ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet99a10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473863.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 465 Score = 190 bits (96), Expect = 2e-45 Identities = 123/132 (93%) Strand = Plus / Plus Query: 162 gctgaagctggtggcgtgcgtggacgcgctcaacggggtggtgcacgcggtggtgggcgc 221 |||||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||| Sbjct: 222 gctgaagctgctggcgtgcgtggacgcgctgaacgggctggtgcacgcggtggtcggcgc 281 Query: 222 caacgccagcgagacctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgct 281 ||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 282 caaggccagcgacacctgctgcccgctgctgtccggcgtcgccgacctcgacgccgcgct 341 Query: 282 ctgcctttgcac 293 |||||| ||||| Sbjct: 342 ctgcctctgcac 353
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 190 bits (96), Expect = 2e-45 Identities = 123/132 (93%) Strand = Plus / Plus Query: 162 gctgaagctggtggcgtgcgtggacgcgctcaacggggtggtgcacgcggtggtgggcgc 221 |||||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||| Sbjct: 77953 gctgaagctgctggcgtgcgtggacgcgctgaacgggctggtgcacgcggtggtcggcgc 78012 Query: 222 caacgccagcgagacctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgct 281 ||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 78013 caaggccagcgacacctgctgcccgctgctgtccggcgtcgccgacctcgacgccgcgct 78072 Query: 282 ctgcctttgcac 293 |||||| ||||| Sbjct: 78073 ctgcctctgcac 78084 Score = 188 bits (95), Expect = 7e-45 Identities = 134/147 (91%) Strand = Plus / Plus Query: 147 gtgccccgtggacgtgctgaagctggtggcgtgcgtggacgcgctcaacggggtggtgca 206 |||||| |||||| |||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct: 67519 gtgcccggtggacacgctgaagctgctggcgtgcgtggacgcgctgaacgggctggtgca 67578 Query: 207 cgcggtggtgggcgccaacgccagcgagacctgctgcccgctgctgtccggcgtggccga 266 ||||||||| ||||||| |||| |||| |||||||||||||||||||||||||| ||||| Sbjct: 67579 cgcggtggtcggcgccaccgccggcgacacctgctgcccgctgctgtccggcgtcgccga 67638 Query: 267 ccccgacgccgcgctctgcctttgcac 293 || |||||||||||||||||| ||||| Sbjct: 67639 cctcgacgccgcgctctgcctctgcac 67665
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 190 bits (96), Expect = 2e-45 Identities = 123/132 (93%) Strand = Plus / Plus Query: 162 gctgaagctggtggcgtgcgtggacgcgctcaacggggtggtgcacgcggtggtgggcgc 221 |||||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||| Sbjct: 31095872 gctgaagctgctggcgtgcgtggacgcgctgaacgggctggtgcacgcggtggtcggcgc 31095931 Query: 222 caacgccagcgagacctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgct 281 ||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct: 31095932 caaggccagcgacacctgctgcccgctgctgtccggcgtcgccgacctcgacgccgcgct 31095991 Query: 282 ctgcctttgcac 293 |||||| ||||| Sbjct: 31095992 ctgcctctgcac 31096003 Score = 188 bits (95), Expect = 7e-45 Identities = 134/147 (91%) Strand = Plus / Plus Query: 147 gtgccccgtggacgtgctgaagctggtggcgtgcgtggacgcgctcaacggggtggtgca 206 |||||| |||||| |||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct: 31085438 gtgcccggtggacacgctgaagctgctggcgtgcgtggacgcgctgaacgggctggtgca 31085497 Query: 207 cgcggtggtgggcgccaacgccagcgagacctgctgcccgctgctgtccggcgtggccga 266 ||||||||| ||||||| |||| |||| |||||||||||||||||||||||||| ||||| Sbjct: 31085498 cgcggtggtcggcgccaccgccggcgacacctgctgcccgctgctgtccggcgtcgccga 31085557 Query: 267 ccccgacgccgcgctctgcctttgcac 293 || |||||||||||||||||| ||||| Sbjct: 31085558 cctcgacgccgcgctctgcctctgcac 31085584 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 gctggtggcgctgctctccgtgct 128 |||||||||||||||| ||||||| Sbjct: 559837 gctggtggcgctgctcgccgtgct 559814
>ref|XM_473862.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 188 bits (95), Expect = 7e-45 Identities = 134/147 (91%) Strand = Plus / Plus Query: 147 gtgccccgtggacgtgctgaagctggtggcgtgcgtggacgcgctcaacggggtggtgca 206 |||||| |||||| |||||||||| ||||||||||||||||||| |||||| ||||||| Sbjct: 333 gtgcccggtggacacgctgaagctgctggcgtgcgtggacgcgctgaacgggctggtgca 392 Query: 207 cgcggtggtgggcgccaacgccagcgagacctgctgcccgctgctgtccggcgtggccga 266 ||||||||| ||||||| |||| |||| |||||||||||||||||||||||||| ||||| Sbjct: 393 cgcggtggtcggcgccaccgccggcgacacctgctgcccgctgctgtccggcgtcgccga 452 Query: 267 ccccgacgccgcgctctgcctttgcac 293 || |||||||||||||||||| ||||| Sbjct: 453 cctcgacgccgcgctctgcctctgcac 479
