct: 181 -------------VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCF 227

Query: 354 VSF 362
           ++F
Sbjct: 228 ITF 230

---

>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 729

 Score = 36.6 bits (83), Expect = 0.032
 Identities = 23/74 (31%), Positives = 38/74 (51%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           V+  NL + V    LK  F     +V A ++ ++D G+SRG G V+F    +A  A+   
Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMF 263

Query: 402 DGVELDGRPLRLSL 443
           +G  L  RP+ + +
Sbjct: 264 NGQLLFDRPMHVKM 277



 Score = 35.0 bits (79), Expect = 0.093
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE--VPRG 149
           +SRG   VT   + EA +A+ MFNG LL  R + V   E  +P+G
Sbjct: 241 KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKG 285



 Score = 32.3 bits (72), Expect = 0.61
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
           Y+ +  N+ + V+  +LK   + + G V    +     G+SRG   V F   +    A +
Sbjct: 70  YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 129

Query: 396 AMDGVELDGRPLRL 437
            ++   L GRPL++
Sbjct: 130 VLNKHSLSGRPLKV 143



 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/71 (28%), Positives = 36/71 (50%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +++  NL +      LK  F     ++ A +  E   G+S+G G V F + + A  A + 
Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 710

Query: 399 MDGVELDGRPL 431
           M+G++L GR +
Sbjct: 711 MNGMKLSGREI 721

---

>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 36.2 bits (82), Expect = 0.042
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           DK T +S+GF F+          AV  FNG  + GRT+RV+
Sbjct: 70  DKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVD 110



 Score = 35.8 bits (81), Expect = 0.055
 Identities = 15/72 (20%), Positives = 37/72 (51%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++ G L + +    +   F     +V   ++ ++ TG+S+GF F+ +   +    A+   
Sbjct: 38  IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97

Query: 402 DGVELDGRPLRL 437
           +G+++ GR +R+
Sbjct: 98  NGIKIKGRTIRV 109

---

>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 36.2 bits (82), Expect = 0.042
 Identities = 17/72 (23%), Positives = 37/72 (51%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y GN+ +G  A+ L+  F G   +    ++ ++ +G  +GF ++ F   +    +L A+
Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 231

Query: 402 DGVELDGRPLRL 437
           D     GR +++
Sbjct: 232 DESLFRGRQIKV 243

---

>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 36.2 bits (82), Expect = 0.042
 Identities = 17/72 (23%), Positives = 37/72 (51%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y GN+ +G  A+ L+  F G   +    ++ ++ +G  +GF ++ F   +    +L A+
Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 231

Query: 402 DGVELDGRPLRL 437
           D     GR +++
Sbjct: 232 DESLFRGRQIKV 243

---

>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 36.2 bits (82), Expect = 0.042
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
 Frame = +3

Query: 21  RSRGFAFVTMATAEEAAKAVQ-MFNGAL-LGGRTVRVNF--PEVPRGGEXXXXXXXXXXX 188
           ++RGFAFV   +   AA A + +  G + L G  + V++  PEV    +           
Sbjct: 177 KNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKI---- 232

Query: 189 XXXXXDDGTYKVYAGNLGWGVRADALKTAFEG-QPGLVGARVIFERDTGRSRGFGFVSFH 365
                      +Y  NL      + ++  F   +PG V      ER   + R + FV F 
Sbjct: 233 -----------LYVRNLMLSTSEEMIEKEFNNIKPGAV------ER-VKKIRDYAFVHFS 274

Query: 366 TIQDAXAALQAMDGVELDGRPLRLSLA 446
             +DA  A++A++G  LDG P+ ++LA
Sbjct: 275 NREDAVEAMKALNGKVLDGSPIEVTLA 301

---

>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 36.2 bits (82), Expect = 0.042
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           K++ G L +    ++L+  +E    L    V+ +  + RSRGFGFV+F  + +  AA+ A
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAM-A 68

Query: 399 MDGVELDGR 425
                +DGR
Sbjct: 69  TRPHTIDGR 77

---

>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 36.2 bits (82), Expect = 0.042
 Identities = 17/72 (23%), Positives = 37/72 (51%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y GN+ +G  A+ L+  F G   +    ++ ++ +G  +GF ++ F   +    +L A+
Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 227

