>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
chloroplast precursor (Chlorophyll a-b binding protein
type II 1B) (CAB) (LHCP)
Length = 274
Score = 66.6 bits (161), Expect = 3e-11
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Frame = +1
Query: 226 FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL- 402
F G+P P++L G PGD+G+D GL+ PENF + +E E+ HCRWAML G + PE L
Sbjct: 70 FSGEP-PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLA 128
Query: 403 ------GLGNWVKA 426
G W KA
Sbjct: 129 RNGVKFGEAVWFKA 142
Score = 33.5 bits (75), Expect = 0.28
Identities = 23/53 (43%), Positives = 25/53 (47%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P D PG FDPLGLA PE F K EI + R AM + G V
Sbjct: 187 GGPLGEVTDPIYPGG-SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV 238
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
chloroplast precursor (CAB) (LHCP) (Fragment)
Length = 255
Score = 63.2 bits (152), Expect = 3e-10
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Frame = +1
Query: 136 LAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFG 282
L+P++ + F T S V+ + W F G+P P++L G PGD+G
Sbjct: 10 LSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYG 68
Query: 283 FDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKA 426
+D GL+ PE F + +E E+ H RWAML G + PE L G W KA
Sbjct: 69 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKA 123
Score = 32.7 bits (73), Expect = 0.47
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P D PG FDPLGLA PE F K E+ + R AM + G V
Sbjct: 168 GGPLGEVTDPIYPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 219
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor|
(LHCII type I CAB-37) (LHCP)
Length = 265
Score = 62.4 bits (150), Expect = 6e-10
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Frame = +1
Query: 244 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL------- 402
P++L G PGD+G+D GL+ PE F R +E E+ HCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTF 125
Query: 403 GLGNWVKA 426
G W KA
Sbjct: 126 GEAVWFKA 133
Score = 35.8 bits (81), Expect = 0.056
Identities = 24/53 (45%), Positives = 26/53 (49%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P LD PG FDPLGLA PE F K EI + R AM + G V
Sbjct: 178 GGPLGEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor|
(LHCII type I CAB-4) (LHCP)
Length = 265
Score = 62.4 bits (150), Expect = 6e-10
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Frame = +1
Query: 244 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL------- 402
P++L G PGD+G+D GL+ PE F R +E E+ HCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 403 GLGNWVKA 426
G W KA
Sbjct: 126 GEAVWFKA 133
Score = 35.8 bits (81), Expect = 0.056
Identities = 24/53 (45%), Positives = 26/53 (49%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P LD PG FDPLGLA PE F K EI + R AM + G V
Sbjct: 178 GGPLGEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor|
(LHCII type I CAB-36) (LHCP)
Length = 265
Score = 62.4 bits (150), Expect = 6e-10
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Frame = +1
Query: 244 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL------- 402
P++L G PGD+G+D GL+ PE F R +E E+ HCRWAML G + PE L
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKF 125
Query: 403 GLGNWVKA 426
G W KA
Sbjct: 126 GEAVWFKA 133
Score = 35.8 bits (81), Expect = 0.056
Identities = 24/53 (45%), Positives = 26/53 (49%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P LD PG FDPLGLA PE F K EI + R AM + G V
Sbjct: 178 GGPLGEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
(LHCII type I CAB-7) (LHCP)
Length = 267
Score = 61.2 bits (147), Expect = 1e-09
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Frame = +1
Query: 244 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL------- 402
P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 403 GLGNWVKA 426
G W KA
Sbjct: 128 GEAVWFKA 135
Score = 33.5 bits (75), Expect = 0.28
Identities = 23/53 (43%), Positives = 25/53 (47%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P D PG FDPLGLA PE F K EI + R AM + G V
Sbjct: 180 GGPLGEVTDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 231
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
(LHCII type I CAB-3) (LHCP)
Length = 263
Score = 60.5 bits (145), Expect = 2e-09
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +1
Query: 226 FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL- 402
F G+P P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L
Sbjct: 59 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 117
Query: 403 ------GLGNWVKA 426
G W KA
Sbjct: 118 RNGVKFGEAVWFKA 131
Score = 32.7 bits (73), Expect = 0.47
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P D PG FDPLGLA PE F K E+ + R AM + G V
Sbjct: 176 GGPLGEVTDPIYPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 227
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,|
chloroplast precursor (DE Chlorophyll a-b binding
protein type I F3) (CAB-F3) (LHCP)
Length = 265
Score = 60.5 bits (145), Expect = 2e-09
