| Clone Name | baet99c03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 224 bits (113), Expect = 1e-55 Identities = 149/161 (92%) Strand = Plus / Plus Query: 156 caaggcggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccgc 215 |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 8715758 caagtcggcgcgggcgtgcgacggctgcctgcgccggcgggcgaggtggtactgcgcggc 8715817 Query: 216 ggacgacgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcgc 275 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 8715818 ggacgacgcgttcctgtgccaggggtgcgacacgtcggtgcactccgcgaacccgctcgc 8715877 Query: 276 gcggaggcatgagcgggtgcgcctgcggcctacgtcgccgc 316 |||| | || |||||| |||| |||||||| ||||||||| Sbjct: 8715878 gcggcgccacgagcggctgcggctgcggccgtcgtcgccgc 8715918 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gcggcggcgggcgaggtggt 205 |||||||||||||||||||| Sbjct: 10626976 gcggcggcgggcgaggtggt 10626995
>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0037N01 Length = 174085 Score = 224 bits (113), Expect = 1e-55 Identities = 149/161 (92%) Strand = Plus / Plus Query: 156 caaggcggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccgc 215 |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 130740 caagtcggcgcgggcgtgcgacggctgcctgcgccggcgggcgaggtggtactgcgcggc 130799 Query: 216 ggacgacgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcgc 275 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 130800 ggacgacgcgttcctgtgccaggggtgcgacacgtcggtgcactccgcgaacccgctcgc 130859 Query: 276 gcggaggcatgagcgggtgcgcctgcggcctacgtcgccgc 316 |||| | || |||||| |||| |||||||| ||||||||| Sbjct: 130860 gcggcgccacgagcggctgcggctgcggccgtcgtcgccgc 130900
>ref|XM_467625.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1942 Score = 167 bits (84), Expect = 3e-38 Identities = 132/148 (89%) Strand = Plus / Plus Query: 155 gcaaggcggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccg 214 ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| | Sbjct: 114 gcaaggcggcgcgcgcgtgcgacagctgcctgcggcggcgggcgcggtggtactgcgcgg 173 Query: 215 cggacgacgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcg 274 |||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct: 174 cggatgacgccttcctgtgccaggggtgcgacacgtcggtgcactcggccaacccgctcg 233 Query: 275 cgcggaggcatgagcgggtgcgcctgcg 302 | || |||| ||||| |||||||||| Sbjct: 234 ccaggcggcacgagcgcctgcgcctgcg 261
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 167 bits (84), Expect = 3e-38 Identities = 132/148 (89%) Strand = Plus / Minus Query: 155 gcaaggcggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccg 214 ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| | Sbjct: 30494154 gcaaggcggcgcgcgcgtgcgacagctgcctgcggcggcgggcgcggtggtactgcgcgg 30494095 Query: 215 cggacgacgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcg 274 |||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct: 30494094 cggatgacgccttcctgtgccaggggtgcgacacgtcggtgcactcggccaacccgctcg 30494035 Query: 275 cgcggaggcatgagcgggtgcgcctgcg 302 | || |||| ||||| |||||||||| Sbjct: 30494034 ccaggcggcacgagcgcctgcgcctgcg 30494007
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 167 bits (84), Expect = 3e-38 Identities = 132/148 (89%) Strand = Plus / Minus Query: 155 gcaaggcggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccg 214 ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| | Sbjct: 6162 gcaaggcggcgcgcgcgtgcgacagctgcctgcggcggcgggcgcggtggtactgcgcgg 6103 Query: 215 cggacgacgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcg 274 |||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct: 6102 cggatgacgccttcctgtgccaggggtgcgacacgtcggtgcactcggccaacccgctcg 6043 Query: 275 cgcggaggcatgagcgggtgcgcctgcg 302 | || |||| ||||| |||||||||| Sbjct: 6042 ccaggcggcacgagcgcctgcgcctgcg 6015
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0617A09 Length = 134804 Score = 167 bits (84), Expect = 3e-38 Identities = 132/148 (89%) Strand = Plus / Minus Query: 155 gcaaggcggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccg 214 ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| | Sbjct: 100202 gcaaggcggcgcgcgcgtgcgacagctgcctgcggcggcgggcgcggtggtactgcgcgg 100143 Query: 215 cggacgacgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcg 274 |||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct: 100142 cggatgacgccttcctgtgccaggggtgcgacacgtcggtgcactcggccaacccgctcg 100083 Query: 275 cgcggaggcatgagcgggtgcgcctgcg 302 | || |||| ||||| |||||||||| Sbjct: 100082 ccaggcggcacgagcgcctgcgcctgcg 100055
>dbj|AK120314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055L13, full insert sequence Length = 1941 Score = 167 bits (84), Expect = 3e-38 Identities = 132/148 (89%) Strand = Plus / Plus Query: 155 gcaaggcggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccg 214 ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| | Sbjct: 114 gcaaggcggcgcgcgcgtgcgacagctgcctgcggcggcgggcgcggtggtactgcgcgg 173 Query: 215 cggacgacgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcg 274 |||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct: 174 cggatgacgccttcctgtgccaggggtgcgacacgtcggtgcactcggccaacccgctcg 233 Query: 275 cgcggaggcatgagcgggtgcgcctgcg 302 | || |||| ||||| |||||||||| Sbjct: 234 ccaggcggcacgagcgcctgcgcctgcg 261
