ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet99b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192094.1| Oryza sativa (japonica cultivar-group), predic... 161 2e-36
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
3dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
4dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
5dbj|AK109457.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
6gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 80 7e-12
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
8dbj|AK108674.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
9ref|NM_192093.1| Oryza sativa (japonica cultivar-group), predic... 48 0.023
10dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 48 0.023
11dbj|AK062283.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.023
12gb|AE017221.1| Thermus thermophilus HB27, complete genome 48 0.023
13ref|XM_613489.2| PREDICTED: Bos taurus similar to CG11412-PA, is... 46 0.092
14gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.36
15dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
16dbj|AK107437.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.36
17gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete se... 44 0.36
18gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F1... 44 0.36
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.36
20gb|DQ397562.1| Cenarchaeum symbiosum clone C05C02, complete sequ... 42 1.4
21gb|DQ397547.1| Cenarchaeum symbiosum clone C04F04, complete sequ... 42 1.4
22gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.4
23emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 1.4
24emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.4
25ref|XM_474826.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
26ref|XM_477222.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
27ref|NM_186788.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
28gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.7
29gb|AC148880.2| Chlamydomonas reinhardtii clone cr-40F11, complet... 40 5.7
30gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.7
31emb|AM039951.1| Xanthomonas campestris pv. vesicatoria plasmid p... 40 5.7
32gb|AF322256.1| Streptomyces antibioticus simocyclinone biosynthe... 40 5.7
33gb|AF324838.1| Streptomyces antibioticus simocyclinone biosynthe... 40 5.7
34emb|AL158075.11| Human DNA sequence from clone RP11-348K2 on chr... 40 5.7
35gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.7
36gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc... 40 5.7
37emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.7
38emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4,... 40 5.7
39emb|AL606590.3|OSJN00031 Oryza sativa genomic DNA, chromosome 4,... 40 5.7
40gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 40 5.7
41ref|NM_001024555.1| Bos taurus hook homolog 2 (HOOK2), mRNA 40 5.7
42dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
43dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
44gb|AC156446.2| Volvox carteri clone JGIAOBO-29H23, complete sequ... 40 5.7
45gb|AC011293.5|AC011293 Homo sapiens BAC clone RP11-75F5 from Y, ... 40 5.7
46gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.7
47dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
48dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
49gb|BT021893.1| Bos taurus hook homolog 2 (Drosophila) (HOOK2), m... 40 5.7
50ref|XM_312094.2| Anopheles gambiae str. PEST ENSANGP00000016751 ... 40 5.7
51dbj|AK107239.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
52gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.7
53emb|AL671011.9| Mouse DNA sequence from clone RP23-95O23 on chro... 40 5.7 
>ref|NM_192094.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1377

 Score =  161 bits (81), Expect = 2e-36
 Identities = 123/137 (89%)
 Strand = Plus / Plus

                                                                       
Query: 266 gacatggcgcgccatgtcgaggccgctggaccggcggcgctcaaggagctcatccgccgg 325
           |||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 256 gacatggcgcgccacgtcgaggccgccgggccggcggcgctcgaggagctcatccgccgg 315

                                                                       
Query: 326 gaggccgaagctgggcggccggtgacgtgcgtcgtgaccaacgccttcgtcccgtgggcg 385
           |||||||| || |||||||||||| ||||||||||| |||||||||| ||| | ||||||
Sbjct: 316 gaggccgaggccgggcggccggtggcgtgcgtcgtggccaacgcctttgtctcctgggcg 375

                            
Query: 386 ctccgcgtggctggcga 402
            ||||||| || |||||
Sbjct: 376 gtccgcgtcgccggcga 392



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                       
Query: 62  ttccagggccacatcaaccccctcatgcgccttggccgccgcctcgccgccaagggcgtg 121
           |||||| ||||| ||||||||||| ||||||| |||||||||||||||| ||||||| | 
Sbjct: 55  ttccagagccacgtcaaccccctcctgcgcctcggccgccgcctcgccggcaagggcctc 114

                                       
Query: 122 ctagtcaccttcaccaccgctctccgcg 149
              ||||||||||| || ||||||||||
Sbjct: 115 agcgtcaccttcactacggctctccgcg 142
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  161 bits (81), Expect = 2e-36
 Identities = 123/137 (89%)
 Strand = Plus / Plus

