ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet98h08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192048.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 184 bits (93), Expect = 1e-43 Identities = 141/157 (89%) Strand = Plus / Plus Query: 180 gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239 |||||||||||| ||||||||||||||||||||| || | ||||| |||||||||||| Sbjct: 72 gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 131 Query: 240 cgggctggcctgcagccccgtctggaataacttcgtgctccggtacgcgcagggcgggga 299 ||||||||||||| |||| |||||||| |||||||| ||||||||||||||||| ||| Sbjct: 132 cgggctggcctgccgcccggtctggaacaacttcgtcctccggtacgcgcaggggaagga 191 Query: 300 caacgtgctgcgggtggtgctctcggcgatgtacagc 336 ||||||||||||||||||| ||||| ||||||||||| Sbjct: 192 caacgtgctgcgggtggtgatctcgtcgatgtacagc 228
>dbj|AK069379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015H09, full insert sequence Length = 1419 Score = 184 bits (93), Expect = 1e-43 Identities = 141/157 (89%) Strand = Plus / Plus Query: 180 gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239 |||||||||||| ||||||||||||||||||||| || | ||||| |||||||||||| Sbjct: 171 gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 230 Query: 240 cgggctggcctgcagccccgtctggaataacttcgtgctccggtacgcgcagggcgggga 299 ||||||||||||| |||| |||||||| |||||||| ||||||||||||||||| ||| Sbjct: 231 cgggctggcctgccgcccggtctggaacaacttcgtcctccggtacgcgcaggggaagga 290 Query: 300 caacgtgctgcgggtggtgctctcggcgatgtacagc 336 ||||||||||||||||||| ||||| ||||||||||| Sbjct: 291 caacgtgctgcgggtggtgatctcgtcgatgtacagc 327
>dbj|AK060690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C01, full insert sequence Length = 1594 Score = 184 bits (93), Expect = 1e-43 Identities = 141/157 (89%) Strand = Plus / Plus Query: 180 gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239 |||||||||||| ||||||||||||||||||||| || | ||||| |||||||||||| Sbjct: 281 gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 340 Query: 240 cgggctggcctgcagccccgtctggaataacttcgtgctccggtacgcgcagggcgggga 299 ||||||||||||| |||| |||||||| |||||||| ||||||||||||||||| ||| Sbjct: 341 cgggctggcctgccgcccggtctggaacaacttcgtcctccggtacgcgcaggggaagga 400 Query: 300 caacgtgctgcgggtggtgctctcggcgatgtacagc 336 ||||||||||||||||||| ||||| ||||||||||| Sbjct: 401 caacgtgctgcgggtggtgatctcgtcgatgtacagc 437
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 117 bits (59), Expect = 2e-23 Identities = 92/103 (89%) Strand = Plus / Minus Query: 180 gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239 |||||||||||| ||||||||||||||||||||| || | ||||| |||||||||||| Sbjct: 28024665 gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 28024606 Query: 240 cgggctggcctgcagccccgtctggaataacttcgtgctccgg 282 ||||||||||||| |||| |||||||| |||||||| |||||| Sbjct: 28024605 cgggctggcctgccgcccggtctggaacaacttcgtcctccgg 28024563 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 282 gtacgcgcagggcggggacaacgtgctgcgggtggtgctctcggcgatgtacagc 336 |||||||||||| |||||||||||||||||||||| ||||| ||||||||||| Sbjct: 28024464 gtacgcgcaggggaaggacaacgtgctgcgggtggtgatctcgtcgatgtacagc 28024410
>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0019E03 Length = 152092 Score = 117 bits (59), Expect = 2e-23 Identities = 92/103 (89%) Strand = Plus / Minus Query: 180 gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239 |||||||||||| ||||||||||||||||||||| || | ||||| |||||||||||| Sbjct: 39864 gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 39805 Query: 240 cgggctggcctgcagccccgtctggaataacttcgtgctccgg 282 ||||||||||||| |||| |||||||| |||||||| |||||| Sbjct: 39804 cgggctggcctgccgcccggtctggaacaacttcgtcctccgg 39762 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 282 gtacgcgcagggcggggacaacgtgctgcgggtggtgctctcggcgatgtacagc 336 |||||||||||| |||||||||||||||||||||| ||||| ||||||||||| Sbjct: 39663 gtacgcgcaggggaaggacaacgtgctgcgggtggtgatctcgtcgatgtacagc 39609