Query: 402 DGVELDGRPLRL 437
           D     GR +++
Sbjct: 228 DESLFRGRQIKV 239

---

>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 35.8 bits (81), Expect = 0.055
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++   L    RA  LK  F     +VGA+V+    +  +R +GFV+  T  +A   +  +
Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468

Query: 402 DGVELDGRPLRLSLA 446
              EL GR + +  A
Sbjct: 469 HRTELHGRMISVEKA 483

---

>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 35.8 bits (81), Expect = 0.055
 Identities = 15/73 (20%), Positives = 35/73 (47%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           D    ++   + +      L+  FE    +    +++ + +G+ RG+ F+ +   +D  +
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHS 159

Query: 387 ALQAMDGVELDGR 425
           A +  DG ++DGR
Sbjct: 160 AYKHADGKKIDGR 172

---

>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2|
          Length = 322

 Score = 35.8 bits (81), Expect = 0.055
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 128
           DK T +S+GF F+          AV  FNG  + GRT+RV+
Sbjct: 70  DKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVD 110



 Score = 35.4 bits (80), Expect = 0.072
 Identities = 15/72 (20%), Positives = 37/72 (51%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           ++ G L + +    +   F     +V   ++ ++ TG+S+GF F+ +   +    A+   
Sbjct: 38  IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97

Query: 402 DGVELDGRPLRL 437
           +G+++ GR +R+
Sbjct: 98  NGIKIKGRTIRV 109

---

>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor|
           59 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF59)
          Length = 517

 Score = 35.8 bits (81), Expect = 0.055
 Identities = 23/84 (27%), Positives = 34/84 (40%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           D   K+Y  NL   +  D +    +    L+  ++I     G S+GF F  F    DA  
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366

Query: 387 ALQAMDGVELDGRPLRLSLAAQNL 458
           A+  +DG +  G  L    A   L
Sbjct: 367 AISGLDGKDTYGNKLHAQFACVGL 390

---

>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 35.8 bits (81), Expect = 0.055
 Identities = 15/73 (20%), Positives = 35/73 (47%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           D    ++   + +      L+  FE    +    +++ + +G+ RG+ F+ +   +D  +
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHS 159

Query: 387 ALQAMDGVELDGR 425
           A +  DG ++DGR
Sbjct: 160 AYKHADGKKIDGR 172

---

>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 35.8 bits (81), Expect = 0.055
 Identities = 15/73 (20%), Positives = 35/73 (47%)
 Frame = +3

Query: 207 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXA 386
           D    ++   + +      L+  FE    +    +++ + +G+ RG+ F+ +   +D  +
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHS 159

Query: 387 ALQAMDGVELDGR 425
           A +  DG ++DGR
Sbjct: 160 AYKHADGKKIDGR 172

---

>RBP1_DROME (Q02427) RNA-binding protein 1|
          Length = 144

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           KVY GNLG       ++ AF     L    V          GF FV F   +DA  A +A
Sbjct: 12  KVYVGNLGSSASKHEIEGAFAKYGPLRNVWV-----ARNPPGFAFVEFEDRRDAEDATRA 66

Query: 399 MDGVELDGRPLRLSLAA 449
           +DG    G  +R+ +++
Sbjct: 67  LDGTRCCGTRIRVEMSS 83

---

>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B)
          Length = 931

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +3

Query: 225 YAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMD 404
           +   L    RA  LK  F     +VGA+V+    +  +R +GFV+  T ++A   +  + 
Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490

Query: 405 GVELDGRPLRLSLA 446
             EL G+ + +  A
Sbjct: 491 KTELHGKMISVEKA 504



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 125
           +R + FVTM+TAEEA K +   +   L G+ + V
Sbjct: 468 ARCYGFVTMSTAEEATKCINHLHKTELHGKMISV 501

---

>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 19/81 (23%), Positives = 39/81 (48%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +++ G + +      L+  F     +   +++ +R  G S+G+GFV+F T +DA   LQ 
Sbjct: 34  RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92