>dbj|AK062295.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F05, full insert sequence Length = 570 Score = 184 bits (93), Expect = 1e-43 Identities = 120/129 (93%) Strand = Plus / Plus Query: 165 gaagctggtggcgtgcgtggacgcgctcaacggggtggtgcacgcggtggtgggcgccaa 224 ||||||| ||||||||||||||||||| |||||| |||||||||||||||| |||||||| Sbjct: 1 gaagctgctggcgtgcgtggacgcgctgaacgggctggtgcacgcggtggtcggcgccaa 60 Query: 225 cgccagcgagacctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctg 284 |||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct: 61 ggccagcgacacctgctgcccgctgctgtccggcgtcgccgacctcgacgccgcgctctg 120 Query: 285 cctttgcac 293 ||| ||||| Sbjct: 121 cctctgcac 129
>gb|U73214.1|TAU73214 Triticum aestivum cold acclimation protein WCOR518 (Wcor518) mRNA, parial cds Length = 1168 Score = 119 bits (60), Expect = 5e-24 Identities = 114/132 (86%) Strand = Plus / Plus Query: 162 gctgaagctggtggcgtgcgtggacgcgctcaacggggtggtgcacgcggtggtgggcgc 221 |||||| ||| ||| ||||||||||| |||||||||| |||||||||||||| | ||| Sbjct: 706 gctgaaactgttggggtgcgtggacgggctcaacgggctggtgcacgcggtgatcggcag 765 Query: 222 caacgccagcgagacctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgct 281 || ||| ||||| | ||||||||||||| | ||||||||||| |||| |||||||||||| Sbjct: 766 cagcgctagcgacagctgctgcccgctgttatccggcgtggctgacctcgacgccgcgct 825 Query: 282 ctgcctttgcac 293 |||||| ||||| Sbjct: 826 ctgcctctgcac 837 Score = 85.7 bits (43), Expect = 7e-14 Identities = 109/131 (83%) Strand = Plus / Plus Query: 163 ctgaagctggtggcgtgcgtggacgcgctcaacggggtggtgcacgcggtggtgggcgcc 222 ||||||||| ||| ||||||||| || ||||||||| | |||||||||||| | ||| | Sbjct: 266 ctgaagctgctggggtgcgtggatgccctcaacgggcttgtgcacgcggtgatcggcagc 325 Query: 223 aacgccagcgagacctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctc 282 | ||||||||| | |||||||| || ||||||||||| ||| || |||||| |||||| Sbjct: 326 agcgccagcgataagtgctgccctttgttgtccggcgtgaccggcctcgacgcagcgctc 385 Query: 283 tgcctttgcac 293 ||||| ||||| Sbjct: 386 tgcctatgcac 396
>dbj|AK062781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B03, full insert sequence Length = 713 Score = 91.7 bits (46), Expect = 1e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 236 cctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| Sbjct: 156 cctgctgcccgctgctgtccggcgtcgccgacctcgacgccgcgctctgcctctgcac 213
>ref|NM_190601.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1143 Score = 71.9 bits (36), Expect = 1e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 193 aacggggtggtgcacgcggtggtgggcgccaacgccagcgagacctgctgcccgctgctg 252 |||||| |||||||| |||| || ||| |||| |||||||| || ||||||||||||||| Sbjct: 7 aacgggctggtgcacacggtagtcggcaccaaggccagcgacacatgctgcccgctgctg 66 Query: 253 tccggcgt 260 |||||||| Sbjct: 67 tccggcgt 74
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 71.9 bits (36), Expect = 1e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 193 aacggggtggtgcacgcggtggtgggcgccaacgccagcgagacctgctgcccgctgctg 252 |||||| |||||||| |||| || ||| |||| |||||||| || ||||||||||||||| Sbjct: 36416726 aacgggctggtgcacacggtagtcggcaccaaggccagcgacacatgctgcccgctgctg 36416667 Query: 253 tccggcgt 260 |||||||| Sbjct: 36416666 tccggcgt 36416659 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 cgctcgtgctggtggcgctgc 118 ||||||||||||||||||||| Sbjct: 10933775 cgctcgtgctggtggcgctgc 10933755 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ctcgtgctggtggcgctgct 119 |||||||||||||||||||| Sbjct: 8521941 ctcgtgctggtggcgctgct 8521960 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ggccgaccccgacgccgcgc 280 |||||||||||||||||||| Sbjct: 1575278 ggccgaccccgacgccgcgc 1575259
>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0005H10 Length = 142885 Score = 71.9 bits (36), Expect = 1e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 193 aacggggtggtgcacgcggtggtgggcgccaacgccagcgagacctgctgcccgctgctg 252 |||||| |||||||| |||| || ||| |||| |||||||| || ||||||||||||||| Sbjct: 68565 aacgggctggtgcacacggtagtcggcaccaaggccagcgacacatgctgcccgctgctg 68506 Query: 253 tccggcgt 260 |||||||| Sbjct: 68505 tccggcgt 68498
>ref|NM_197672.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.15), mRNA Length = 429 Score = 65.9 bits (33), Expect = 7e-08 Identities = 51/57 (89%) Strand = Plus / Plus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||||||||||||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 264 ctgctgcccgctgctgtccggcctagccgacctcgacgccgccgtctgcctctgcac 320