>dbj|AK119489.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-C11, full insert sequence Length = 1309 Score = 117 bits (59), Expect = 2e-23 Identities = 92/103 (89%) Strand = Plus / Minus Query: 180 gacggcgcagaccggcagctgcgacgacgcgctgccgcccgagctcgtcggcaactactc 239 |||||||||||| ||||||||||||||||||||| || | ||||| |||||||||||| Sbjct: 684 gacggcgcagacatccagctgcgacgacgcgctgcccccggcgctcgccggcaactactc 625 Query: 240 cgggctggcctgcagccccgtctggaataacttcgtgctccgg 282 ||||||||||||| |||| |||||||| |||||||| |||||| Sbjct: 624 cgggctggcctgccgcccggtctggaacaacttcgtcctccgg 582 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 282 gtacgcgcagggcggggacaacgtgctgcgggtggtgctctcggcgatgtacagc 336 |||||||||||| |||||||||||||||||||||| ||||| ||||||||||| Sbjct: 483 gtacgcgcaggggaaggacaacgtgctgcgggtggtgatctcgtcgatgtacagc 429
>ref|XM_475892.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1110 Score = 54.0 bits (27), Expect = 3e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 222 gctcgtcggcaactactccgggctggcctgcagccccgtctggaataacttcgtgctccg 281 ||||||||||||||||||||| ||| ||| || |||||||| || ||||||||||| Sbjct: 99 gctcgtcggcaactactccggcctgaattgccagccggtctggaacaatttcgtgctccg 158 Query: 282 gtacgcgcagggcggggacaacgtgctgcgggtggtgctctcggcgatgtacagc 336 ||| || | | | ||||||||||| |||||||||| ||| ||||||||||| Sbjct: 159 gtatcaccaagacaagaacaacgtgctgagggtggtgctgtcgacgatgtacagc 213
>dbj|AK058980.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D11, full insert sequence Length = 1462 Score = 54.0 bits (27), Expect = 3e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 222 gctcgtcggcaactactccgggctggcctgcagccccgtctggaataacttcgtgctccg 281 ||||||||||||||||||||| ||| ||| || |||||||| || ||||||||||| Sbjct: 238 gctcgtcggcaactactccggcctgaattgccagccggtctggaacaatttcgtgctccg 297 Query: 282 gtacgcgcagggcggggacaacgtgctgcgggtggtgctctcggcgatgtacagc 336 ||| || | | | ||||||||||| |||||||||| ||| ||||||||||| Sbjct: 298 gtatcaccaagacaagaacaacgtgctgagggtggtgctgtcgacgatgtacagc 352
>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03, complete sequence Length = 144601 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 299 acaacgtgctgcgggtggtgctctcggcgatgtacagc 336 ||||||||||| |||||||||| ||| ||||||||||| Sbjct: 42882 acaacgtgctgagggtggtgctgtcgacgatgtacagc 42919 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 gctcgtcggcaactactccgg 242 ||||||||||||||||||||| Sbjct: 42366 gctcgtcggcaactactccgg 42386
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 299 acaacgtgctgcgggtggtgctctcggcgatgtacagc 336 ||||||||||| |||||||||| ||| ||||||||||| Sbjct: 27446752 acaacgtgctgagggtggtgctgtcgacgatgtacagc 27446789 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 gctcgtcggcaactactccgg 242 ||||||||||||||||||||| Sbjct: 27446236 gctcgtcggcaactactccgg 27446256 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tcgtcgtcgcgctcgccgcc 153 |||||||||||||||||||| Sbjct: 14815175 tcgtcgtcgcgctcgccgcc 14815194
>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence Length = 184457 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Plus Query: 123 cgccgcgatgctcgtcgtcgcgctcgc 149 |||||||||||||| |||||||||||| Sbjct: 96347 cgccgcgatgctcgccgtcgcgctcgc 96373
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Minus Query: 176 gggtgacggcgcagaccggcagc 198 ||||||||||||||||||||||| Sbjct: 4252953 gggtgacggcgcagaccggcagc 4252931
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 gcgacgacgcgctgccgcccg 220 ||||||||||||||||||||| Sbjct: 374369 gcgacgacgcgctgccgcccg 374349 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 125 ccgcgatgctcgtcgtcgcgctcgccgc 152 ||||||||| | |||||||||||||||| Sbjct: 1180640 ccgcgatgcgcctcgtcgcgctcgccgc 1180667
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 119 tcggcgccgcgatgctcgtcgtcgcgctcgccg 151 |||||| ||||||||||| || ||||||||||| Sbjct: 3085331 tcggcggcgcgatgctcggcggcgcgctcgccg 3085363
