ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet99c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
2dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
3dbj|AK106273.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-08
4dbj|AK106334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-08
5dbj|AK070330.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-08
6dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
7gb|DQ394104.1| Neurospora crassa suppressor of ascus dominance-2... 44 0.17
8gb|AC110285.14| Homo sapiens chromosome 17, clone RP11-1055B8, c... 40 2.6
9dbj|AK147250.1| Mus musculus cDNA, RIKEN full-length enriched li... 40 2.6
10emb|AL928567.6| Mouse DNA sequence from clone RP23-296K20 on chr... 40 2.6

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 53/58 (91%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                         
Query: 147     cggcgagtccttcgccaaagttcttcgagtgctggatcttggagcagtcccgtgacct 204
               ||||||||| |||||||| ||||||||||||||||||||  ||||||||||| |||||
Sbjct: 3091571 cggcgagtcgttcgccaa-gttcttcgagtgctggatctccgagcagtcccgcgacct 3091515



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>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0041E11
          Length = 146335

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 53/58 (91%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                       
Query: 147   cggcgagtccttcgccaaagttcttcgagtgctggatcttggagcagtcccgtgacct 204
             ||||||||| |||||||| ||||||||||||||||||||  ||||||||||| |||||
Sbjct: 35359 cggcgagtcgttcgccaa-gttcttcgagtgctggatctccgagcagtcccgcgacct 35303



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>dbj|AK106273.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G11, full
           insert sequence
          Length = 1336

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 53/58 (91%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                     
Query: 147 cggcgagtccttcgccaaagttcttcgagtgctggatcttggagcagtcccgtgacct 204
           ||||||||| |||||||| ||||||||||||||||||||  ||||||||||| |||||
Sbjct: 124 cggcgagtcgttcgccaa-gttcttcgagtgctggatctccgagcagtcccgcgacct 180



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>dbj|AK106334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-F11, full
           insert sequence
          Length = 1256

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 53/58 (91%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                     
Query: 147 cggcgagtccttcgccaaagttcttcgagtgctggatcttggagcagtcccgtgacct 204
           ||||||||| |||||||| ||||||||||||||||||||  ||||||||||| |||||
Sbjct: 125 cggcgagtcgttcgccaa-gttcttcgagtgctggatctccgagcagtcccgcgacct 181



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>dbj|AK070330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049H21, full
           insert sequence
          Length = 1264

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 53/58 (91%), Gaps = 1/58 (1%)
 Strand = Plus / Plus

                                                                     
Query: 147 cggcgagtccttcgccaaagttcttcgagtgctggatcttggagcagtcccgtgacct 204
           ||||||||| |||||||| ||||||||||||||||||||  ||||||||||| |||||
Sbjct: 128 cggcgagtcgttcgccaa-gttcttcgagtgctggatctccgagcagtcccgcgacct 184



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>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0433F09
          Length = 150150

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 53/58 (91%), Gaps = 1/58 (1%)
 Strand = Plus / Minus

                                                                       
Query: 147   cggcgagtccttcgccaaagttcttcgagtgctggatcttggagcagtcccgtgacct 204
             ||||||||| |||||||| ||||||||||||||||||||  ||||||||||| |||||
Sbjct: 59611 cggcgagtcgttcgccaa-gttcttcgagtgctggatctccgagcagtcccgcgacct 59555



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>gb|DQ394104.1| Neurospora crassa suppressor of ascus dominance-2 (Sad2) pseudogene,
            Sad2-92 allele, complete sequence
          Length = 4048

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 22   cactccaaagccatcgaaacctccaccaac 51
            ||||||||||||||| || |||||||||||
Sbjct: 2653 cactccaaagccatcaaagcctccaccaac 2682



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>gb|AC110285.14| Homo sapiens chromosome 17, clone RP11-1055B8, complete sequence
          Length = 119991

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gagccacttggatcaccatg 90
             ||||||||||||||||||||
Sbjct: 95514 gagccacttggatcaccatg 95533



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>dbj|AK147250.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1002D21 product:B930044J06 protein (Fragment),
           full insert sequence
          Length = 10713

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  gagccacttggatcaccatg 90
           ||||||||||||||||||||
Sbjct: 793 gagccacttggatcaccatg 812



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>emb|AL928567.6| Mouse DNA sequence from clone RP23-296K20 on chromosome 11, complete
             sequence
          Length = 111073

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gagccacttggatcaccatg 90
             ||||||||||||||||||||
Sbjct: 39237 gagccacttggatcaccatg 39256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,119,124
Number of Sequences: 3902068
Number of extensions: 1119124
Number of successful extensions: 70174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70125
Number of HSP's gapped (non-prelim): 49
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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