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Frame = +1
Query: 226 FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL- 402
F G P P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L
Sbjct: 61 FSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLA 119
Query: 403 ------GLGNWVKA 426
G W KA
Sbjct: 120 KNGVKFGEAVWFKA 133
Score = 32.0 bits (71), Expect = 0.80
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +1
Query: 283 FDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
FDPLGLA PE F K E+ + R AM + G V
Sbjct: 194 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 229
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
(LHCII type II CAB-1A) (LHCP)
Length = 278
Score = 60.5 bits (145), Expect = 2e-09
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +1
Query: 226 FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL- 402
F G+P P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L
Sbjct: 74 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 132
Query: 403 ------GLGNWVKA 426
G W KA
Sbjct: 133 RNGVKFGEAVWFKA 146
Score = 31.2 bits (69), Expect = 1.4
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P D PG FDPLGLA P+ F K EI + R AM + G V
Sbjct: 191 GGPLGEVTDPIYPGG-NFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFV 242
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
chloroplast precursor (Chlorophyll a-b binding protein
type II 1A) (CAB) (LHCP)
Length = 278
Score = 60.5 bits (145), Expect = 2e-09
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +1
Query: 226 FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL- 402
F G+P P++L G PGD+G+D GL+ PE F + +E E+ H RWAML G + PE L
Sbjct: 74 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 132
Query: 403 ------GLGNWVKA 426
G W KA
Sbjct: 133 RNGVKFGEAVWFKA 146
Score = 32.3 bits (72), Expect = 0.62
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P D PG FDPLGLA P+ F K EI + R AM + G V
Sbjct: 191 GGPLGEVTDPIYPGG-NFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 242
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
(LHCII type I CAB-48) (LHCP)
Length = 264
Score = 59.3 bits (142), Expect = 5e-09
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL--- 402
G P P++L G PGD+G+D GL+ PE F + +E E+ HCRWA+ G + PE L
Sbjct: 62 GSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARN 120
Query: 403 ----GLGNWVKA 426
G G W KA
Sbjct: 121 GVKFGEGVWFKA 132
Score = 33.5 bits (75), Expect = 0.28
Identities = 21/49 (42%), Positives = 24/49 (48%)
Frame = +1
Query: 244 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
P +L GS FDPLGL PE F K EI + R AM + G V
Sbjct: 186 PLYLGGS------FDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFV 228
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor|
(LHCII type I CAB) (LHCP)
Length = 269
Score = 58.5 bits (140), Expect = 8e-09
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Frame = +1
Query: 244 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL------- 402
P++L+G GD+G+D GL++ PE F R +E E+ H RWAML G L PE L
Sbjct: 69 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 128
Query: 403 GLGNWVKA 426
G W KA
Sbjct: 129 GEAVWFKA 136
Score = 33.1 bits (74), Expect = 0.36
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P D PG FDPLGLA P+ F K EI + R AM + G V
Sbjct: 181 GGPLGEVTDPIYPGG-SFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV 232
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1|
(Chlorophyll a-b binding protein of LHCII type I) (CAB)
(LHCP) (Fragment)
Length = 206
Score = 58.2 bits (139), Expect = 1e-08
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Frame = +1
Query: 226 FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL- 402
F G+P P++L G PGD+G+D GL+ PE F + +E E+ H WAML G + PE L
Sbjct: 2 FSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLS 60
Query: 403 ------GLGNWVKA 426
G W KA
Sbjct: 61 RNGVKFGEAVWFKA 74
Score = 32.7 bits (73), Expect = 0.47
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P D PG FDPLGLA PE F K E+ + R AM + G V
Sbjct: 119 GGPLGEVTDPIYPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 170
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
precursor (LHCII type I CAB-AB80) (LHCP)
Length = 269
Score = 58.2 bits (139), Expect = 1e-08
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 19/116 (16%)
Frame = +1
Query: 136 LAPSSRS-GRSGLPFCAYATTSGRVTMSAEWFPGQPR-----------PAHLDGSSPGDF 279
L PSS+ G + ATT + + W+ G R P++L G PGD+
Sbjct: 23 LNPSSQELGAARFTMRKSATTKKVASSGSPWY-GPDRVKYLGPFSGESPSYLTGEFPGDY 81
Query: 280 GFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKA 426
G+D GL+ PE F + +E E+ H RWAML G + PE L G W KA
Sbjct: 82 GWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKA 137
Score = 33.5 bits (75), Expect = 0.28
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P +D PG FDPLGLA PE F K E+ + R AM + G V
Sbjct: 182 GGPLGEVVDPLYPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 233
>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast|
precursor (LHCII type I CAB-AB10) (LHCP)