Query: 399 MDGVELDGRPLRLSLAAQNLQ 461
            + +    + L +  A +  Q
Sbjct: 93  AEKLNYKDKKLNIGPAIRKQQ 113

---

>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 19/81 (23%), Positives = 39/81 (48%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +++ G + +      L+  F     +   +++ +R  G S+G+GFV+F T +DA   LQ 
Sbjct: 34  RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92

Query: 399 MDGVELDGRPLRLSLAAQNLQ 461
            + +    + L +  A +  Q
Sbjct: 93  AEKLNYKDKKLNIGPAIRKQQ 113

---

>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B) (HSP27 estrogen response element-TATA
           box-binding protein) (HSP27 ERE-TATA-binding protein)
          Length = 915

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +3

Query: 225 YAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAMD 404
           +   L    RA  LK  F     +VGA+V+    +  +R +GFV+  T ++A   +  + 
Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468

Query: 405 GVELDGRPLRLSLA 446
             EL G+ + +  A
Sbjct: 469 KTELHGKMISVEKA 482



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 24  SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 125
           +R + FVTM+TAEEA K +   +   L G+ + V
Sbjct: 446 ARCYGFVTMSTAEEATKCINHLHKTELHGKMISV 479

---

>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
           (Nucleolar phosphoprotein NOPP34-like protein)
          Length = 269

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           +Y G+L  G+    LK+ FE    ++  RV   + TG S+G+GFV F   + A    + M
Sbjct: 47  LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106

Query: 402 DGVELDGRPLR 434
           +   +  R ++
Sbjct: 107 NNYLMGERIIK 117

---

>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 16/78 (20%), Positives = 37/78 (47%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQAM 401
           V+ GN+ + V    +   F     +   +++ + +TG  +G+GF  F   +    A++ +
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68

Query: 402 DGVELDGRPLRLSLAAQN 455
           +  EL  R +R+   + +
Sbjct: 69  NNSELGPRKIRVEFPSND 86



 Score = 33.1 bits (74), Expect = 0.36
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFP 134
           D  T   +G+ F     +E  A AV+  N + LG R +RV FP
Sbjct: 41  DPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFP 83

---

>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein
           homolog)
          Length = 247

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
           Y  Y GNL +      +   F+    +   R++ ++DT + +GF +V F  +     AL 
Sbjct: 41  YTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98

Query: 396 AMDGVELDGRPLRLSLA 446
             DG  L  R LR+ +A
Sbjct: 99  TYDGALLGDRSLRVDIA 115



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           DK TD+ +GF +V     +   +A+  ++GALLG R++RV+  E
Sbjct: 74  DKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 116

---

>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein)
          Length = 247

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +3

Query: 216 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQ 395
           Y  Y GNL +      +   F+    +   R++ ++DT + +GF +V F  +     AL 
Sbjct: 41  YTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98

Query: 396 AMDGVELDGRPLRLSLA 446
             DG  L  R LR+ +A
Sbjct: 99  TYDGALLGDRSLRVDIA 115



 Score = 34.3 bits (77), Expect = 0.16
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 137
           DK TD+ +GF +V     +   +A+  ++GALLG R++RV+  E
Sbjct: 74  DKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 116

---

>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 35.4 bits (80), Expect = 0.072
 Identities = 18/81 (22%), Positives = 40/81 (49%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +++ G + +    + L+  F     +   +++ +R  G S+G+GF++F T +DA   LQ 
Sbjct: 34  RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92

Query: 399 MDGVELDGRPLRLSLAAQNLQ 461
            + +    + L +  A +  Q
Sbjct: 93  AEKLNYKDKKLNIGPAIRKQQ 113

---

>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing|
           factor SRP75) (SRP001LB)
          Length = 494

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 40/157 (25%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
 Frame = +3

Query: 3   YDKI--TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 176
           Y KI   D   G+ FV      +A  AV   NG  L G  V V     PR          
Sbjct: 25  YGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRS 84

Query: 177 XXXXXXXXXDD------GTYKVYAGNLG----WGVRADALKTAFEGQPGLVGARVIFERD 326
                    D         Y++   NL     W    D ++ A        G     +  
Sbjct: 85  GYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQA--------GEVTYADAH 136

Query: 327 TGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRL 437
            GR +  G + F +  D   AL+ +DG E++GR +RL
Sbjct: 137 KGR-KNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172