>ref|XM_469510.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1266 Score = 143 bits (72), Expect = 4e-31 Identities = 111/124 (89%) Strand = Plus / Plus Query: 161 cggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccgcggacg 220 ||||||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||||||| Sbjct: 47 cggcgcgggcgtgcgacgggtgcatgcggcggcgggcgcggtggcactgccccgcggacg 106 Query: 221 acgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcgcgcgga 280 |||||||||||||||||| ||||||| | || |||||||| |||||||| || |||||| Sbjct: 107 acgcgttcctgtgccaggcgtgcgacgcgtccgtgcactcggcgaacccgctggcgcggc 166 Query: 281 ggca 284 |||| Sbjct: 167 ggca 170
>gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0018H01 map R1538, complete sequence Length = 142712 Score = 143 bits (72), Expect = 4e-31 Identities = 111/124 (89%) Strand = Plus / Minus Query: 161 cggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccgcggacg 220 ||||||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||||||| Sbjct: 20891 cggcgcgggcgtgcgacgggtgcatgcggcggcgggcgcggtggcactgccccgcggacg 20832 Query: 221 acgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcgcgcgga 280 |||||||||||||||||| ||||||| | || |||||||| |||||||| || |||||| Sbjct: 20831 acgcgttcctgtgccaggcgtgcgacgcgtccgtgcactcggcgaacccgctggcgcggc 20772 Query: 281 ggca 284 |||| Sbjct: 20771 ggca 20768
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 143 bits (72), Expect = 4e-31 Identities = 111/124 (89%) Strand = Plus / Plus Query: 161 cggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccgcggacg 220 ||||||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||||||| Sbjct: 28392151 cggcgcgggcgtgcgacgggtgcatgcggcggcgggcgcggtggcactgccccgcggacg 28392210 Query: 221 acgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcgcgcgga 280 |||||||||||||||||| ||||||| | || |||||||| |||||||| || |||||| Sbjct: 28392211 acgcgttcctgtgccaggcgtgcgacgcgtccgtgcactcggcgaacccgctggcgcggc 28392270 Query: 281 ggca 284 |||| Sbjct: 28392271 ggca 28392274 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 gcggcgcgggcgtgcgacggctgc 183 ||||||| |||||||||||||||| Sbjct: 14122938 gcggcgcaggcgtgcgacggctgc 14122915
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 143 bits (72), Expect = 4e-31 Identities = 111/124 (89%) Strand = Plus / Plus Query: 161 cggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccgcggacg 220 ||||||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||||||| Sbjct: 28483475 cggcgcgggcgtgcgacgggtgcatgcggcggcgggcgcggtggcactgccccgcggacg 28483534 Query: 221 acgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcgcgcgga 280 |||||||||||||||||| ||||||| | || |||||||| |||||||| || |||||| Sbjct: 28483535 acgcgttcctgtgccaggcgtgcgacgcgtccgtgcactcggcgaacccgctggcgcggc 28483594 Query: 281 ggca 284 |||| Sbjct: 28483595 ggca 28483598 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 gcggcgcgggcgtgcgacggctgc 183 ||||||| |||||||||||||||| Sbjct: 14117913 gcggcgcaggcgtgcgacggctgc 14117890
>dbj|AK120563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132M18, full insert sequence Length = 1841 Score = 143 bits (72), Expect = 4e-31 Identities = 111/124 (89%) Strand = Plus / Plus Query: 161 cggcgcgggcgtgcgacggctgcctgcggcggcgggcgaggtggtactgcgccgcggacg 220 ||||||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||||||| Sbjct: 123 cggcgcgggcgtgcgacgggtgcatgcggcggcgggcgcggtggcactgccccgcggacg 182 Query: 221 acgcgttcctgtgccaggggtgcgacacctcggtgcactccgcgaaccctctcgcgcgga 280 |||||||||||||||||| ||||||| | || |||||||| |||||||| || |||||| Sbjct: 183 acgcgttcctgtgccaggcgtgcgacgcgtccgtgcactcggcgaacccgctggcgcggc 242 Query: 281 ggca 284 |||| Sbjct: 243 ggca 246
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 cggggaaggccgcggcggacgg 143 |||||||||||||||||||||| Sbjct: 244245 cggggaaggccgcggcggacgg 244266
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ctgcggcggcgggcgaggtgg 204 ||||||||||||||||||||| Sbjct: 27077813 ctgcggcggcgggcgaggtgg 27077833
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ctgcggcggcgggcgaggtgg 204 ||||||||||||||||||||| Sbjct: 27003407 ctgcggcggcgggcgaggtgg 27003427
>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131300 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 ctgcggcggcgggcgaggtgg 204 ||||||||||||||||||||| Sbjct: 78424 ctgcggcggcgggcgaggtgg 78404
>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145816 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 ctgcggcggcgggcgaggtgg 204 ||||||||||||||||||||| Sbjct: 16706 ctgcggcggcgggcgaggtgg 16726