                                                                            
Query: 266      gacatggcgcgccatgtcgaggccgctggaccggcggcgctcaaggagctcatccgccgg 325
                |||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 28301287 gacatggcgcgccacgtcgaggccgccgggccggcggcgctcgaggagctcatccgccgg 28301346

                                                                            
Query: 326      gaggccgaagctgggcggccggtgacgtgcgtcgtgaccaacgccttcgtcccgtgggcg 385
                |||||||| || |||||||||||| ||||||||||| |||||||||| ||| | ||||||
Sbjct: 28301347 gaggccgaggccgggcggccggtggcgtgcgtcgtggccaacgcctttgtctcctgggcg 28301406

                                 
Query: 386      ctccgcgtggctggcga 402
                 ||||||| || |||||
Sbjct: 28301407 gtccgcgtcgccggcga 28301423



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                            
Query: 62       ttccagggccacatcaaccccctcatgcgccttggccgccgcctcgccgccaagggcgtg 121
                |||||| ||||| ||||||||||| ||||||| |||||||||||||||| ||||||| | 
Sbjct: 28301086 ttccagagccacgtcaaccccctcctgcgcctcggccgccgcctcgccggcaagggcctc 28301145

                                            
Query: 122      ctagtcaccttcaccaccgctctccgcg 149
                   ||||||||||| || ||||||||||
Sbjct: 28301146 agcgtcaccttcactacggctctccgcg 28301173



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                            
Query: 302      gcgctcaaggagctcatccgccgggaggccgaagctgggcggccggtgacgtgcgtcgtg 361
                |||||| ||| ||||||||||||  ||||| | || ||||| |||||| ||| | |||||
Sbjct: 28296868 gcgctcgaggggctcatccgccgccaggccaacgccgggcgcccggtgtcgttcatcgtg 28296927

                                        
Query: 362      accaacgccttcgtcccgtgggcg 385
                 | ||||||||||  |||||||||
Sbjct: 28296928 gcgaacgccttcgcgccgtgggcg 28296951
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>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0478H03
          Length = 167560

 Score =  161 bits (81), Expect = 2e-36
 Identities = 123/137 (89%)
 Strand = Plus / Plus

                                                                          
Query: 266    gacatggcgcgccatgtcgaggccgctggaccggcggcgctcaaggagctcatccgccgg 325
              |||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 135794 gacatggcgcgccacgtcgaggccgccgggccggcggcgctcgaggagctcatccgccgg 135853

                                                                          
Query: 326    gaggccgaagctgggcggccggtgacgtgcgtcgtgaccaacgccttcgtcccgtgggcg 385
              |||||||| || |||||||||||| ||||||||||| |||||||||| ||| | ||||||
Sbjct: 135854 gaggccgaggccgggcggccggtggcgtgcgtcgtggccaacgcctttgtctcctgggcg 135913

                               
Query: 386    ctccgcgtggctggcga 402
               ||||||| || |||||
Sbjct: 135914 gtccgcgtcgccggcga 135930



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                          
Query: 62     ttccagggccacatcaaccccctcatgcgccttggccgccgcctcgccgccaagggcgtg 121
              |||||| ||||| ||||||||||| ||||||| |||||||||||||||| ||||||| | 
Sbjct: 135593 ttccagagccacgtcaaccccctcctgcgcctcggccgccgcctcgccggcaagggcctc 135652

                                          
Query: 122    ctagtcaccttcaccaccgctctccgcg 149
                 ||||||||||| || ||||||||||
Sbjct: 135653 agcgtcaccttcactacggctctccgcg 135680



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                          
Query: 302    gcgctcaaggagctcatccgccgggaggccgaagctgggcggccggtgacgtgcgtcgtg 361
              |||||| ||| ||||||||||||  ||||| | || ||||| |||||| ||| | |||||
Sbjct: 131375 gcgctcgaggggctcatccgccgccaggccaacgccgggcgcccggtgtcgttcatcgtg 131434

                                      
Query: 362    accaacgccttcgtcccgtgggcg 385
               | ||||||||||  |||||||||
Sbjct: 131435 gcgaacgccttcgcgccgtgggcg 131458
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>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0519D04
          Length = 193068

 Score =  161 bits (81), Expect = 2e-36
 Identities = 123/137 (89%)
 Strand = Plus / Plus

                                                                         
Query: 266   gacatggcgcgccatgtcgaggccgctggaccggcggcgctcaaggagctcatccgccgg 325
             |||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 16387 gacatggcgcgccacgtcgaggccgccgggccggcggcgctcgaggagctcatccgccgg 16446