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 gcgacgacgcgctgccgcccg 220 ||||||||||||||||||||| Sbjct: 1105050 gcgacgacgcgctgccgcccg 1105030 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 125 ccgcgatgctcgtcgtcgcgctcgccgc 152 ||||||||| | |||||||||||||||| Sbjct: 2334980 ccgcgatgcgcctcgtcgcgctcgccgc 2334953
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 119 tcggcgccgcgatgctcgtcgtcgcgctcgccg 151 |||||| ||||||||||| || ||||||||||| Sbjct: 1264153 tcggcggcgcgatgctcggcggcgcgctcgccg 1264185
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 gcgacgacgcgctgccgcccg 220 ||||||||||||||||||||| Sbjct: 986013 gcgacgacgcgctgccgcccg 985993 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 125 ccgcgatgctcgtcgtcgcgctcgccgc 152 ||||||||| | |||||||||||||||| Sbjct: 2049629 ccgcgatgcgcctcgtcgcgctcgccgc 2049656
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 119 tcggcgccgcgatgctcgtcgtcgcgctcgccg 151 |||||| ||||||||||| || ||||||||||| Sbjct: 1371256 tcggcggcgcgatgctcggcggcgcgctcgccg 1371224
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 107 gcgcgtccggcgtcggcgccgcgatgctcgtcgtcgc 143 |||||||| || ||||||| ||||| ||||||||||| Sbjct: 20832840 gcgcgtccagcctcggcgcggcgatcctcgtcgtcgc 20832804
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 tggcgcgcgcgtccggcgtcggcgccgcg 129 ||||||||||| |||||| |||||||||| Sbjct: 338859 tggcgcgcgcggccggcgacggcgccgcg 338831
>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 101075 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 107 gcgcgtccggcgtcggcgccgcgatgctcgtcgtcgc 143 |||||||| || ||||||| ||||| ||||||||||| Sbjct: 34571 gcgcgtccagcctcggcgcggcgatcctcgtcgtcgc 34535
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 123 cgccgcgatgctcgtcgtcgcgctcgccg 151 ||||| |||||||||| |||||||||||| Sbjct: 200762 cgccgtgatgctcgtcttcgcgctcgccg 200734 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ggcgtcggcgccgcgatgct 134 |||||||||||||||||||| Sbjct: 2676560 ggcgtcggcgccgcgatgct 2676579
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 tgctcgtcgtcgcgctcgccg 151 ||||||||||||||||||||| Sbjct: 1577277 tgctcgtcgtcgcgctcgccg 1577257
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 107 gcgcgtccggcgtcggcgccgcgatgctcgtcgtcgc 143 |||||||| || ||||||| ||||| ||||||||||| Sbjct: 20759054 gcgcgtccagcctcggcgcggcgatcctcgtcgtcgc 20759018
>emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa0036E08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 149022 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 107 gcgcgtccggcgtcggcgccgcgatgctcgtcgtcgc 143 |||||||| || ||||||| ||||| ||||||||||| Sbjct: 130681 gcgcgtccagcctcggcgcggcgatcctcgtcgtcgc 130645
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 cgcagggcggggacaacgtgctgc 310 |||||||||||| ||||||||||| Sbjct: 3622197 cgcagggcggggtcaacgtgctgc 3622220
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 124 gccgcgatgctcgtcgtcgcgctc 147 ||||||||||||| |||||||||| Sbjct: 681397 gccgcgatgctcgccgtcgcgctc 681374
>gb|AC136227.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0109A13, complete sequence Length = 134258 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tcgtcgtcgcgctcgccgcc 153 |||||||||||||||||||| Sbjct: 41517 tcgtcgtcgcgctcgccgcc 41536
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22, complete sequence Length = 166052 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tcgtcgtcgcgctcgccgcc 153 |||||||||||||||||||| Sbjct: 150589 tcgtcgtcgcgctcgccgcc 150608
>gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0034E03 map near 50283S, complete sequence Length = 134074 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gacgcgctgccgcccgagct 224 |||||||||||||||||||| Sbjct: 36856 gacgcgctgccgcccgagct 36837
>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22, complete sequence Length = 161172 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 gacgcgctgccgcccgagct 224 |||||||||||||||||||| Sbjct: 13739 gacgcgctgccgcccgagct 13758
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 tcgcgccgggggtgacggcg 186 |||||||||||||||||||| Sbjct: 2230837 tcgcgccgggggtgacggcg 2230856
