ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet98h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1I17RD_BRARE (Q8QHJ9) Interleukin-17 receptor D precursor (IL-17 ... 27 9.6
2REGB_PSEAE (Q03381) Protein regB 27 9.6
3GALT2_HUMAN (Q10471) Polypeptide N-acetylgalactosaminyltransfera... 27 9.6

>I17RD_BRARE (Q8QHJ9) Interleukin-17 receptor D precursor (IL-17 receptor D)|
           (IL-17RD) (Interleukin-17D receptor) (IL-17D receptor)
           (Similar expression to FGF genes protein) (Sef)
          Length = 745

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 166 FAPGVTAQTGSCDDALPPELVGNYSGLACSPVWNNFVLRYAQGGDNV 306
           F P    +T SC+  L P+       L C P W   +L  +Q G N+
Sbjct: 173 FFPPSFLRTNSCEVLLGPD------NLVCKPFWKPKMLNVSQLGSNL 213



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>REGB_PSEAE (Q03381) Protein regB|
          Length = 75

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 230 ATTPGWPAAPSGIT 271
           A TPGWPA P G T
Sbjct: 5   AVTPGWPAIPPGAT 18



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>GALT2_HUMAN (Q10471) Polypeptide N-acetylgalactosaminyltransferase 2 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           2) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 2) (Polypeptide GalNAc
           transferase 2) (GalNAc-T2) (pp-GaNTase 2)
          Length = 571

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 309 QHVVPALRVPEHEVIPDGAAGQPGVVADELG 217
           ++V P LRVP+H+ I  GA  Q     D LG
Sbjct: 431 ENVYPELRVPDHQDIAFGALQQGTNCLDTLG 461


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,534,790
Number of Sequences: 219361
Number of extensions: 485134
Number of successful extensions: 1984
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1981
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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