Length = 268
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 214 SAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVP 393
S EW P++L G PGD+G+D GL+ PE F + +E E+ H R AM G + P
Sbjct: 66 SGEW------PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFP 119
Query: 394 EAL-----GLGN--WVKA 426
E L G G W KA
Sbjct: 120 ELLSVMGQGFGEAVWFKA 137
>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,|
chloroplast precursor (CAB) (LHCP)
Length = 273
Score = 53.1 bits (126), Expect = 3e-07
Identities = 34/103 (33%), Positives = 48/103 (46%)
Frame = +1
Query: 148 SRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFER 327
S+S S F TSG W P G PGD+G+D GL+ PE F+R
Sbjct: 48 SKSSSSANQFYGPDATSG-------WDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKR 100
Query: 328 FKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALQTAG 456
++E E+ H R +L G++ PE L + +K + A AG
Sbjct: 101 YRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAG 143
Score = 37.0 bits (84), Expect = 0.025
Identities = 23/53 (43%), Positives = 26/53 (49%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P LD PG+ FDPLGLA P+ F K EI + R AM G V
Sbjct: 187 GGPAGEGLDPLYPGE-AFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFV 238
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
(LHCII type I CAB-2) (LHCP)
Length = 256
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Frame = +1
Query: 112 SAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWFPGQPRPAHL---DGSSPGDFG 282
S G LAPS+ G+ + T+ + S + G R +L G +P
Sbjct: 12 SLAGQAMKLAPSTPE--LGVGRVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLT 69
Query: 283 FDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKA 426
+ GL+ PE F + +E E+ H RWAML G + PE L G W KA
Sbjct: 70 GEFHGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 124
Score = 30.4 bits (67), Expect = 2.3
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P D PG FDPLGLA PE K E+ + R AM + G V
Sbjct: 169 GGPLGEVTDPIYPGG-SFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFV 220
>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2|
(Chlorophyll a-b binding protein type II 2) (CAB) (LHCP)
(Fragment)
Length = 150
Score = 35.0 bits (79), Expect = 0.095
Identities = 24/53 (45%), Positives = 26/53 (49%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P LD PGD FDPLGLA PE K EI + R AM + G V
Sbjct: 63 GGPLGEGLDPLYPGD-AFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFV 114
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor|
(LHCII type I CAB-3B) (LHCP) (Fragments)
Length = 267
Score = 34.3 bits (77), Expect = 0.16
Identities = 23/53 (43%), Positives = 26/53 (49%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P +D PG FDPLGLA PE F K EI + R AM + G V
Sbjct: 180 GGPLGEVVDPLYPGG-SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV 231
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor|
(LHCII type I CAB-3A) (LHCP) (Fragments)
Length = 267
Score = 34.3 bits (77), Expect = 0.16
Identities = 23/53 (43%), Positives = 26/53 (49%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P +D PG FDPLGLA PE F K EI + R AM + G V
Sbjct: 180 GGPLGEVVDPLYPGG-SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV 231
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type I CAB-1D)|
(LHCP) (Fragment)
Length = 116
Score = 34.3 bits (77), Expect = 0.16
Identities = 23/53 (43%), Positives = 26/53 (49%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P +D PG FDPLGLA PE F K EI + R AM + G V
Sbjct: 29 GGPLGEVVDPLYPGG-SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV 80
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor|
(LHCII type I CAB-1C) (LHCP) (Fragments)
Length = 265
Score = 34.3 bits (77), Expect = 0.16
Identities = 23/53 (43%), Positives = 26/53 (49%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P +D PG FDPLGLA PE F K EI + R AM + G V
Sbjct: 178 GGPLGEVVDPLYPGG-SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor|
(LHCII type I CAB-1A) (LHCP) (Fragments)
Length = 265
Score = 34.3 bits (77), Expect = 0.16
Identities = 23/53 (43%), Positives = 26/53 (49%)
Frame = +1
Query: 232 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLV 390
G P +D PG FDPLGLA PE F K EI + R AM + G V
Sbjct: 178 GGPLGEVVDPLYPGG-SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
>NU3M_CANFA (Q9ZZ60) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH|
dehydrogenase subunit 3)
Length = 115
Score = 28.5 bits (62), Expect = 8.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 190 TTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERF 330
T + + + A W P + D +SP + GFDP+G A +P + + F
Sbjct: 12 TLASLLVLIAFWLP--QLNIYTDKTSPYECGFDPMGSARLPFSMKFF 56
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,357,130
Number of Sequences: 219361
Number of extensions: 928045
Number of successful extensions: 3701
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 3461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3688
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)