>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete sequence Length = 144798 Score = 65.9 bits (33), Expect = 7e-08 Identities = 51/57 (89%) Strand = Plus / Plus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||||||||||||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 62001 ctgctgcccgctgctgtccggcctagccgacctcgacgccgccgtctgcctctgcac 62057 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Plus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| ||||| | |||||| |||||||||| ||||||| ||||| Sbjct: 66371 ctgctgcccgctgctcgccggcctcgccgacgccgacgccgccgtctgcctctgcac 66427 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Plus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| ||||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 49847 ctgctgcccgctgctctccgggctcgccgacctcgacgccgccgtctgcctctgcac 49903
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 65.9 bits (33), Expect = 7e-08 Identities = 51/57 (89%) Strand = Plus / Minus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||||||||||||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 21143705 ctgctgcccgctgctgtccggcctagccgacctcgacgccgccgtctgcctctgcac 21143649 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Minus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| ||||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 21155859 ctgctgcccgctgctctccgggctcgccgacctcgacgccgccgtctgcctctgcac 21155803 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Minus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| ||||| | |||||| |||||||||| ||||||| ||||| Sbjct: 21139335 ctgctgcccgctgctcgccggcctcgccgacgccgacgccgccgtctgcctctgcac 21139279 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Minus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| |||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 10072390 tgctgcccgctgctggccggtatcgccgacctcgacgccgccgtctgcctctgcac 10072335 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 ccggcgtggccgaccccgacgccgc 278 |||||||||||||| |||||||||| Sbjct: 18465706 ccggcgtggccgacgccgacgccgc 18465682
>dbj|AK102086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082M21, full insert sequence Length = 769 Score = 65.9 bits (33), Expect = 7e-08 Identities = 51/57 (89%) Strand = Plus / Plus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||||||||||||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 343 ctgctgcccgctgctgtccggcctagccgacctcgacgccgccgtctgcctctgcac 399
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 65.9 bits (33), Expect = 7e-08 Identities = 51/57 (89%) Strand = Plus / Minus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||||||||||||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 21154969 ctgctgcccgctgctgtccggcctagccgacctcgacgccgccgtctgcctctgcac 21154913 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Minus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| ||||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 21167123 ctgctgcccgctgctctccgggctcgccgacctcgacgccgccgtctgcctctgcac 21167067 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Minus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| ||||| | |||||| |||||||||| ||||||| ||||| Sbjct: 21150599 ctgctgcccgctgctcgccggcctcgccgacgccgacgccgccgtctgcctctgcac 21150543 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Minus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| |||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 10078429 tgctgcccgctgctggccggtatcgccgacctcgacgccgccgtctgcctctgcac 10078374 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 ccggcgtggccgaccccgacgccgc 278 |||||||||||||| |||||||||| Sbjct: 18475759 ccggcgtggccgacgccgacgccgc 18475735
>ref|NM_197676.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.11), mRNA Length = 411 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Plus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| ||||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 249 ctgctgcccgctgctctccgggctcgccgacctcgacgccgccgtctgcctctgcac 305
>ref|NM_197671.1| Oryza sativa (japonica cultivar-group) putative lipid transfer protein (OSJNBa0015J15.16), mRNA Length = 441 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Plus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| ||||| | |||||| |||||||||| ||||||| ||||| Sbjct: 279 ctgctgcccgctgctcgccggcctcgccgacgccgacgccgccgtctgcctctgcac 335