                                                                         
Query: 326   gaggccgaagctgggcggccggtgacgtgcgtcgtgaccaacgccttcgtcccgtgggcg 385
             |||||||| || |||||||||||| ||||||||||| |||||||||| ||| | ||||||
Sbjct: 16447 gaggccgaggccgggcggccggtggcgtgcgtcgtggccaacgcctttgtctcctgggcg 16506

                              
Query: 386   ctccgcgtggctggcga 402
              ||||||| || |||||
Sbjct: 16507 gtccgcgtcgccggcga 16523



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                         
Query: 62    ttccagggccacatcaaccccctcatgcgccttggccgccgcctcgccgccaagggcgtg 121
             |||||| ||||| ||||||||||| ||||||| |||||||||||||||| ||||||| | 
Sbjct: 16186 ttccagagccacgtcaaccccctcctgcgcctcggccgccgcctcgccggcaagggcctc 16245

                                         
Query: 122   ctagtcaccttcaccaccgctctccgcg 149
                ||||||||||| || ||||||||||
Sbjct: 16246 agcgtcaccttcactacggctctccgcg 16273



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                         
Query: 302   gcgctcaaggagctcatccgccgggaggccgaagctgggcggccggtgacgtgcgtcgtg 361
             |||||| ||| ||||||||||||  ||||| | || ||||| |||||| ||| | |||||
Sbjct: 11968 gcgctcgaggggctcatccgccgccaggccaacgccgggcgcccggtgtcgttcatcgtg 12027

                                     
Query: 362   accaacgccttcgtcccgtgggcg 385
              | ||||||||||  |||||||||
Sbjct: 12028 gcgaacgccttcgcgccgtgggcg 12051
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>dbj|AK109457.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C10, full
           insert sequence
          Length = 1849

 Score =  161 bits (81), Expect = 2e-36
 Identities = 123/137 (89%)
 Strand = Plus / Plus

                                                                       
Query: 266 gacatggcgcgccatgtcgaggccgctggaccggcggcgctcaaggagctcatccgccgg 325
           |||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 378 gacatggcgcgccacgtcgaggccgccgggccggcggcgctcgaggagctcatccgccgg 437

                                                                       
Query: 326 gaggccgaagctgggcggccggtgacgtgcgtcgtgaccaacgccttcgtcccgtgggcg 385
           |||||||| || |||||||||||| ||||||||||| |||||||||| ||| | ||||||
Sbjct: 438 gaggccgaggccgggcggccggtggcgtgcgtcgtggccaacgcctttgtctcctgggcg 497

                            
Query: 386 ctccgcgtggctggcga 402
            ||||||| || |||||
Sbjct: 498 gtccgcgtcgccggcga 514



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                       
Query: 62  ttccagggccacatcaaccccctcatgcgccttggccgccgcctcgccgccaagggcgtg 121
           |||||| ||||| ||||||||||| ||||||| |||||||||||||||| ||||||| | 
Sbjct: 177 ttccagagccacgtcaaccccctcctgcgcctcggccgccgcctcgccggcaagggcctc 236

                                       
Query: 122 ctagtcaccttcaccaccgctctccgcg 149
              ||||||||||| || ||||||||||
Sbjct: 237 agcgtcaccttcactacggctctccgcg 264
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>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23,
              complete sequence
          Length = 191765

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                          
Query: 65     cagggccacatcaaccccctcatgcgccttggccgccgcctcgccgccaagggcgtgcta 124
              ||||||||| ||||||| ||| | ||||| ||||||||||||||||||| |||| | || 
Sbjct: 142091 cagggccacgtcaacccgctcctccgcctcggccgccgcctcgccgccacgggcctcctc 142032

                              
Query: 125    gtcaccttcaccaccg 140
              ||||||||||||||||
Sbjct: 142031 gtcaccttcaccaccg 142016



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                          
Query: 327    aggccgaagctgggcggccggtgacgtgcgtcgtgaccaacgccttcgtcccgtgggcgc 386
              ||||||| || || ||||||||||||| |||||||| ||||  |||||| ||||||||||
Sbjct: 141808 aggccgacgccggccggccggtgacgttcgtcgtgaacaacatcttcgtgccgtgggcgc 141749

                
Query: 387    tc 388
              ||
Sbjct: 141748 tc 141747
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                            
Query: 65       cagggccacatcaaccccctcatgcgccttggccgccgcctcgccgccaagggcgtgcta 124
                ||||||||| ||||||| ||| | ||||| ||||||||||||||||||| |||| | || 
Sbjct: 27267123 cagggccacgtcaacccgctcctccgcctcggccgccgcctcgccgccacgggcctcctc 27267064