---

>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Insulin-induced growth response protein
           CL-4) (Delayed-early protein HRS)
          Length = 269

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = +3

Query: 219 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAALQA 398
           +V+ G L    R   ++  F+G   +        RD    RGFGFV F   +DA  A+  
Sbjct: 5   RVFIGRLNPAAREKDVERFFKGYGRI--------RDIDLKRGFGFVEFEDPRDADDAVYE 56

Query: 399 MDGVEL 416
           +DG EL
Sbjct: 57  LDGKEL 62

---

>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1|
          Length = 476

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 29/133 (21%), Positives = 53/133 (39%)
 Frame = +3

Query: 6   DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 185
           DK T  S+G AFV  A + +A +A++  +G  LG        P   +  +          
Sbjct: 59  DKHTKESKGIAFVKFARSSQACRAMEEMHGQCLG--------PNDTKPIKVFIAQSRSSG 110

Query: 186 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 365
                 D+   +++   +      + L+  F+    +    VI  + TG S+G G+V + 
Sbjct: 111 SHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYL 169

Query: 366 TIQDAXAALQAMD 404
               A  A++  D
Sbjct: 170 KPSQAAQAIENCD 182

---

>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 1/141 (0%)
 Frame = +3

Query: 33  FAFVTMATAEEAAKAVQMFNG-ALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDD 209
           FAFV M     A +A++  +G  L  GR + V     PR                     
Sbjct: 37  FAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSR-PR-------------------PL 76

Query: 210 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAA 389
            T+K++ GN+     +  L++ FE +  ++   V+        + + FV      DA AA
Sbjct: 77  NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAA 128

Query: 390 LQAMDGVELDGRPLRLSLAAQ 452
           +  ++G E+ G+ + + L+ +
Sbjct: 129 IAQLNGKEVKGKRINVELSTK 149

---

>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 1/141 (0%)
 Frame = +3

Query: 33  FAFVTMATAEEAAKAVQMFNG-ALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDD 209
           FAFV M     A +A++  +G  L  GR + V     PR                     
Sbjct: 37  FAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSR-PR-------------------PL 76

Query: 210 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAXAA 389
            T+K++ GN+     +  L++ FE +  ++   V+        + + FV      DA AA
Sbjct: 77  NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAA 128

Query: 390 LQAMDGVELDGRPLRLSLAAQ 452
           +  ++G E+ G+ + + L+ +
Sbjct: 129 IAQLNGKEVKGKRINVELSTK 149

---

>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding|
           protein 56) (TAFII68) (TAF(II)68)
          Length = 592

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
 Frame = +3

Query: 222 VYAGNLGWGVRADALKTAFEGQPGLVGAR---------VIFERDTGRSRGFGFVSFHTIQ 374
           ++   LG GV  D +   F+ Q G++            +  ++DTG+ +G   VSF    
Sbjct: 236 IFVQGLGEGVSTDQVGEFFK-QIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPP 294

Query: 375 DAXAALQAMDGVELDGRPLRLSLAAQ 452
            A AA+   DG E  G  +++S A +
Sbjct: 295 SAKAAIDWFDGKEFHGNIIKVSFATR 320

---

>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4|
          Length = 489

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 40/157 (25%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
 Frame = +3

Query: 3   YDKI--TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 176
           Y KI   D   G+ FV      +A  AV   NG  L G  V V     PR          
Sbjct: 25  YGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRS 84

Query: 177 XXXXXXXXXDD------GTYKVYAGNLG----WGVRADALKTAFEGQPGLVGARVIFERD 326
                    D         Y++   NL     W    D ++ A        G     +  
Sbjct: 85  GYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQA--------GEVTYADAH 136

Query: 327 TGRSRGFGFVSFHTIQDAXAALQAMDGVELDGRPLRL 437
            GR +  G + F +  D   AL+ +DG E++GR +RL
Sbjct: 137 KGR-KNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,888,499
Number of Sequences: 219361
Number of extensions: 1491230
Number of successful extensions: 6203
Number of sequences better than 10.0: 360
Number of HSP's better than 10.0 without gapping: 5060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6024
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---