ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet99a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YR660_MIMIV (Q5UR15) Hypothetical protein R660 28 8.2
2THG2_WHEAT (P20159) Gamma-2 purothionin 28 8.2

>YR660_MIMIV (Q5UR15) Hypothetical protein R660|
          Length = 206

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 13  TFHGQNHTF*NHHRS*QLAVQYTGSNSHSGENGGK 117
           ++HG NH +  HH        Y G N ++G N GK
Sbjct: 44  SYHGYNHNYEYHH--------YHGYNHYNGYNYGK 70



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>THG2_WHEAT (P20159) Gamma-2 purothionin|
          Length = 47

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 118 PCRHSRRCGCYCLCTALLAATIDGGFRRCGFVR 20
           PC   + C   CL         DG FRRC  +R
Sbjct: 13  PCVSDKNCAQVCLQEGWGGGNCDGPFRRCKCIR 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,986,673
Number of Sequences: 219361
Number of extensions: 239697
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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