                                
Query: 125      gtcaccttcaccaccg 140
                ||||||||||||||||
Sbjct: 27267063 gtcaccttcaccaccg 27267048



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                            
Query: 327      aggccgaagctgggcggccggtgacgtgcgtcgtgaccaacgccttcgtcccgtgggcgc 386
                ||||||| || || ||||||||||||| |||||||| ||||  |||||| ||||||||||
Sbjct: 27266840 aggccgacgccggccggccggtgacgttcgtcgtgaacaacatcttcgtgccgtgggcgc 27266781

                  
Query: 387      tc 388
                ||
Sbjct: 27266780 tc 27266779
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>dbj|AK108674.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-H12, full
           insert sequence
          Length = 1783

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                       
Query: 65  cagggccacatcaaccccctcatgcgccttggccgccgcctcgccgccaagggcgtgcta 124
           ||||||||| ||||||| ||| | ||||| ||||||||||||||||||| |||| | || 
Sbjct: 147 cagggccacgtcaacccgctcctccgcctcggccgccgcctcgccgccacgggcctcctc 206

                           
Query: 125 gtcaccttcaccaccg 140
           ||||||||||||||||
Sbjct: 207 gtcaccttcaccaccg 222



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 327 aggccgaagctgggcggccggtgacgtgcgtcgtgaccaacgccttcgtcccgtgggcgc 386
           ||||||| || || ||||||||||||| |||||||| ||||  |||||| ||||||||||
Sbjct: 430 aggccgacgccggccggccggtgacgttcgtcgtgaacaacatcttcgtgccgtgggcgc 489

             
Query: 387 tc 388
           ||
Sbjct: 490 tc 491
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>ref|NM_192093.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1341

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                       
Query: 302 gcgctcaaggagctcatccgccgggaggccgaagctgggcggccggtgacgtgcgtcgtg 361
           |||||| ||| ||||||||||||  ||||| | || ||||| |||||| ||| | |||||
Sbjct: 379 gcgctcgaggggctcatccgccgccaggccaacgccgggcgcccggtgtcgttcatcgtg 438

                                   
Query: 362 accaacgccttcgtcccgtgggcg 385
            | ||||||||||  |||||||||
Sbjct: 439 gcgaacgccttcgcgccgtgggcg 462
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 143     ctccgcgcggccgtccgcgtggaggagg 170
               |||| |||||||||||||||||||||||
Sbjct: 1704819 ctcctcgcggccgtccgcgtggaggagg 1704846
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>dbj|AK062283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C08, full
           insert sequence
          Length = 1583

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                       
Query: 302 gcgctcaaggagctcatccgccgggaggccgaagctgggcggccggtgacgtgcgtcgtg 361
           |||||| ||| ||||||||||||  ||||| | || ||||| |||||| ||| | |||||
Sbjct: 354 gcgctcgaggggctcatccgccgccaggccaacgccgggcgcccggtgtcgttcatcgtg 413

                                   
Query: 362 accaacgccttcgtcccgtgggcg 385
            | ||||||||||  |||||||||
Sbjct: 414 gcgaacgccttcgcgccgtgggcg 437
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 143     ctccgcgcggccgtccgcgtggaggagg 170
               |||| |||||||||||||||||||||||
Sbjct: 1393052 ctcctcgcggccgtccgcgtggaggagg 1393079
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>ref|XM_613489.2| PREDICTED: Bos taurus similar to CG11412-PA, isoform A (LOC533922),
           mRNA
          Length = 2259

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 86  atgcgccttggccgccgcctcgccgcc 112
           |||| ||||||||||||||||||||||
Sbjct: 298 atgccccttggccgccgcctcgccgcc 272
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>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0034K24, complete sequence
          Length = 142852

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 87    tgcgccttggccgccgcctcgccgcc 112
             |||||| |||||||||||||||||||
Sbjct: 79547 tgcgccatggccgccgcctcgccgcc 79572
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 87       tgcgccttggccgccgcctcgccgcc 112
                |||||| |||||||||||||||||||
Sbjct: 23307428 tgcgccatggccgccgcctcgccgcc 23307403
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>dbj|AK107437.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-B01, full
           insert sequence
          Length = 1358

