>APE1_AERPE (O73942) Homing endonuclease I-ApeI (EC 3.1.-.-) (rRNA|
           intron-encoded homing endonuclease 1)
          Length = 222

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +1

Query: 43  KLKGIDGRAPPGVEPAA 93
           KLKGI G AP GVEPAA
Sbjct: 206 KLKGIGGGAPQGVEPAA 222

>YAUF_SCHPO (Q10168) Hypothetical protein C26A3.15c in chromosome I|
          Length = 598

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 49  KGIDGRAPPGVEPAAT-NQPPPSLTKHPTLQ 138
           K  D  A PG   + T ++PPPS  KH TLQ
Sbjct: 395 KPADPSAKPGATASTTPSEPPPSSIKHKTLQ 425

>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2)
          Length = 1470

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 10  LGSGGSMVARLKLKGIDGRAPPGVEPAATNQPPPSLTKHP 129
           L SG S+   L  +G+D R PPG  P     P PS+   P
Sbjct: 871 LSSGSSISEVLSAQGVDLRGPPG-PPGPRGPPGPSIPGPP 909

>OST48_CAEEL (P45971) Probable dolichyl-diphosphooligosaccharide--protein|
           glycosyltransferase 48 kDa subunit precursor (EC
           2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
          Length = 445

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = -1

Query: 155 LSPSQGWRVGCFVNEGGGWLVAAGSTPGGALPSI 54
           LSPS+   +  FV+ GG  LVAAGS  G AL  I
Sbjct: 87  LSPSE---ISKFVDAGGNVLVAAGSNIGDALREI 117

>MUTS_BURMA (Q62J26) DNA mismatch repair protein mutS|
          Length = 891

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 67  APPGVEPAATNQPPPSLTKHPTLQ 138
           APP V+    N+PP + T HP L+
Sbjct: 833 APPVVDEPECNEPPAAATPHPALE 856

>BIN1_HUMAN (O00499) Myc box-dependent-interacting protein 1 (Bridging|
           integrator 1) (Amphiphysin-like protein) (Amphiphysin
           II) (Box-dependent myc-interacting protein 1)
          Length = 593

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 92  AAGSTPGGALPSIPLSFSLATILPPEPK 9
           A G+TPG  LP  P        +PP PK
Sbjct: 319 AGGATPGATLPKSPSQLRKGPPVPPPPK 346

>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 67  APPGVEPAATNQPPPSLTKHPTLQP 141
           APPG  P  T  PPP++T  P   P
Sbjct: 141 APPGSGPGPTPTPPPAVTSAPPGAP 165

>PFTA_RAT (Q04631) Protein farnesyltransferase/geranylgeranyltransferase type|
           I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX
           farnesyltransferase alpha subunit) (Ras proteins
           prenyltransferase alpha) (FTase-alpha) (Type I protein
           geranyl-geranyltransfer
          Length = 377

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 61  GRAPPGVEPAATNQPPPSLTKHPTLQP 141
           G + PG EP    QPPP     P  QP
Sbjct: 8   GESAPGGEPGQPEQPPPPPPPPPAQQP 34

>TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau|
          Length = 775

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 21/63 (33%)
 Frame = +1

Query: 16  SGGSMVARLKLKGIDGR---------APPGVE------------PAATNQPPPSLTKHPT 132
           +G S    +KLKG DG+         APPG +            P A   PP S+TK   
Sbjct: 448 TGSSGAKEMKLKGADGKTKIATPRGAAPPGQKGQANATRIPAKTPPAPKTPPSSVTKQVQ 507

Query: 133 LQP 141
            +P
Sbjct: 508 RRP 510

>DOF35_ARATH (Q9SVC5) Hypothetical Dof zinc finger protein DOF3.5 (AtDOF3.5)|
          Length = 247

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 98  LVAAGSTPGGALPSIPLSFSLATILPPEPKD 6
           L A    PGG  PSI L+   A  L P+P +
Sbjct: 92  LTANSGNPGGGSPSIDLALVYANFLNPKPDE 122

>GUNA_CALSA (P22534) Endoglucanase A precursor (EC 3.2.1.4)|
            (Endo-1,4-beta-glucanase A) (Cellulase A)
          Length = 1742

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 61   GRAPPGVEPAATNQPPPSLTKHPTLQP 141
            G+ P G  PA T  P P++T  PT  P
Sbjct: 1055 GQEPSGATPAPTVTPTPTVTPTPTPAP 1081

>ODO2_PIG (Q9N0F1) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (EC 2.3.1.61) (Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex) (E2) (E2K)
          Length = 455

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 7   SLGSGGSMVARLKLKGIDGRAPPGVEPAATNQPPPSLTKHPTLQP 141
           +L   G+  A+ K       A P  EPA +  PPP     PT  P
Sbjct: 143 TLRKTGAAPAKAKPAEAPAAAAPKAEPAVSAVPPPPAASIPTQMP 187

>POLG_EBHSG (Q96725) Genome polyprotein [Contains: p16; p23; Helicase (2C-like|
            protein) (P2C); 3A-like protein; Viral genome-linked
            protein (VPg); Thiol protease P3C (EC 3.4.22.-);
            RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein
            VP60, subgenomic
          Length = 2334

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 164  PAELSPSQGWRVGCFVNEGGGWLVAAGSTPGGALPSI 54
            P + SP + WRV  F N+   W V     PG  L ++
Sbjct: 1813 PQQASPQESWRVNFFYNDVFTWSVT--DAPGSILYTV 1847


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,113,717
Number of Sequences: 219361
Number of extensions: 729600
Number of successful extensions: 3045
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3012
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)