ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet99c04 |
|---|---|
| Clone Library Name | barley_pub |
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 32.3 bits (72), Expect = 0.50 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +3 Query: 192 VQPQPNQLTYHNGAVLHGDIPVSVLWYGRFTAAQKAI 302 +Q P +L Y + VLH ++ VS+LW G AI Sbjct: 1318 IQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAI 1354
>EFP_MYCPA (Q741J3) Elongation factor P (EF-P)| Length = 187 Score = 30.8 bits (68), Expect = 1.5 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = +3 Query: 186 FLVQPQPNQLTYHNGAVLHGDIPVSV 263 FL++ P Q+ +HNG+ L+ ++PVSV Sbjct: 104 FLLEGMPVQVAFHNGSPLYIELPVSV 129
>PURK_VIBPA (Q87KE0) Phosphoribosylaminoimidazole carboxylase ATPase subunit| (EC 4.1.1.21) (AIR carboxylase) (AIRC) Length = 377 Score = 29.6 bits (65), Expect = 3.2 Identities = 18/67 (26%), Positives = 32/67 (47%) Frame = -1 Query: 224 VVRELVRLGLDQEHELPRARGSRRGCHVSGERH*RQEEEEASLGHLGRGGRACLDLGKRF 45 ++RE + + E LP A + GCH+ + +++ E +GH+ G +L +R Sbjct: 296 LIRETSMVNILGEDTLPEALLAMDGCHI--HWYGKEKREGRKMGHINVCGDYPGELHRRL 353 Query: 44 CVRVRVL 24 C VL Sbjct: 354 CALAEVL 360
>EFP_MYCTU (P64034) Elongation factor P (EF-P)| Length = 187 Score = 29.3 bits (64), Expect = 4.2 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +3 Query: 186 FLVQPQPNQLTYHNGAVLHGDIPVSV 263 FL++ P Q+ +HNG L+ ++PV+V Sbjct: 104 FLLEGMPVQVAFHNGVPLYIELPVTV 129
>EFP_MYCBO (P64035) Elongation factor P (EF-P)| Length = 187 Score = 29.3 bits (64), Expect = 4.2 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +3 Query: 186 FLVQPQPNQLTYHNGAVLHGDIPVSV 263 FL++ P Q+ +HNG L+ ++PV+V Sbjct: 104 FLLEGMPVQVAFHNGVPLYIELPVTV 129
>EFP_COREF (Q8FT34) Elongation factor P (EF-P)| Length = 187 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +3 Query: 186 FLVQPQPNQLTYHNGAVLHGDIPVSV 263 FL++ Q+++H+G L G++PVSV Sbjct: 104 FLLENMRVQVSFHDGEALFGELPVSV 129
>IP6K1_HUMAN (Q92551) Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6| kinase 1) (Inositol hexakisphosphate kinase 1) Length = 441 Score = 28.5 bits (62), Expect = 7.2 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = -1 Query: 263 DGDGDVAVQHGAVVVRELVRLGLDQEHELPRARGSRRGCHVSGERH*RQEEEEASL 96 D DG + + V E V E E PR + SRR H SG +EE+ASL Sbjct: 84 DSDGYINLVAYPYVESETVEQDDTTEREQPRRKHSRRSLHRSGSGS-DHKEEKASL 138
>IP6K1_RAT (Q9ESM0) Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6| kinase 1) (Inositol hexakisphosphate kinase 1) Length = 433 Score = 28.5 bits (62), Expect = 7.2 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = -1 Query: 263 DGDGDVAVQHGAVVVRELVRLGLDQEHELPRARGSRRGCHVSGERH*RQEEEEASL 96 D DG + + V E V E E PR + SRR H SG +EE+ASL Sbjct: 84 DSDGYINLVAYPYVESETVEQDDTPEREQPRRKHSRRSLHRSGSGS-DHKEEKASL 138
>IP6K1_MOUSE (Q6PD10) Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6| kinase 1) (Inositol hexakisphosphate kinase 1) Length = 433 Score = 28.5 bits (62), Expect = 7.2 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = -1 Query: 263 DGDGDVAVQHGAVVVRELVRLGLDQEHELPRARGSRRGCHVSGERH*RQEEEEASL 96 D DG + + V E V E E PR + SRR H SG +EE+ASL Sbjct: 84 DSDGYINLVAYPYVESETVEQDDTPEREQPRRKHSRRSLHRSGSGS-DHKEEKASL 138
>AVIL_HUMAN (O75366) Advillin (p92)| Length = 819 Score = 28.5 bits (62), Expect = 7.2 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -1 Query: 158 RRGCHVSGERH*RQEEEEASLGHLGRGGRACLDLGK 51 +R HV G+R+ R E E S RG LDLGK Sbjct: 134 KRLLHVKGKRNIRATEVEMSWDSFNRGDVFLLDLGK 169
>SYV_NEIG1 (Q5F5W0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 945 Score = 28.5 bits (62), Expect = 7.2 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = -1 Query: 287 RREAAVPEDGDGDVAVQHGAVVVRELVRLGLDQEHELPR 171 R+ AA+PE GD VAV +GA R ++++ +D+ E R Sbjct: 851 RQVAALPESGDAPVAVCNGA---RLMLKVEIDKAAETAR 886
>EFP_CORGL (Q45288) Elongation factor P (EF-P)| Length = 187 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 186 FLVQPQPNQLTYHNGAVLHGDIPVSV 263 FL++ Q+++H G L G++PVSV Sbjct: 104 FLLENMRVQVSFHEGEALFGELPVSV 129
>DPYL3_XENLA (O13022) Dihydropyrimidinase-related protein 3 (DRP-3)| (Neural-specific protein 1) Length = 571 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 192 VQPQPNQLTYHNGAVLHGDIPVSVLWYGRFTAAQKAIVSD 311 + P P Y N + GD+ V+ + F+ AQKAI D Sbjct: 307 LSPDPTTPDYINSLLASGDLQVTGSAHATFSTAQKAIGKD 346
>PHHY_ACIAD (Q03298) P-hydroxybenzoate hydroxylase (EC 1.14.13.2)| (4-hydroxybenzoate 3-monooxygenase) Length = 404 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Frame = -2 Query: 424 CLPTAAALERYSWWM--LLHHWDT 359 CL ER+SWWM LLH ++T Sbjct: 334 CLQRVWKAERFSWWMTHLLHRFET 357 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.134 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,427,255 Number of Sequences: 219361 Number of extensions: 685061 Number of successful extensions: 2432 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2273 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2415 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