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 87  tgcgccttggccgccgcctcgccgcc 112
           |||||| |||||||||||||||||||
Sbjct: 888 tgcgccatggccgccgcctcgccgcc 863
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>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence
          Length = 77605

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 87    tgcgccttggccgccgcctcgccgcc 112
             |||||| |||||||||||||||||||
Sbjct: 72459 tgcgccatggccgccgcctcgccgcc 72484
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>gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F19 php20725 region, complete
             sequence
          Length = 70311

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 87    tgcgccttggccgccgcctcgccgcc 112
             |||||| |||||||||||||||||||
Sbjct: 65154 tgcgccatggccgccgcctcgccgcc 65179
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 87       tgcgccttggccgccgcctcgccgcc 112
                |||||| |||||||||||||||||||
Sbjct: 23617338 tgcgccatggccgccgcctcgccgcc 23617313
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>gb|DQ397562.1| Cenarchaeum symbiosum clone C05C02, complete sequence
          Length = 42705

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 208   gcgcctgcacggcggcgggct 228
             |||||||||||||||||||||
Sbjct: 36077 gcgcctgcacggcggcgggct 36097
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>gb|DQ397547.1| Cenarchaeum symbiosum clone C04F04, complete sequence
          Length = 39000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 208   gcgcctgcacggcggcgggct 228
             |||||||||||||||||||||
Sbjct: 31685 gcgcctgcacggcggcgggct 31705
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 257     gacgccggcgacatggcgcgc 277
               |||||||||||||||||||||
Sbjct: 2386935 gacgccggcgacatggcgcgc 2386955
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     tgcgccttggccgccgcctcg 107
              |||||||||||||||||||||
Sbjct: 975661 tgcgccttggccgccgcctcg 975641
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    agcgcctgcacggcggcgggc 227
              |||||||||||||||||||||
Sbjct: 125877 agcgcctgcacggcggcgggc 125897
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>ref|XM_474826.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1137

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 377 ccgtgggcgctccgcgtggc 396
           ||||||||||||||||||||
Sbjct: 418 ccgtgggcgctccgcgtggc 437
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>ref|XM_477222.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1618

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 62  ttccagggccacatcaaccc 81
           ||||||||||||||||||||
Sbjct: 128 ttccagggccacatcaaccc 147
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>ref|NM_186788.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1440

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  tccagggccacatcaacccc 82
           ||||||||||||||||||||
Sbjct: 83  tccagggccacatcaacccc 102
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    gcgcctgcacggcggcgggc 227
              ||||||||||||||||||||
Sbjct: 553360 gcgcctgcacggcggcgggc 553379
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>gb|AC148880.2| Chlamydomonas reinhardtii clone cr-40F11, complete sequence
          Length = 56458

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 205  cgagcgcctgcacggcggcgggct 228
            |||||||||| |||||||||||||
Sbjct: 7798 cgagcgcctgaacggcggcgggct 7821
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 208     gcgcctgcacggcggcgggc 227
               ||||||||||||||||||||
Sbjct: 3221412 gcgcctgcacggcggcgggc 3221393
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>emb|AM039951.1| Xanthomonas campestris pv. vesicatoria plasmid pXCV183, complete genome
          Length = 182572

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    cgccttggccgccgcctcgc 108
             ||||||||||||||||||||
Sbjct: 39745 cgccttggccgccgcctcgc 39726
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>gb|AF322256.1| Streptomyces antibioticus simocyclinone biosynthetic gene cluster,
            partial sequence
          Length = 39428

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 200  cggttcgagcgcctgcacggcggc 223
            |||||||||||||||| |||||||
Sbjct: 4054 cggttcgagcgcctgcccggcggc 4077
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>gb|AF324838.1| Streptomyces antibioticus simocyclinone biosynthetic gene cluster,
            partial sequence
          Length = 34869

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 200  cggttcgagcgcctgcacggcggc 223
            |||||||||||||||| |||||||
Sbjct: 8336 cggttcgagcgcctgcccggcggc 8359
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>emb|AL158075.11| Human DNA sequence from clone RP11-348K2 on chromosome 9q33.1-34.13
             Contains two novel genes and part of the NR6A1 gene for
             nuclear receptor (subfamily 6, group A) member 1, complete
             sequence
          Length = 102867

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    tccattccagggccacatca 77
             ||||||||||||||||||||
Sbjct: 17583 tccattccagggccacatca 17602
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 256     cgacgccggcgacatggcgc 275
               ||||||||||||||||||||
Sbjct: 1857418 cgacgccggcgacatggcgc 1857399
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>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete
             sequence
          Length = 120132