>gb|L27210.1|RICRCG2 Oryza sativa root-specific protein (RCg2) gene, complete cds Length = 2252 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Plus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| ||||| | |||||| |||||||||| ||||||| ||||| Sbjct: 1935 ctgctgcccgctgctcgccggcctcgccgacgccgacgccgccgtctgcctctgcac 1991
>gb|L27209.1|RICRCC2 Oryza sativa root-specific RCc2 mRNA, complete cds Length = 654 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Plus Query: 237 ctgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| ||||| | |||||| |||||||||| ||||||| ||||| Sbjct: 323 ctgctgcccgctgctcgccggcctcgccgacgccgacgccgccgtctgcctctgcac 379
>ref|XM_550375.1| Oryza sativa (japonica cultivar-group), mRNA Length = 992 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Plus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||| || |||||||| |||| ||||||||||||||||| ||||| Sbjct: 599 tgctgcccgctggtgcagggcgtggcggacctggacgccgcgctctgcctctgcac 654
>ref|NM_195931.1| Oryza sativa (japonica cultivar-group) putative lipid tranfer protein (OSJNAb0078C13.15), mRNA Length = 381 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Plus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| |||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 217 tgctgcccgctgctggccggtatcgccgacctcgacgccgccgtctgcctctgcac 272
>gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0078C13, complete sequence Length = 146538 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Minus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| |||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 89149 tgctgcccgctgctggccggtatcgccgacctcgacgccgccgtctgcctctgcac 89094
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Minus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||| || |||||||| |||| ||||||||||||||||| ||||| Sbjct: 3455206 tgctgcccgctggtgcagggcgtggcggacctggacgccgcgctctgcctctgcac 3455151 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgtggccgaccccgacgccg 277 |||||||||||||||||||| Sbjct: 5201916 cgtggccgaccccgacgccg 5201897
>dbj|AP002864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0033B09 Length = 143545 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Minus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||| || |||||||| |||| ||||||||||||||||| ||||| Sbjct: 71910 tgctgcccgctggtgcagggcgtggcggacctggacgccgcgctctgcctctgcac 71855
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone P0680A03 Length = 156054 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Minus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||| || |||||||| |||| ||||||||||||||||| ||||| Sbjct: 146760 tgctgcccgctggtgcagggcgtggcggacctggacgccgcgctctgcctctgcac 146705
>dbj|AK103637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033134F12, full insert sequence Length = 1013 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Plus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||| || |||||||| |||| ||||||||||||||||| ||||| Sbjct: 599 tgctgcccgctggtgcagggcgtggcggacctggacgccgcgctctgcctctgcac 654
>dbj|AK101305.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033M04, full insert sequence Length = 992 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Plus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||| || |||||||| |||| ||||||||||||||||| ||||| Sbjct: 599 tgctgcccgctggtgcagggcgtggcggacctggacgccgcgctctgcctctgcac 654
>dbj|AK062848.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-H12, full insert sequence Length = 662 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Plus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 ||||||||||||||| |||| | ||||||| ||||||||| ||||||| ||||| Sbjct: 279 tgctgcccgctgctggccggtatcgccgacctcgacgccgccgtctgcctctgcac 334
>dbj|AK059170.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-E12, full insert sequence Length = 1384 Score = 48.1 bits (24), Expect = 0.016 Identities = 48/56 (85%) Strand = Plus / Plus Query: 238 tgctgcccgctgctgtccggcgtggccgaccccgacgccgcgctctgcctttgcac 293 |||||||||||| || |||||||| |||| ||||||||||||||||| ||||| Sbjct: 1016 tgctgcccgctggtgcagggcgtggcggacctggacgccgcgctctgcctctgcac 1071
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 gtgggcgccaacgccagcgagac 236 ||||||||||||||||||||||| Sbjct: 1252757 gtgggcgccaacgccagcgagac 1252735 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gctggtggcgctgctctccg 124 |||||||||||||||||||| Sbjct: 85477 gctggtggcgctgctctccg 85496