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 4.5 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 175 ggggtgacggcgcag-accggcagctgc 201 ||||||||||||||| |||||||||||| Sbjct: 576004 ggggtgacggcgcagcaccggcagctgc 575977
>ref|XM_755172.1| Ustilago maydis 521 hypothetical protein (UM04118.1) partial mRNA Length = 1665 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gatgctcgtcgtcgcgctcg 148 |||||||||||||||||||| Sbjct: 157 gatgctcgtcgtcgcgctcg 138
>gb|AY372243.1| Psittacid herpesvirus 1 isolate 97-0001, complete genome Length = 163025 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 cgaggcctttcacggcgtcggtgg 85 |||||||||||||||| ||||||| Sbjct: 85994 cgaggcctttcacggcctcggtgg 85971
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ggcgtcggcgccgcgatgct 134 |||||||||||||||||||| Sbjct: 2051347 ggcgtcggcgccgcgatgct 2051328
>emb|AL593853.11| Mouse DNA sequence from clone RP23-199A2 on chromosome 11 Contains the 5' end of a novel gene, the Sfrs1 gene for arginine/serine-rich splicing factor 1 (ASF/SF2), the Vezf1 gene for vascular endothelial zinc finger 1, a novel gene (2210416O15Rik), the gene for the likely ortholog of H. sapiens CUE domain containing 1 CUEDC1 (C330016O16Rik), the Mrps23 gene for mitochondrial ribosomal protein S23 and two CpG islands, complete sequence Length = 223276 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gcttggctttccagctagta 24 |||||||||||||||||||| Sbjct: 197334 gcttggctttccagctagta 197353
>tpg|BK005078.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription factor 75 (WRKY75) gene, complete cds Length = 4697 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tcgtcgtcgcgctcgccgcc 153 |||||||||||||||||||| Sbjct: 547 tcgtcgtcgcgctcgccgcc 566
>gb|AC104120.2| Homo sapiens chromosome 5 clone RP11-404L6, complete sequence Length = 123372 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcccgagctcgtcggcaact 235 |||||||||||||||||||| Sbjct: 119228 gcccgagctcgtcggcaact 119209
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 gctgccgcccgagctcgtcg 229 |||||||||||||||||||| Sbjct: 266876 gctgccgcccgagctcgtcg 266895
>gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, complete sequence Length = 132573 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gcccgagctcgtcggcaact 235 |||||||||||||||||||| Sbjct: 111727 gcccgagctcgtcggcaact 111746
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 gcgcgtccggcgtcggcgccgcga 130 ||||| |||||||||||||||||| Sbjct: 4316366 gcgcggccggcgtcggcgccgcga 4316389
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 cgacgcgctgccgcccgagctcgt 227 ||||||||||||| |||||||||| Sbjct: 2784700 cgacgcgctgccggccgagctcgt 2784723
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 gacgcgctgccgcccgagct 224 |||||||||||||||||||| Sbjct: 14790204 gacgcgctgccgcccgagct 14790223
>ref|NM_208701.1| Eremothecium gossypii ACL056Cp (ACL056C), mRNA Length = 678 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gctgccgcccgagctcgtcg 229 |||||||||||||||||||| Sbjct: 433 gctgccgcccgagctcgtcg 414
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 gcgcgcgcgtccggcgtcgg 122 |||||||||||||||||||| Sbjct: 295403 gcgcgcgcgtccggcgtcgg 295422
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 gacgcgctgccgcccgagct 224 |||||||||||||||||||| Sbjct: 14870641 gacgcgctgccgcccgagct 14870660 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,855,236 Number of Sequences: 3902068 Number of extensions: 1855236 Number of successful extensions: 42231 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 37904 Number of HSP's gapped (non-prelim): 4339 length of query: 341 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 319 effective length of database: 17,147,199,772 effective search space: 5469956727268 effective search space used: 5469956727268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