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    cgccgcctcgccgccaaggg 117
             ||||||||||||||||||||
Sbjct: 87528 cgccgcctcgccgccaaggg 87509
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 208     gcgcctgcacggcggcgggc 227
               ||||||||||||||||||||
Sbjct: 2951277 gcgcctgcacggcggcgggc 2951258
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>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05,
              complete sequence
          Length = 149134

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    ccgtgggcgctccgcgtggc 396
              ||||||||||||||||||||
Sbjct: 147181 ccgtgggcgctccgcgtggc 147162
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>emb|AL606590.3|OSJN00031 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052O21,
            complete sequence
          Length = 166475

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 377  ccgtgggcgctccgcgtggc 396
            ||||||||||||||||||||
Sbjct: 5501 ccgtgggcgctccgcgtggc 5482
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>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    cgccttggccgccgcctcgc 108
             ||||||||||||||||||||
Sbjct: 31075 cgccttggccgccgcctcgc 31094
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>ref|NM_001024555.1| Bos taurus hook homolog 2 (HOOK2), mRNA
          Length = 2739

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 378  cgtgggcgctccgcgtggctggcg 401
            |||| |||||||||||||||||||
Sbjct: 1136 cgtgtgcgctccgcgtggctggcg 1113
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 377     ccgtgggcgctccgcgtggc 396
               ||||||||||||||||||||
Sbjct: 6984310 ccgtgggcgctccgcgtggc 6984291
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 62      ttccagggccacatcaaccc 81
               ||||||||||||||||||||
Sbjct: 7932856 ttccagggccacatcaaccc 7932875



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 63      tccagggccacatcaacccc 82
               ||||||||||||||||||||
Sbjct: 7871002 tccagggccacatcaacccc 7871021
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>gb|AC156446.2| Volvox carteri clone JGIAOBO-29H23, complete sequence
          Length = 31927

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    ccgccgcctcgccgccaagg 116
             ||||||||||||||||||||
Sbjct: 13253 ccgccgcctcgccgccaagg 13272
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>gb|AC011293.5|AC011293 Homo sapiens BAC clone RP11-75F5 from Y, complete sequence
          Length = 159722

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    tcgtgtccactccattccag 67
             ||||||||||||||||||||
Sbjct: 19376 tcgtgtccactccattccag 19357
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    cgagcgcctgcacggcggcg 224
              ||||||||||||||||||||
Sbjct: 211182 cgagcgcctgcacggcggcg 211163
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>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0523A04
          Length = 149049

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     tccagggccacatcaacccc 82
              ||||||||||||||||||||
Sbjct: 120000 tccagggccacatcaacccc 120019
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>dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0418E08
          Length = 141040

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    ttccagggccacatcaaccc 81
             ||||||||||||||||||||
Sbjct: 49215 ttccagggccacatcaaccc 49234
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>gb|BT021893.1| Bos taurus hook homolog 2 (Drosophila) (HOOK2), mRNA, complete cds
          Length = 2739

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 378  cgtgggcgctccgcgtggctggcg 401
            |||| |||||||||||||||||||
Sbjct: 1136 cgtgtgcgctccgcgtggctggcg 1113
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>ref|XM_312094.2| Anopheles gambiae str. PEST ENSANGP00000016751
           (ENSANGG00000014262), partial mRNA
          Length = 670

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 ccggtgacgtgcgtcgtgac 363
           ||||||||||||||||||||
Sbjct: 287 ccggtgacgtgcgtcgtgac 306
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>dbj|AK107239.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F03, full
           insert sequence
          Length = 1618

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 62  ttccagggccacatcaaccc 81
           ||||||||||||||||||||
Sbjct: 128 ttccagggccacatcaaccc 147
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 208     gcgcctgcacggcggcgggc 227
               ||||||||||||||||||||
Sbjct: 1923155 gcgcctgcacggcggcgggc 1923174
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>emb|AL671011.9| Mouse DNA sequence from clone RP23-95O23 on chromosome 4, complete
              sequence
          Length = 226950

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     gacaatgacgacgacccctg 29
              ||||||||||||||||||||
Sbjct: 121634 gacaatgacgacgacccctg 121615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,446,195
Number of Sequences: 3902068
Number of extensions: 2446195
Number of successful extensions: 61054
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59004
Number of HSP's gapped (non-prelim): 2045
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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