>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCI type III CAB-8)
          Length = 273

 Score = 70.9 bits (172), Expect = 8e-13
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +1

Query: 175 FVVRASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFG 291
           FVVRA+S+PP KQ  NRQLWFASKQSL+YLDG LPGDFG
Sbjct: 37  FVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFG 75

>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCI type II CAB-7)
          Length = 270

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 184 RASSSPPAKQNDNRQLWFASKQSLTYLDGTLPGDFG 291
           R++++     + +R LWF       +LDG+LPGDFG
Sbjct: 52  RSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFG 87

>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCI type II CAB)
          Length = 270

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 220 NRQLWFASKQSLTYLDGTLPGDFG 291
           +R LWF       +LDG+LPGDFG
Sbjct: 64  DRPLWFPGSTPPEWLDGSLPGDFG 87

>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast|
           precursor (LHCII protein 4.2) (LHCB4.2)
          Length = 287

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 220 NRQLWFASKQSLTYLDGTLPGDFG 291
           +R LWF   +S  YLDG+L GD+G
Sbjct: 51  DRPLWFPGAKSPEYLDGSLVGDYG 74

>MOD5_HUMAN (Q9H3H1) tRNA isopentenyltransferase, mitochondrial precursor (EC|
           2.5.1.8) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPP transferase) (IPTase)
           (IPPT) (hGRO1)
          Length = 467

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 291 AKVTRQRAVEVGEGLLGREPQLPVVILLG-RGAGR 190
           A V   RAV VG GL G +  LP+V++LG  G G+
Sbjct: 2   ASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGK 36

>SYE1_WOLPM (Q73HV5) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate--tRNA|
           ligase 1) (GluRS 1)
          Length = 473

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 194 DDALTTKGDFREEDDLEKEDCRGLPSSCLPERRPW 90
           D+    K   REE  + K  C   P SC P  R W
Sbjct: 104 DEVAEKKAKAREEGKIYKHKCTTKPPSCHPSSRHW 138

>OMPY_CHLPN (Q9Z6M5) Putative outer membrane protein|
           CPn_1034/CP0818/CPj1034/CpB1074 precursor
          Length = 262

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 218 SFCLAGGLDDALTTKGDFREEDDLEKEDCRGLPSSCLPERRPWAAIVP 75
           +F L   LDD L   G+       + +  +GL     PE+  W A+VP
Sbjct: 41  NFWLILDLDDTLLQGGEALSHSIWKSKAIQGLQKQGTPEQEAWEAVVP 88

>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor|
           (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa
           protein)
          Length = 246

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 232 WFASKQSLTYLDGTLPGDFG 291
           W   +   +YLDG+ PGDFG
Sbjct: 49  WMPGQPRPSYLDGSAPGDFG 68

>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast|
           precursor (LHCII protein 4.1) (LHCB4.1)
          Length = 290

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 220 NRQLWFASKQSLTYLDGTLPGDFG 291
           +R LW+    S  +LDG+L GD+G
Sbjct: 54  DRPLWYPGAISPDWLDGSLVGDYG 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.127    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,301,746
Number of Sequences: 219361
Number of extensions: 421367
Number of successful extensions: 894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)