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 102 cgtgctggtggcgctgctctcc 123 |||||||||||||||||||||| Sbjct: 1643481 cgtgctggtggcgctgctctcc 1643460
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 208 gcggtggtgggcgccaacgccagcga 233 ||||||| |||||||||||||||||| Sbjct: 627562 gcggtggcgggcgccaacgccagcga 627587
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 99 gctcgtgctggtggcgctgctc 120 |||||||||||||||||||||| Sbjct: 13280 gctcgtgctggtggcgctgctc 13301
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 99 gctcgtgctggtggcgctgctc 120 |||||||||||||||||||||| Sbjct: 270060 gctcgtgctggtggcgctgctc 270081
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 99 gctcgtgctggtggcgctgctc 120 |||||||||||||||||||||| Sbjct: 203717 gctcgtgctggtggcgctgctc 203738
>ref|NM_197179.1| Oryza sativa (japonica cultivar-group) putative prolyl 4-hydroxylase, alpha subunit (OSJNBa0017E08.15), mRNA Length = 1032 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 ccggcgtggccgaccccgacgccgc 278 |||||||||||||| |||||||||| Sbjct: 233 ccggcgtggccgacgccgacgccgc 209
>ref|NM_183669.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 882 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 cgctcgtgctggtggcgctgc 118 ||||||||||||||||||||| Sbjct: 712 cgctcgtgctggtggcgctgc 692
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 gctggccgcgccgtcgtcggc 146 ||||||||||||||||||||| Sbjct: 15015 gctggccgcgccgtcgtcggc 15035
>gb|AY459337.1| Oryza sativa (japonica cultivar-group) clone CL003615.3 R2R3-MYB gene region Length = 42296 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 cgctcgtgctggtggcgctgc 118 ||||||||||||||||||||| Sbjct: 8578 cgctcgtgctggtggcgctgc 8598
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 96 gccgctcgtgctggtggcgctgctc 120 |||| |||||||||||||||||||| Sbjct: 3685255 gccgttcgtgctggtggcgctgctc 3685231
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 121 tccgtgctggccgcgccgtcgtcgg 145 ||||||| ||||||||||||||||| Sbjct: 269375 tccgtgcgggccgcgccgtcgtcgg 269399
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 ccggcgtggccgaccccgacgccgc 278 |||||||||||||| |||||||||| Sbjct: 40987 ccggcgtggccgacgccgacgccgc 41011
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13 Length = 133242 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 cgctcgtgctggtggcgctgc 118 ||||||||||||||||||||| Sbjct: 120791 cgctcgtgctggtggcgctgc 120771
>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487H02 Length = 145491 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 cgctcgtgctggtggcgctgc 118 ||||||||||||||||||||| Sbjct: 36617 cgctcgtgctggtggcgctgc 36597
>dbj|AK120584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136I05, full insert sequence Length = 1373 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 ccggcgtggccgaccccgacgccgc 278 |||||||||||||| |||||||||| Sbjct: 326 ccggcgtggccgacgccgacgccgc 302
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gcggtggtgggcgccaacgcc 228 ||||||||||||||||||||| Sbjct: 2245380 gcggtggtgggcgccaacgcc 2245360
>gb|AY106116.1| Zea mays PCO091367 mRNA sequence Length = 842 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 148 tgccccgtggacgtgctgaagctgg 172 ||||||||||||| ||||||||||| Sbjct: 317 tgccccgtggacgcgctgaagctgg 341
>gb|AY387687.1| Triticum aestivum harpin binding protein 1 (HrBP1-2) mRNA, complete cds Length = 1205 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tggccgcgccgtcgtcggcg 147 |||||||||||||||||||| Sbjct: 315 tggccgcgccgtcgtcggcg 334
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 164 tgaagctggtggcgtgcgtggacgcgct 191 ||||||||||||| |||||||| ||||| Sbjct: 1282777 tgaagctggtggcctgcgtggaagcgct 1282804
>ref|NM_187907.1| Oryza sativa (japonica cultivar-group), Ozsa8349 predicted mRNA Length = 1365 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ctcgtgctggtggcgctgct 119 |||||||||||||||||||| Sbjct: 1220 ctcgtgctggtggcgctgct 1201
>ref|NM_184213.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2244 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ggccgaccccgacgccgcgc 280 |||||||||||||||||||| Sbjct: 320 ggccgaccccgacgccgcgc 339
>ref|XM_471003.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 981 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 gctggtggcgctgctctccgtgct 128 |||||||||||||||| ||||||| Sbjct: 816 gctggtggcgctgctcgccgtgct 839