>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome Length = 1469720 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 gcggcggcgggcgaggtggtactg 209 ||||||||||||| |||||||||| Sbjct: 124206 gcggcggcgggcggggtggtactg 124229
>gb|DQ157460.1| Oryza sativa (indica cultivar-group) strain Suphan Buri 1 Hd1 gene, complete cds Length = 4717 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 ggtgcactccgcgaaccctctcgc 275 |||||||||||||||||| ||||| Sbjct: 1626 ggtgcactccgcgaacccgctcgc 1649
>gb|DQ157459.1| Oryza sativa (indica cultivar-group) strain KDML 105 Hd1 gene, complete cds Length = 4716 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 ggtgcactccgcgaaccctctcgc 275 |||||||||||||||||| ||||| Sbjct: 1626 ggtgcactccgcgaacccgctcgc 1649
>ref|XM_507206.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0091C18.36 patrial mRNA Length = 2514 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aggccgcggcggacggcgcc 147 |||||||||||||||||||| Sbjct: 437 aggccgcggcggacggcgcc 456
>gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, complete sequence Length = 268984 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gccgcggcggacggcgccat 149 |||||||||||||||||||| Sbjct: 221451 gccgcggcggacggcgccat 221432
>ref|NM_009623.1| Mus musculus adenylate cyclase 8 (Adcy8), mRNA Length = 4901 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tttgatgagctgctcgggga 127 |||||||||||||||||||| Sbjct: 4097 tttgatgagctgctcgggga 4116
>gb|BC094231.1| Mus musculus adenylate cyclase 8, mRNA (cDNA clone IMAGE:30535346) Length = 4502 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tttgatgagctgctcgggga 127 |||||||||||||||||||| Sbjct: 3675 tttgatgagctgctcgggga 3694
>ref|XM_532621.2| PREDICTED: Canis familiaris similar to quattro (LOC475398), mRNA Length = 5341 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 cgtcgccgctggccccgcgg 327 |||||||||||||||||||| Sbjct: 3218 cgtcgccgctggccccgcgg 3199
>gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0022F22, from chromosome 3, complete sequence Length = 144268 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 gcggcgcgggcgtgcgacggctgc 183 ||||||| |||||||||||||||| Sbjct: 132617 gcggcgcaggcgtgcgacggctgc 132594
>dbj|AK138244.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230044D13 product:adenylate cyclase 8, full insert sequence Length = 4574 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tttgatgagctgctcgggga 127 |||||||||||||||||||| Sbjct: 4148 tttgatgagctgctcgggga 4167
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aggccgcggcggacggcgcc 147 |||||||||||||||||||| Sbjct: 17192504 aggccgcggcggacggcgcc 17192523
>dbj|AP005761.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1066D09 Length = 183999 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gcggcggcgggcgaggtggt 205 |||||||||||||||||||| Sbjct: 163683 gcggcggcgggcgaggtggt 163702
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18 Length = 154416 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aggccgcggcggacggcgcc 147 |||||||||||||||||||| Sbjct: 116359 aggccgcggcggacggcgcc 116378
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H03 Length = 189893 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aggccgcggcggacggcgcc 147 |||||||||||||||||||| Sbjct: 53129 aggccgcggcggacggcgcc 53148
>dbj|AK110449.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-E04, full insert sequence Length = 2836 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gcggcggcgggcgaggtggt 205 |||||||||||||||||||| Sbjct: 615 gcggcggcgggcgaggtggt 596
>dbj|AK105602.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A07, full insert sequence Length = 2514 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aggccgcggcggacggcgcc 147 |||||||||||||||||||| Sbjct: 437 aggccgcggcggacggcgcc 456
>gb|BC059010.1| Mus musculus cDNA clone IMAGE:6844119, containing frame-shift errors Length = 4149 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tttgatgagctgctcgggga 127 |||||||||||||||||||| Sbjct: 3334 tttgatgagctgctcgggga 3353
>gb|U85021.1|MMU85021 Mus musculus adenylyl cyclase type 8 mRNA, complete cds Length = 4901 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tttgatgagctgctcgggga 127 |||||||||||||||||||| Sbjct: 4097 tttgatgagctgctcgggga 4116
>dbj|AB041839.1| Oryza sativa (indica cultivar-group) Hd1 gene, complete cds, strain:Kasalath Length = 4793 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 ggtgcactccgcgaaccctctcgc 275 |||||||||||||||||| ||||| Sbjct: 1615 ggtgcactccgcgaacccgctcgc 1638 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,108,842 Number of Sequences: 3902068 Number of extensions: 2108842 Number of successful extensions: 47076 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46685 Number of HSP's gapped (non-prelim): 391 length of query: 330 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 308 effective length of database: 17,147,199,772 effective search space: 5281337529776 effective search space used: 5281337529776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)