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 cgtggccgaccccgacgccgcgct 281 |||||||||| ||||||||||||| Sbjct: 721891 cgtggccgacaccgacgccgcgct 721868
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 gcgccaacgccagcgagacc 237 |||||||||||||||||||| Sbjct: 4267803 gcgccaacgccagcgagacc 4267784
>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06, complete sequence Length = 143730 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 gctggtggcgctgctctccgtgct 128 |||||||||||||||| ||||||| Sbjct: 90804 gctggtggcgctgctcgccgtgct 90781
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 cgtggccgaccccgacgccgcgct 281 |||||||||| ||||||||||||| Sbjct: 777426 cgtggccgacaccgacgccgcgct 777403
>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0711E10 Length = 157903 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ctcgtgctggtggcgctgct 119 |||||||||||||||||||| Sbjct: 97094 ctcgtgctggtggcgctgct 97113
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 ggcgccaacgccagcgagac 236 |||||||||||||||||||| Sbjct: 97921 ggcgccaacgccagcgagac 97902
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 ggcccgcattgcgccgctcg 103 |||||||||||||||||||| Sbjct: 3759552 ggcccgcattgcgccgctcg 3759533
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 ccggcgtggccgaccccgacgccg 277 ||||||||||||||||| |||||| Sbjct: 3091501 ccggcgtggccgacccctacgccg 3091524
>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0705D01 Length = 147174 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ctcgtgctggtggcgctgct 119 |||||||||||||||||||| Sbjct: 136896 ctcgtgctggtggcgctgct 136915
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ccgaccccgacgccgcgctc 282 |||||||||||||||||||| Sbjct: 4634235 ccgaccccgacgccgcgctc 4634254 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 gccgaccccgacgccgcgct 281 |||||||||||||||||||| Sbjct: 2022087 gccgaccccgacgccgcgct 2022106
>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408F06 Length = 137462 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ggccgaccccgacgccgcgc 280 |||||||||||||||||||| Sbjct: 12509 ggccgaccccgacgccgcgc 12490
>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016O19 Length = 169120 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cgtggccgaccccgacgccg 277 |||||||||||||||||||| Sbjct: 68638 cgtggccgaccccgacgccg 68619
>dbj|AK121214.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089M05, full insert sequence Length = 2247 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ggccgaccccgacgccgcgc 280 |||||||||||||||||||| Sbjct: 321 ggccgaccccgacgccgcgc 340
>emb|AJ249181.1|ECH249181 Erwinia chrysanthemi sotB gene for sugar efflux transpoter Length = 2161 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gcgccgctcgtgctggtggcgctg 117 |||||||| ||||||||||||||| Sbjct: 1713 gcgccgctggtgctggtggcgctg 1736
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 cgtggccgaccccgacgccgcgct 281 |||||||||| ||||||||||||| Sbjct: 5170607 cgtggccgacaccgacgccgcgct 5170630
>dbj|AK061191.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-F07, full insert sequence Length = 1346 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 gctggtggcgctgctctccgtgct 128 |||||||||||||||| ||||||| Sbjct: 891 gctggtggcgctgctcgccgtgct 914
>emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0201G08, complete sequence Length = 121821 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 gctggtggcgctgctctccgtgct 128 |||||||||||||||| ||||||| Sbjct: 35205 gctggtggcgctgctcgccgtgct 35182
>gb|DQ013364.1| Rhodotorula glutinis phenylalanine ammonia lyase (PAL) mRNA, partial cds Length = 2188 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggccgcgccgtcgtcggcgt 148 |||||||||||||||||||| Sbjct: 1748 ggccgcgccgtcgtcggcgt 1767
>dbj|AB061860.1| Streptomyces griseus orf1, orf2, orf3, dasR, dasA, dasB, dasC, orf8 genes, partial and complete cds Length = 8741 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gctgctgtccggcgtggccg 265 |||||||||||||||||||| Sbjct: 6570 gctgctgtccggcgtggccg 6589 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,747,798 Number of Sequences: 3902068 Number of extensions: 1747798 Number of successful extensions: 42088 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40185 Number of HSP's gapped (non-prelim): 1903 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
